mRNA_L-elsbetiae_contig10978.878.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10978.878.1
Unique NamemRNA_L-elsbetiae_contig10978.878.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10978.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10978contigL-elsbetiae_contig10978:5532..6196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size665
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10978.878.1prot_L-elsbetiae_contig10978.878.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10978 5614..6015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.7956793-UTR-L-elsbetiae_contig10978:5531..56131622815313.7956793-UTR-L-elsbetiae_contig10978:5531..5613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10978 5532..5613 +
1691682832.4170578-UTR-L-elsbetiae_contig10978:5531..56131691682832.4170578-UTR-L-elsbetiae_contig10978:5531..5613Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10978 5532..5613 +
1622815313.8186285-UTR-L-elsbetiae_contig10978:6015..61961622815313.8186285-UTR-L-elsbetiae_contig10978:6015..6196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10978 6016..6196 +
1691682832.452109-UTR-L-elsbetiae_contig10978:6015..61961691682832.452109-UTR-L-elsbetiae_contig10978:6015..6196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10978 6016..6196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.8079581-CDS-L-elsbetiae_contig10978:5613..60151622815313.8079581-CDS-L-elsbetiae_contig10978:5613..6015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10978 5614..6015 +
1691682832.4298124-CDS-L-elsbetiae_contig10978:5613..60151691682832.4298124-CDS-L-elsbetiae_contig10978:5613..6015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10978 5614..6015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10978.878.1

>prot_L-elsbetiae_contig10978.878.1 ID=prot_L-elsbetiae_contig10978.878.1|Name=mRNA_L-elsbetiae_contig10978.878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MAWFNRSIRMVHGPFSSRSLYREVRAHTRGGPNMHGQIPSSEARYWCISW
NPFGFAAVTSPQHRSWAATTVRSRNLQLQSQRLNEPTRNTESREKENLTI
QDNTSALKVLNTGEKNLATQDKASAVKPNMKKP*
back to top

mRNA from alignment at L-elsbetiae_contig10978:5532..6196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10978.878.1 ID=mRNA_L-elsbetiae_contig10978.878.1|Name=mRNA_L-elsbetiae_contig10978.878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=665bp|location=Sequence derived from alignment at L-elsbetiae_contig10978:5532..6196+ (Laminarionema elsbetiae ELsaHSoW15)
GCATGTCTCTCCGCGATCCATTGTACTCAAACTCTACTTCGTTAGCAGTT
AGCTCAGTCACGTGGATTCGCAGTGCTCGCATATGGCATGGTTCAATCGC
TCCATTCGAATGGTTCATGGTCCGTTCTCCTCACGGAGTCTTTACAGAGA
AGTTCGTGCACACACACGTGGCGGCCCGAACATGCACGGGCAAATACCGT
CATCAGAGGCGAGATATTGGTGCATATCTTGGAACCCCTTCGGATTTGCC
GCCGTAACATCCCCCCAGCATCGATCGTGGGCTGCAACTACAGTAAGATC
GCGAAATCTGCAGCTACAATCCCAAAGGTTAAATGAGCCGACTAGGAACA
CCGAATCACGTGAGAAGGAAAACCTGACCATCCAGGACAACACCTCAGCC
CTGAAAGTACTCAATACAGGAGAGAAAAACCTGGCCACCCAGGACAAAGC
CTCTGCCGTAAAACCAAACATGAAAAAACCATAGCTCCCAGAGGGGCAAA
CACTACGGCCGCACTTCAACGAGGTCGAGGCAGGACAAATCGTACCACAC
GGGAGTCAAACACCTTCGCCTAGTGCTTACGGTGACCCGCATGACGGATC
CTCCCTGCGTGACTACGCAAGACCCGTGAGTGCTACACAACTTCAGCAAC
CATCGACGGAGCGTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10978:5532..6196+

>mRNA_L-elsbetiae_contig10978.878.1 ID=mRNA_L-elsbetiae_contig10978.878.1|Name=mRNA_L-elsbetiae_contig10978.878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig10978:5532..6196+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATGGTTCAATCGCTCCATTCGAATGGTTCATGGTCCGTTCTCCTC
ACGGAGTCTTTACAGAGAAGTTCGTGCACACACACGTGGCGGCCCGAACA
TGCACGGGCAAATACCGTCATCAGAGGCGAGATATTGGTGCATATCTTGG
AACCCCTTCGGATTTGCCGCCGTAACATCCCCCCAGCATCGATCGTGGGC
TGCAACTACAGTAAGATCGCGAAATCTGCAGCTACAATCCCAAAGGTTAA
ATGAGCCGACTAGGAACACCGAATCACGTGAGAAGGAAAACCTGACCATC
CAGGACAACACCTCAGCCCTGAAAGTACTCAATACAGGAGAGAAAAACCT
GGCCACCCAGGACAAAGCCTCTGCCGTAAAACCAAACATGAAAAAACCAT
AGATGGCATGGTTCAATCGCTCCATTCGAATGGTTCATGGTCCGTTCTCC
TCACGGAGTCTTTACAGAGAAGTTCGTGCACACACACGTGGCGGCCCGAA
CATGCACGGGCAAATACCGTCATCAGAGGCGAGATATTGGTGCATATCTT
GGAACCCCTTCGGATTTGCCGCCGTAACATCCCCCCAGCATCGATCGTGG
GCTGCAACTACAGTAAGATCGCGAAATCTGCAGCTACAATCCCAAAGGTT
AAATGAGCCGACTAGGAACACCGAATCACGTGAGAAGGAAAACCTGACCA
TCCAGGACAACACCTCAGCCCTGAAAGTACTCAATACAGGAGAGAAAAAC
CTGGCCACCCAGGACAAAGCCTCTGCCGTAAAACCAAACATGAAAAAACC
ATAG
back to top