mRNA_L-elsbetiae_contig11.895.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11.895.1
Unique NamemRNA_L-elsbetiae_contig11.895.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11.895.1 vs. uniprot
Match: A0A6H5JJY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.720e-17
Identity = 71/132 (53.79%), Postives = 80/132 (60.61%), Query Frame = 2 
Query:  500 KRKP-PQGAAGKTTLLPSVDDLFSSTAGPDFLTAPGAGEEFVVKATKKEXXXXXXXXXXXXXXXXXXXXXXXXX------KRERDIAAGTGXXXXXGAKKLKGGAAGPTGPPVDRAKG-GSKEKVSAKDKVK 871
            +R P P G +G  +LLPSV DLFSSTAGPDFL APGAG++F+VKA KKE                XXXXXXXXX      KRERD+AAG       G KK KGG        VD+ K  G KEK+SAKDKVK
Sbjct:  105 RRNPSPAGNSGGGSLLPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKEKKKQTAAEATTGDPTAXXXXXXXXXXXGATAKRERDVAAGV-RGTAVGVKKPKGGXXXXXXXXVDKRKAAGGKEKISAKDKVK 235
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJY2_9PHAE5.720e-1753.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11contigL-elsbetiae_contig11:28626..30379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7G8J9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E19I@1,2SCNU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size872
Cds size699
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11.895.1prot_L-elsbetiae_contig11.895.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11 28626..29324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.1315176-CDS-L-elsbetiae_contig11:28625..293241622815315.1315176-CDS-L-elsbetiae_contig11:28625..29324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 28626..29324 -
1691682833.3001668-CDS-L-elsbetiae_contig11:28625..293241691682833.3001668-CDS-L-elsbetiae_contig11:28625..29324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 28626..29324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.1443145-UTR-L-elsbetiae_contig11:29324..294491622815315.1443145-UTR-L-elsbetiae_contig11:29324..29449Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 29325..29449 -
1691682833.3313115-UTR-L-elsbetiae_contig11:29324..294491691682833.3313115-UTR-L-elsbetiae_contig11:29324..29449Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 29325..29449 -
1622815315.1558628-UTR-L-elsbetiae_contig11:30332..303791622815315.1558628-UTR-L-elsbetiae_contig11:30332..30379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 30333..30379 -
1691682833.344101-UTR-L-elsbetiae_contig11:30332..303791691682833.344101-UTR-L-elsbetiae_contig11:30332..30379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 30333..30379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11.895.1

>prot_L-elsbetiae_contig11.895.1 ID=prot_L-elsbetiae_contig11.895.1|Name=mRNA_L-elsbetiae_contig11.895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=233bp
MSLSGLVGGYGSDDSDSASSADNDDVGKRGVNEGSSGKEKKSTAPASGGA
ASAPAGGGGKGPQKTANTKDSSSSGSDSDSSSGSSEEDNSGLEDGTAGGG
RGGRKHGEGKRKPPQGAAGKTTLLPSVDDLFSSTAGPDFLTAPGAGEEFV
VKATKKEKKKQPAGPSSSSTGATGTGAAAAAAKRERDIAAGTGGAAAVGA
KKLKGGAAGPTGPPVDRAKGGSKEKVSAKDKVK
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mRNA from alignment at L-elsbetiae_contig11:28626..30379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11.895.1 ID=mRNA_L-elsbetiae_contig11.895.1|Name=mRNA_L-elsbetiae_contig11.895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1754bp|location=Sequence derived from alignment at L-elsbetiae_contig11:28626..30379- (Laminarionema elsbetiae ELsaHSoW15)
CTACCATCTACCAGGGAAGAGAGGAAAAGAGGGAGAGGGAGAGAGAGGTA
TGGACAATGATGATAGTGGAAGACGTTGCTGCGCACGCTCTCGTGTCTAG
AGCAGGAGACTGTTGTATGTATTTTATGTAGAGACATAGACTTAGATGTA
CATATCTAGCTTCTAGGCAGCCTGCGCAACTCGCACGGAGAAAGGAGAAA
GTATATCTACATCTAGGTACGCTCACCACTTCTGAGATTCCGGATGCAAC
TCAACCCACTTTCGAAAGACCTGTGTTTAGTTGCAAAGGTTATGAGTTGA
GTTATCACTCCTCCTTTGATGGCCACAACTGACATTGGGTGTTATGACGT
TAGATACCACCCCCAAACAAGCTGTGTTCTGTAGGCCAAGAGCTCTCTAT
GTATCTAGGCGTTGAATACCGGAAGCCCTCGTGGAGCGCACTAGTGCCGG
TTGATTTGTTTACTGCCGTGGCCTCCCCCTGTTGCTAGTGTACTAGATAA
CGTGTACGAGATGATTTCGTACAGCCCACAACAACAGCCTTTACCTGATG
AATGGTGTGTGTGCTGCATATCTACATACTACTGGTCGAGCCCATGAAGT
AGTGGGGGGGAAAACCTTGGATTGAATGTACGGGCCCCTGTCACAACATA
CAGTCTTGTGGATGCAGCGGTGTTACGATCCATGACATTCTGTATCAACG
ACACTCTGCCGGTCGGTGTAATGAAGGTCTAACGGTCCCCGTCGAACCAA
GAGCAGCGCTGTCACCATCGAACAGCAACAAAGTCTCGGATGTACCACAG
ACAGCCTATACATTATTTTATTCCCAGAAAAGACCATGCATGAGAAAAGC
TGTTGCAAGACAATAGCTGTTGGCCTCGTTGGATGACTTTTCCTCCCCCT
CTCACACCCTTCTCTGATGCTACGAACCAGCCGAAGGTATCCACGTTGCT
AGTACAACTAGAGAGCCTGAGAGAGAGGAGAGGAGGGTCTCTTGAAGAAC
TGCTGGCCTCTATTGTTTAGAAGGGGCGCTCTTTCCCCCGAGCCAGAGCT
GAAACATGTCTCTGTCGGGGCTAGTTGGAGGCTACGGCAGCGACGACTCA
GACAGCGCATCATCGGCGGACAATGACGACGTCGGAAAACGCGGCGTGAA
CGAGGGTAGCAGCGGGAAGGAGAAGAAGAGCACTGCACCTGCGTCGGGTG
GCGCAGCCAGCGCCCCCGCTGGCGGCGGTGGGAAGGGACCGCAGAAAACG
GCCAACACAAAAGACTCCAGCAGCAGCGGCAGTGACAGCGATAGTAGCAG
CGGCAGCAGCGAAGAAGACAATAGTGGTTTAGAGGATGGCACTGCAGGAG
GAGGAAGAGGGGGGCGAAAGCACGGCGAAGGCAAGCGAAAACCCCCACAA
GGTGCTGCTGGCAAGACCACCCTGCTCCCCTCCGTCGACGACCTATTCAG
CAGCACCGCGGGGCCCGACTTCCTCACCGCTCCGGGGGCCGGTGAGGAAT
TTGTGGTGAAGGCCACCAAGAAAGAGAAGAAGAAACAACCAGCCGGGCCG
TCCTCTTCCTCAACAGGTGCTACAGGCACCGGCGCCGCTGCCGCCGCAGC
GAAACGGGAGAGGGACATTGCAGCGGGGACGGGAGGTGCTGCCGCCGTCG
GGGCCAAGAAGCTCAAGGGGGGGGCGGCCGGACCCACGGGCCCACCAGTA
GACAGAGCGAAGGGCGGCAGCAAGGAAAAGGTCTCCGCGAAGGACAAGGT
CAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11:28626..30379-

>mRNA_L-elsbetiae_contig11.895.1 ID=mRNA_L-elsbetiae_contig11.895.1|Name=mRNA_L-elsbetiae_contig11.895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig11:28626..30379- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTGTCGGGGCTAGTTGGAGGCTACGGCAGCGACGACTCAGACAG
CGCATCATCGGCGGACAATGACGACGTCGGAAAACGCGGCGTGAACGAGG
GTAGCAGCGGGAAGGAGAAGAAGAGCACTGCACCTGCGTCGGGTGGCGCA
GCCAGCGCCCCCGCTGGCGGCGGTGGGAAGGGACCGCAGAAAACGGCCAA
CACAAAAGACTCCAGCAGCAGCGGCAGTGACAGCGATAGTAGCAGCGGCA
GCAGCGAAGAAGACAATAGTGGTTTAGAGGATGGCACTGCAGGAGGAGGA
AGAGGGGGGCGAAAGCACGGCGAAGGCAAGCGAAAACCCCCACAAGGTGC
TGCTGGCAAGACCACCCTGCTCCCCTCCGTCGACGACCTATTCAGCAGCA
CCGCGGGGCCCGACTTCCTCACCGCTCCGGGGGCCGGTGAGGAATTTGTG
GTGAAGGCCACCAAGAAAGAGAAGAAGAAACAACCAGCCGGGCCGTCCTC
TTCCTCAACAGGTGCTACAGGCACCGGCGCCGCTGCCGCCGCAGCGAAAC
GGGAGAGGGACATTGCAGCGGGGACGGGAGGTGCTGCCGCCGTCGGGGCC
AAGAAGCTCAAGGGGGGGGCGGCCGGACCCACGGGCCCACCAGTAGACAG
AGCGAAGGGCGGCAGCAAGGAAAAGGTCTCCGCGAAGGACAAGGTCAAAA
TGTCTCTGTCGGGGCTAGTTGGAGGCTACGGCAGCGACGACTCAGACAGC
GCATCATCGGCGGACAATGACGACGTCGGAAAACGCGGCGTGAACGAGGG
TAGCAGCGGGAAGGAGAAGAAGAGCACTGCACCTGCGTCGGGTGGCGCAG
CCAGCGCCCCCGCTGGCGGCGGTGGGAAGGGACCGCAGAAAACGGCCAAC
ACAAAAGACTCCAGCAGCAGCGGCAGTGACAGCGATAGTAGCAGCGGCAG
CAGCGAAGAAGACAATAGTGGTTTAGAGGATGGCACTGCAGGAGGAGGAA
GAGGGGGGCGAAAGCACGGCGAAGGCAAGCGAAAACCCCCACAAGGTGCT
GCTGGCAAGACCACCCTGCTCCCCTCCGTCGACGACCTATTCAGCAGCAC
CGCGGGGCCCGACTTCCTCACCGCTCCGGGGGCCGGTGAGGAATTTGTGG
TGAAGGCCACCAAGAAAGAGAAGAAGAAACAACCAGCCGGGCCGTCCTCT
TCCTCAACAGGTGCTACAGGCACCGGCGCCGCTGCCGCCGCAGCGAAACG
GGAGAGGGACATTGCAGCGGGGACGGGAGGTGCTGCCGCCGTCGGGGCCA
AGAAGCTCAAGGGGGGGGCGGCCGGACCCACGGGCCCACCAGTAGACAGA
GCGAAGGGCGGCAGCAAGGAAAAGGTCTCCGCGAAGGACAAGGTCAAA
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