mRNA_L-elsbetiae_contig1099.886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 2.050e-10 Identity = 63/165 (38.18%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCE-DETTFFTCGPYDCIDPSSACVDDDDSSVS---------WSDSECADETW----ACFFDA-ECFECLTSGTSSTEDDAVESCPISSGTCSD-YAGFYCCAIEADMDEGCEDNSELIDYIGCIHIAFEGDDCGFGSFCDYT 594 G+C+ NNNEQCGYDGGDCC C C D + F C + CIDP++ CVDDDD + D C +T+ C +D +C EC T G+ ST D ++ C D A + I DM E C D L D I + FE D FG C+ T Sbjct: 65 GFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCMMEYLGDGYC--DTYNNIEICDYDGGDCCEC-TCGSDST--DVLDXXXXXXXXCIDPTASCFDENITVDMYEYC-DVELLGDSICNLSNNFEVCDYDFGDCCEAT 223
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 7.620e-10 Identity = 63/163 (38.65%), Postives = 78/163 (47.85%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCE-DETTFFTCGPYDCIDPSSACVDDDDSSVS---------WSDSECA--DETWACFFDA-ECFECLTSGTSSTEDDAVESCPISSGTCSD-YAGFYCCAIEADMDEGCEDNSELIDYIGCIHIAFEGDDCGFGSFCDYT 594 G+C+ NNNEQCGYDGGDCC C C D + F C + CIDP++ CVDDDD + D C + C +D +C EC T G+ ST D + S C D A + +I DM E C D L D I FE D FG C+ T Sbjct: 214 GFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCMIEYLGDGYCDTYNNNEICDYDGGDCCEC-TCGSDST--DVLVGSDCSDFVCIDPTASCFDESITVDMYEYC-DVELLGDSICQPSNNFEVCDYDFGDCCEAT 372
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.170e-9 Identity = 60/185 (32.43%), Postives = 86/185 (46.49%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCEDETTFFTCG--PYDCIDPSSACVDDDDSSV---------SWSDSECA--DETWACFFDAECFECLTSGTSSTEDDAVESCPISSGTCSDYAGFYCCAIEADMDEGCEDNSEL-IDYIGCIHIAFEGDDCGFG--SFCDYTGDDDSNDISITWEDDDLAQC 654 G CD NNNE+CGYDGGDCC C C D+ F+ CG + CIDPS+ C DDDD +V S D +C + C +D +C + +DD+ + CS+ F C D D C ++ ++ +D + D CG +F D DDD+N+ ++ D C Sbjct: 187 GDCDQINNNEECGYDGGDCCFCTCLDD--FYECGIRGFACIDPSAECADDDDVTVDTVENCGVRSIGDGQCDLDNNREECHYDGG--DCCSCTCQVPDDDSGDD----GSLCSESTVFAC----IDPDAPCVNDDDITVDMM---------DTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSC 350
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 1.890e-9 Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCEDETTF-------FTCGPYDCIDPSSACVDDDDSSV 306 G+CD NNNE CGYDGGDCC C CE E+ + + C + CIDP++ACV DDD +V Sbjct: 102 GWCDEGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITV 161
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: D8LEX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX5_ECTSI) HSP 1 Score: 70.5 bits (171), Expect = 2.150e-9 Identity = 43/102 (42.16%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCEDETTFFT---CGPYDCIDPSSACVDDDDSSVSWSDSECADETWACFFDAECFECLTSGTSSTEDDAVESCPISSGTC 444 G+CD NNNEQCGYDGGDCC C C T + T C + CIDP + C DDDD + AD +C D L G T ++ +E+C SG C Sbjct: 11 GFCDDYNNNEQCGYDGGDCCECTCVVSTLWSTESSCTEFACIDPRAPCADDDDIT--------ADAVESCIIDY-----LGDGICDTSNN-IETCGYDSGDC 98
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 2.270e-9 Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCEDETTF-FTCGPYDCIDPSSACVDDDDSSV 306 G+CD NNNE CGYDGGDCC C CE+E + C + CIDPS+ CV+DDD ++ Sbjct: 428 GWCDQGNNNEACGYDGGDCCECTCENERDEDYRCMEFSCIDPSAPCVNDDDVTI 481
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 2.460e-9 Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCEDETTF-------FTCGPYDCIDPSSACVDDDDSSV 306 G+CD NNNE CGYDGGDCC C CE E+ + + C + CIDP++ACV DDD +V Sbjct: 464 GWCDKGNNNEACGYDGGDCCECTCEYESPYDWDDDWDYHCREFSCIDPNAACVSDDDITV 523
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 3.880e-9 Identity = 62/210 (29.52%), Postives = 87/210 (41.43%), Query Frame = 1 Query: 148 GYCDFTNNNEQCGYDGGDCCICDCE-------DETTFFTCGP-YDCIDPSSACVDDDDSSVSWSDS-----------ECADETWACFFDA-ECFECLTSGTSSTEDDAVESCPISSGTCSDYAGFYCCAIEADMDEGC-------------EDNSELIDYIGCIHIAFEGDDCGFGSFCDYTGDDDSNDISITWEDDDLAQCEDEILGCF 678 G+CD NNNE CGYDGGDCC C CE D + CG + CIDPS+ CV+DDD +V +S + + AC +D +C EC + + +C C D ++ DM + C E+N+EL A++G DC C+ T + ND + C+D CF Sbjct: 112 GWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVNDDDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNNKCGGRSGFACIDPGAPCVDDD-----SVTVDMIDNCDYLRVMGNGWCDEENNNEL--------CAYDGGDC-----CECTCESAWNDDYTCSSEHGTFNCKDPNASCF 303
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: D7FTV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV4_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 2.400e-8 Identity = 59/202 (29.21%), Postives = 78/202 (38.61%), Query Frame = 1 Query: 325 CADETWACFFDAECFECLTSGTSSTEDDAVESCPISSGTCSDYAGFYCCAIEADMDEGCEDNSELIDYIGCIHI-----AFEGDDCGFGSFCDYTGDDDSNDISITWEDDDLAQCEDEILGCFYDQDCFECMMSGSXXXXXXXXXXXXXXXXXXDVLESCPISS--DTCSGYADFYCCAIETDMNEGCEDNSELLDYLNCLH 909 C +E AC A C C + ++ D A S+ TC D A CCA E GCEDN E D +GCI+ + DC G +G +D + C EI C D +C C S D +E C S+ TC + CCA++ GCEDN L D L C++ Sbjct: 59 CPNEDDACVASASCLACNEAYMAAFSDCAASL--TSTSTCDDLAEAMCCAAE-----GCEDNEEFADIMGCINGDLGCGVIDIGDCAGGGSTAISG----SDTTXXXXXXXXTDCPTEISACNADDECVTCTQS------------------YVDAVEGCFASATGSTCDDVEESVCCAVD-----GCEDNEALNDLLACIN 226
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Match: D7FTV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV5_ECTSI) HSP 1 Score: 67.0 bits (162), Expect = 3.010e-8 Identity = 60/201 (29.85%), Postives = 79/201 (39.30%), Query Frame = 1 Query: 325 CADETWACFFDAECFECLTSGTSSTEDDAVESCPISSGTCSDYAGFYCCAIEADMDEGCEDNSELIDYIGCIHIAFEGDDCGFGSFCD----YTGDDDSNDISITWEDDDLAQCEDEILGCFYDQDCFECMMSGSXXXXXXXXXXXXXXXXXXDVLESCPISS--DTCSGYADFYCCAIETDMNEGCEDNSELLDYLNCLH 909 C E AC C C + ++ A S+ TC D CCA+E GCEDN E D +GCI+ CG+ D +G D + D + T E D C EI C D +C C S D +E C S+ TC + CCA++ GCEDN L D L C++ Sbjct: 50 CPAEDAACLASTSCLACNEAYIAAFSGCAASL--TSTSTCDDLVDAMCCAVE-----GCEDNEEFADIMGCINADIG---CGYIDLGDCSTAISGSDTTTDSTSTTETD----CPTEISACNADDECVTCTQS------------------YVDAVEGCFASATGSTCDDVEESVCCAVD-----GCEDNEALNDLLVCIN 213 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1099.886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1099.886.1 >prot_L-elsbetiae_contig1099.886.1 ID=prot_L-elsbetiae_contig1099.886.1|Name=mRNA_L-elsbetiae_contig1099.886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=356bp MSTVLTAQTPTILASAASILPRAQTRPVAWTTTTSMTPMAATRPGQVIGYback to top mRNA from alignment at L-elsbetiae_contig1099:5701..10778- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1099.886.1 ID=mRNA_L-elsbetiae_contig1099.886.1|Name=mRNA_L-elsbetiae_contig1099.886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5078bp|location=Sequence derived from alignment at L-elsbetiae_contig1099:5701..10778- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1099:5701..10778- >mRNA_L-elsbetiae_contig1099.886.1 ID=mRNA_L-elsbetiae_contig1099.886.1|Name=mRNA_L-elsbetiae_contig1099.886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2136bp|location=Sequence derived from alignment at L-elsbetiae_contig1099:5701..10778- (Laminarionema elsbetiae ELsaHSoW15)back to top |