mRNA_L-elsbetiae_contig1098.880.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1098.880.1 vs. uniprot
Match: A0A6H5KM21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM21_9PHAE) HSP 1 Score: 677 bits (1746), Expect = 1.960e-236 Identity = 374/599 (62.44%), Postives = 441/599 (73.62%), Query Frame = 1
Query: 1 QDTSPAAYVHVSLHSLAIGSEAARSQDELMDAIAAPEPNIVTVRNILYTVREELRQPVLLSPSASTRHKLRTPLMAAAATSEMPIAGAILAALGDIFYYHGNEKKRVKARTVEMQRQLEMVDVDGKTLLMHASSGTSSAVFQALSRTVQPSQFREVIKAKDSRGMTLLHHAVNGNGD-------------------ERALAASTGA-------PPATGGERLPPVTEGGAAAETPIATEPPHMFSLDQRLPVIQSVLEFARTKLWMPEYRKLLQARDGWHRSVIEHAIMSGRTQIFEAVFDALRKDIHDEKLDLMLDPGIESSHAQTSLSRALDSQVGSKLPELVREKATGLKSDVSKRKDDSTVASKIQSFIPGNLIVIFQLLLPEFSEEGDGPLYLLLALCFVAPFWSWGAAMSTKRDPDTKNTRARQTSAKHFLVVPAMFFWGIGTSKIGSNSFSWAETASAAALAVATIIIPAIDTFCTGRGLRATVSVITIYLLDLCDSKKGKTTRAQERSNQLFGQDD-IASTRNSVSTRPRDTAFAGDNPRPTVDNHTVEAERRGSTTGGARQNVAGAEDPGSPRSQTSRSHVESIWGEEDD 1716
+DTSPAA+V SLHSLA GSE ARSQDELMDAIA P++V VRNIL T+RE+LR+PVLL PSASTRHKLRTPLMAAAAT +MPI G +LAA GD+F ++ V AR MQ+QL+MVDV+G TLLMHA S +SSAVFQALS+TVQPSQFREVI+A D ER +A G PP T GE L VTEGG AE + E P F LD RLPVIQ+VLEFAR LWMPEYRKLL+ARDGWHRS+IEHAIMSGRTQIFE +F+A R+DIHDEK+DL+LDPG+E+SHAQTSL RA +SQ G+ + +LV+EK T LKSDVSKRKDDSTVA+KIQ+FIPGNLIVIFQLLLPEF E GDGPLYLLL LCF+APFWSWG AMS KRDP+ NTRARQT+AK+FL +PAMFFWG+GTSKI NSF+WAE+ASAAALAVATI+IPA+DT+ +GRG RATVSV+TI+ L+L KGK TRA +RSNQL+GQDD IAS RN S P +F +PR T HT++A++ + + P S RS++S+S V SIWG++ D
Sbjct: 6 EDTSPAAHVRASLHSLAAGSEIARSQDELMDAIAVVPPDLVAVRNILSTMREDLRRPVLLYPSASTRHKLRTPLMAAAATGQMPIVGVVLAAFGDVFMEGEVKENMVNARMKGMQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFREVIRATDXXXXXXXXXXXXXXXXXXXXXXXXXXDPLQTAPPKERLPSAGAGRGGSTQTEPPPTAGESLATVTEGGGPAEGLASEEVP--FVLDPRLPVIQAVLEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFETIFNAFRRDIHDEKIDLLLDPGVETSHAQTSLRRATNSQEGTPMAQLVQEKTTSLKSDVSKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGVAMSVKRDPEITNTRARQTAAKYFLAIPAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMSRTKGKITRATDRSNQLYGQDDDIASQRNFHSKPPPYRSFVNTDPR-TTGTHTMDADQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGD 601
BLAST of mRNA_L-elsbetiae_contig1098.880.1 vs. uniprot
Match: D7FWX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWX2_ECTSI) HSP 1 Score: 562 bits (1449), Expect = 2.070e-193 Identity = 306/486 (62.96%), Postives = 363/486 (74.69%), Query Frame = 1
Query: 340 MQRQLEMVDVDGKTLLMHASSGTSSAVFQALSRTVQPSQFREVIKAKDSRGMTLLHHAVNGNGDERALAAST-----------------GA---------PPATGGERLPPVTEGGAAAETPIATEPPHMFSLDQRLPVIQSVLEFARTKLWMPEYRKLLQARDGWHRSVIEHAIMSGRTQIFEAVFDALRKDIHDEKLDLMLDPGIESSHAQTSLSRALDSQVGSKLPELVREKATGLKSDVSKRKDDSTVASKIQSFIPGNLIVIFQLLLPEFSEEGDGPLYLLLALCFVAPFWSWGAAMSTKRDPDTKNTRARQTSAKHFLVVPAMFFWGIGTSKIGSNSFSWAETASAAALAVATIIIPAIDTFCTGRGLRATVSVITIYLLDLCDSKKGKTTRAQERSNQLFGQDD-IASTRNSVSTRPRDTAFAGDNPRPTVDNHTVEAERRGSTTGGARQNVAGAEDPGSPRSQTSRSHVESIWGEEDD 1716
MQ+QL+MVDV+G TLLMHA S +SSAVFQALS+TVQPSQFR+VI+A D+ GMT+LHHAVNGNG+E+A S+ GA PP+T GERL VTEGG E + + P F LD RLPVIQ+ LEFAR LWMPEYRKLL+ARDGWHRS+IEHAIMSGRTQIFEAVF+A R+D+HDEK+DL+LDPG+E+SHAQTSL RA++SQ G+ + +LVREK T LKSDV+KRKDDSTVA+KIQ+FIPGNLIVIFQLLLPEF E GDGPLYLLL LCF+APFWSWGAAMS KRDP+T NTRA PAMFFWG+GTSKI NSF+WAE+ASAAALAVATI+IPA+DT+ +GRG RATVSV+TI+ L+L KKGKTTRA RSNQL+GQDD I S RN S P +F NPR T HT++A + + + P S RS++S+S V SIWG++ D
Sbjct: 1 MQKQLDMVDVEGMTLLMHACSTSSSAVFQALSKTVQPSQFRDVIRATDAHGMTILHHAVNGNGNEQATTRSSXXXXXXTAPPQERLPSAGAGREGSTPTEPPSTAGERLATVTEGGGPVEGQESEDVP--FVLDPRLPVIQAALEFARANLWMPEYRKLLEARDGWHRSIIEHAIMSGRTQIFEAVFNAFRRDVHDEKIDLLLDPGVETSHAQTSLRRAMNSQEGTPMAQLVREKTTSLKSDVTKRKDDSTVAAKIQAFIPGNLIVIFQLLLPEFDESGDGPLYLLLVLCFIAPFWSWGAAMSVKRDPETTNTRAS----------PAMFFWGVGTSKIAPNSFNWAESASAAALAVATIVIPALDTYFSGRGARATVSVVTIFFLNLMGGKKGKTTRAANRSNQLYGQDDDIVSQRNFPSKPPPYRSFVNTNPR-TAGTHTMDANQTPAIRPAPLRTADAGGSPRSQRSKSSKSPVGSIWGDDGD 473
BLAST of mRNA_L-elsbetiae_contig1098.880.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI) HSP 1 Score: 174 bits (442), Expect = 2.190e-43 Identity = 145/486 (29.84%), Postives = 221/486 (45.47%), Query Frame = 1
Query: 172 VLLSPSASTRHKLRTPLMAAAATSEMPIAGAILAALGDIFYYHGNEKKRVKARTVEMQRQ--------------------------------LEMVDVDGKTLLMHASSGTSSAVFQALSRTVQPS-----QFREVIKAKDSRGMTLLHHAVN-------------------------GNGDERALAASTGAPPA-TGGERLPPVTEGGAAA-----------ETPIATEPPHMFSLDQR----LPVIQSVLEFARTKLWMPEYRKLLQARDGWHRSVIEHAIMSGRTQIFEAVFDALRKDIHDEKLDLMLDPGIESSHAQTSLSRALDSQVGSKLPELVREKATGLKSDVSKRKDDSTVASKIQSFIPGNLIVIFQLLLPEFSEEGDGPLYLLLALCFVAPFWSWGAAMSTKRDPDTKNT--RARQTSAKHFLVVPAMFFWGIGTSKIGSNSFSWAETASAAALAVATIIIPAIDTFCTGRGLRA 1389
VL +PS +HK+RTPLMAAAAT ++ A L AL + + ++ + R+ LE+ D TLLMHA+S + +FQ + ++ + RE++ +DS G+ LL HA + G E + + T + A TGG P GA A E + + +++R +PV + + LW E + L+A D W RSV+ HA++SG +FEA + A+R + DE + M++ E T + AL ++ + + +L +A LK DV R ST+ +KI+ FIPG L+V+FQLLLP+ +E L LL +C +AP S D D+K+T +AR L PAMFFWG+GTS +G + W+ + SA ++A AT+ IPA+D+F R A
Sbjct: 91 VLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAMRKAFGGDEDLREMMVERDSDGLNLLMHAASCCAPASALVPAETPPVDPDSSHKKDGGPAESSRSKGTASKTALTGGGTSPADASSGAVAGDAAKDKKTAVEKTVEADTKEEKGVNKRDAVVVPVFKVAVRLVTRCLWTDEVLQQLKAVDLWGRSVLTHALLSGHEMMFEAAYGAVRDVLQDELVSEMMETN-EGEREDTPMIDAL-ARGNTDMRKLYALRAGQLKKDVDARSKLSTMDAKIEGFIPGKLVVMFQLLLPQIAEGRQ--LILLYIMCALAPLVKLATTGSVD-DSDSKHTGVKARSNKLSVLLGAPAMFFWGVGTSTVGQTALGWSSSLSATSMAAATLAIPAVDSFFNSRKASA 571
BLAST of mRNA_L-elsbetiae_contig1098.880.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE) HSP 1 Score: 164 bits (414), Expect = 4.630e-39 Identity = 150/517 (29.01%), Postives = 217/517 (41.97%), Query Frame = 1
Query: 175 LLSPSASTRHKLRTPLMAAAATSEMPIAGAILAALGDIFYYHGNEKKRVKARTVEMQRQLEMVDVDGKTLLMHASSGTS-------------------------------------SAVF----------------------------------------------QALSRTVQPSQFREVIKAKDSRGMTLLHHAVNGNGDERALAASTGAPPAT---------------------GGERLPPVTEGGAAAETPIATE-----------PPHMFSLDQRLPVIQSVLEFARTKLWMPEYRKLLQARDGWHRSVIEHAIMSGRTQIFEAVFDALRKDIHDEKLDLMLDPGIESSHAQTSLSRALDSQVGSKLPELVREKATGLKSDVSKRKDDSTVASKIQSFIPGNLIVIFQLLLPEFSEEGDGPLYLLLALCFVAPFWSWGAAMSTKRDPDTKNTRARQTSAKHFLVVPAMFFWGIGTSKIG-SNSFSWAETASAAALAVATIIIPAIDTFCTGR 1377
+L+PS S H++RTPLMAAAAT + + +L A+ E R+ R ++QLE +D G TLLM A+ + SAVF A R + PS+ R+++K DS G+T L HA++ A + TGAP AT GE P + LD + V++S L E R+ L+A D W R++ HA+++ R ++F+AVF A R+ I D+++ ++ GI ++ V + V + LK ++ + ST+ SKIQSFIPG LIVIFQLLLPE L LL+ + +AP SW A + + P + T R++ FL PAMFFWG+GTS +G ++ W ++A+AAALAVATIIIPA+D F R
Sbjct: 99 VLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRMETNRISLR----KKQLEYMDESGMTLLMLAARSGNVGILEAVVERVRIAPEXXXXXXXXXXXXXXXXXXXXXSAVFTVILNELQRCYKDNVEEQLLASSADDRTILMHAARCGDQMGVLSVSHACQRFIMPSRLRKLVKQVDSEGVTFLMHAIS------ATSFHTGAPTATXXXXXXXXXXXXXXXXXXXXXAGEXXXXXXXXXXXXXXXXXXXXXXXXXXGEGAPRDEWVLDPGMAVLKSALALVE------EVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREHILDDEIAALM--GINKEDKSDTVMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIVIFQLLLPEVGSSDK--LTLLIIMSAIAPGLSWAAGLVAREKPGS--TEKRRSLVSLFLSAPAMFFWGLGTSTVGMTHGMGWNDSATAAALAVATIIIPAMDAFFNSR 593
BLAST of mRNA_L-elsbetiae_contig1098.880.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 2.610e-12 Identity = 98/409 (23.96%), Postives = 147/409 (35.94%), Query Frame = 1
Query: 175 LLSPSASTRHKLRTPLMAAAATSEMPIAGAILAALGDIFYYHGNEKKRVKARTVEMQRQLEMVDVDGKTLLM---------------------------------------HASSGTSSAVF----------------------------------------------QALSRTVQPSQFREVIKAKDSRGMTLLHHAVNGNGDERALAASTGAPPATGGERLPPVTEGGAAAETPIATE-----------------------------PPHMFSLDQRLPVIQSVLEFARTKLWMPEYRKLLQARDGWHRSVIEHAIMSGRTQIFEAVFDALRKDIHDEKLDLMLDPGIESSHAQTSLSRALDSQVGSKLPELVREKATGLKSDVSKRKDDSTVASKIQSFIPGNLIV 1059
+L+PS S H++RTPLMAAAAT + + +L A+ E R+ R ++QLE VD G TLLM HA+ SAVF A R + PS+ R++IK D G+T L HA++ A A TGAP P + + LD + V++S + E R+ L+A D W R++ HA+++ R ++F+AVF A R+ I D+++ ++ GI ++ V + V + LK ++ + ST+ SKIQSFIPG LIV
Sbjct: 56 VLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRMETNRISLR----RKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHAAGARRSAVFTVILDELQRCYKDNVEEQLLASSADDRTILMHAARCGDQMGALSVSHACQRFIMPSRLRKLIKQVDGEGVTFLMHAIS------ATADHTGAPTTXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXAGEGAPRNEWVLDPGMAVLKSAWALVK------EVREQLKATDSWGRTIFGHAVLTRRPKVFDAVFFAAREYILDDEIAALM--GINKEDKSDTIMETALQTVPRAMAARVARRDQELKRAITLEERASTIESKIQSFIPGKLIV 446 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1098.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1098.880.1 >prot_L-elsbetiae_contig1098.880.1 ID=prot_L-elsbetiae_contig1098.880.1|Name=mRNA_L-elsbetiae_contig1098.880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=549bp MDAIAAPEPNIVTVRNILYTVREELRQPVLLSPSASTRHKLRTPLMAAAAback to top mRNA from alignment at L-elsbetiae_contig1098:2043..15165- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1098.880.1 ID=mRNA_L-elsbetiae_contig1098.880.1|Name=mRNA_L-elsbetiae_contig1098.880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=13123bp|location=Sequence derived from alignment at L-elsbetiae_contig1098:2043..15165- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1098:2043..15165- >mRNA_L-elsbetiae_contig1098.880.1 ID=mRNA_L-elsbetiae_contig1098.880.1|Name=mRNA_L-elsbetiae_contig1098.880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3294bp|location=Sequence derived from alignment at L-elsbetiae_contig1098:2043..15165- (Laminarionema elsbetiae ELsaHSoW15)back to top |