mRNA_L-elsbetiae_contig10977.876.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10977.876.1
Unique NamemRNA_L-elsbetiae_contig10977.876.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10977.876.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.360e-11
Identity = 42/98 (42.86%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:  337 CCICDCMEPVCGIEVAVCTTPVWSCVESPNQTGQGIIYSSVYPWATPCPILTPDDINDCGFYSGATCDCTCVEGEG--SVCGSGTGFDCSNPASECGE 624
            CC CDC   VC  E   C TP W CV     +  GI   S    +  CP L+ DD ++C  Y+   C CTC E +   ++CGSGTGFDC + AS+C E
Sbjct:  651 CCECDCSNQVCD-EDNTCVTPAWDCVVDQTSSPLGIYTGSGA--SAFCPDLSADDFDNCD-YNTQRCLCTCRESDPFTALCGSGTGFDCLDSASDCVE 744
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BLAST of mRNA_L-elsbetiae_contig10977.876.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.860e-10
Identity = 42/98 (42.86%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:  337 CCICDCMEPVCGIEVAVCTTPVWSCV--ESPNQTGQGIIYSSVYPWATPCPILTPDDINDCGFYSGATCDCTCVEGEGS--VCGSGTGFDCSNPASEC 618
            CC CDC   VC  E   C TP W CV  E+    G   + S        CP L+ DD ++C  Y+   C CTC E + +  +CGSGTGFDC +PAS+C
Sbjct:  471 CCECDCSNQVCD-EDNTCVTPAWDCVVDEALPDNGAYTVPSG------DCPSLSFDDFDNCD-YTTQPCLCTCRESDPATALCGSGTGFDCLDPASDC 560
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10977.876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF50_9PHAE9.360e-1142.86LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE3.860e-1042.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10977contigL-elsbetiae_contig10977:2778..5432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size933
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10977.876.1prot_L-elsbetiae_contig10977.876.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10977 3084..4787 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.7124786-UTR-L-elsbetiae_contig10977:2777..30831622815313.7124786-UTR-L-elsbetiae_contig10977:2777..3083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10977 2778..3083 -
1691682832.3402672-UTR-L-elsbetiae_contig10977:2777..30831691682832.3402672-UTR-L-elsbetiae_contig10977:2777..3083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10977 2778..3083 -
1622815313.7490966-UTR-L-elsbetiae_contig10977:4787..50941622815313.7490966-UTR-L-elsbetiae_contig10977:4787..5094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10977 4788..5094 -
1691682832.3909574-UTR-L-elsbetiae_contig10977:4787..50941691682832.3909574-UTR-L-elsbetiae_contig10977:4787..5094Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10977 4788..5094 -
1622815313.7582011-UTR-L-elsbetiae_contig10977:5385..54321622815313.7582011-UTR-L-elsbetiae_contig10977:5385..5432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10977 5386..5432 -
1691682832.4000254-UTR-L-elsbetiae_contig10977:5385..54321691682832.4000254-UTR-L-elsbetiae_contig10977:5385..5432Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10977 5386..5432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.722222-CDS-L-elsbetiae_contig10977:3083..32141622815313.722222-CDS-L-elsbetiae_contig10977:3083..3214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10977 3084..3214 -
1691682832.35308-CDS-L-elsbetiae_contig10977:3083..32141691682832.35308-CDS-L-elsbetiae_contig10977:3083..3214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10977 3084..3214 -
1622815313.7311046-CDS-L-elsbetiae_contig10977:3910..39911622815313.7311046-CDS-L-elsbetiae_contig10977:3910..3991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10977 3911..3991 -
1691682832.3645751-CDS-L-elsbetiae_contig10977:3910..39911691682832.3645751-CDS-L-elsbetiae_contig10977:3910..3991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10977 3911..3991 -
1622815313.740144-CDS-L-elsbetiae_contig10977:4726..47871622815313.740144-CDS-L-elsbetiae_contig10977:4726..4787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10977 4727..4787 -
1691682832.3810892-CDS-L-elsbetiae_contig10977:4726..47871691682832.3810892-CDS-L-elsbetiae_contig10977:4726..4787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10977 4727..4787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10977.876.1

>prot_L-elsbetiae_contig10977.876.1 ID=prot_L-elsbetiae_contig10977.876.1|Name=mRNA_L-elsbetiae_contig10977.876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MEPVCGIEVAVCTTPVWSCVESPNQTGQGIIYSSVYPWATPCPILTPDDI
NDCGFYSGATCDCTCVEGEGSVCGSGTGFDCSNPASECGE*
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mRNA from alignment at L-elsbetiae_contig10977:2778..5432-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10977.876.1 ID=mRNA_L-elsbetiae_contig10977.876.1|Name=mRNA_L-elsbetiae_contig10977.876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2655bp|location=Sequence derived from alignment at L-elsbetiae_contig10977:2778..5432- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGGTGGTTCCGTCGAAACCATTGGTGACAGTGTGTGCGATCCTGGTA
AGCCCCGGGTTGGTTATTTCTACTTCACGAGTAGGAGCCACACGCCCAGG
ACCGCAAGAAGATCGCGGTCGCTTCTCCGCACGTCTCTTTCGTGCTCACC
CGGCACATGCACGAGAGTGATGCTGTGCATTATCTGTCGGCTGATACTAT
GCAGGTAGATGTGTGGGATCGAGCGAAGACATTGCTTAAAAGCGCACAGA
AGGGCGCGACGTTTAGAGTCGTGTTTTTTTTCTTCCAATCCGGCGCTTCC
CCGTCCTTTTTCGATGCCGTTCTCTTTCTGCCCTGCAGGAAACAATGTTC
CGGAGTGCGACTATGACAGGGGCGAGTGAGTTAACGACTTCTCTTCCAGA
GGAGTGCTTCCGCACTCGCAGCGTTCCAACAAGCAATCACTCATATCAAC
GTTGGTTGAGCATTGGGGGTATCGCGAGGTTTAGAGGCCGGCATAAGTCA
TGTGCTATTTTGCTGTAGCCAGCTAGCTGACTTCATTGCGAACTACTGGT
CCTTCGCGGCGGTTTCTGAACACCCCCCCCCCCCCTGGCGCGCGCGTCGT
TGTATCCCTCCTGCTATCTAAAAAAGCTGTTGCATTTGTGACTGCATGGA
ACCGGTATGCGGTATTGAGGTCGCCGTCTGTACCACGCCGGTGTGGTCCT
GTGTAGGTGAGAGATGATGACCGGCCTGCCGCATTGTGCAGCGATTTTAC
GCGAGTGAGACGAGCCCCAAGCCGCGAGCACCTCTAGATAGCCATGTGTC
TTCGTCGTTCGCGCGTGGAAAGGGCGCAAGTTGCCTCTTTTTTCATATTA
GAGGTAGGTGTGCCTTGAGCATGCATGTGCAATGGCTACGGCATATTTCT
GGGGGAAAGTAACAACCAAAATACATAGGTAAGTAGTTTCAGACATACAT
ACAAATCTGCACGAGTAAGCTGCGACTATCATGCTGAAAACACTCAACGC
GCGGGAAAAGTAAGTGATACCTGGCACGGCTTCTTGTTCCAGAGAAGGTT
TCGGGCAGGTTGGATTTGAAAAAAACAAAACGATGGAGTTTTGTTGCTTT
GCCATCCTTTGCTTTGCAGAGGCGCAAGGCGAGAATAGGATAGCACGTAG
AACACCTCCTCTGCTAGACCTTTATTTAGCCCGGGGTCGCCCTCGGATAC
AATCTCAGCAACGGAAAGTGACAGTTAGGCATACCAATGATCGTTGAATC
ATGCGTTGGTGACGTCGCCGTCGGAACTAGTAGCGTACTCAACCAAAAGC
TGTGACTGTAATGTGTAAGCGTTGGAAGGAAAGCCAATTGGCACCAATGC
CCGTTGAACTGCAAACGACGGCATTATCAACAGAGTATCAGCACACCTCG
CCTGATGACGTCATCTTTCCGTTATCCCTTCGTTCGTGCAGAGTCTCCCA
ATCAAACCGGACAGGGAATAATTTATTCCTCCGTTTATCCCTGGGCGACC
CCTTGTCCCATTCTTACTCCTGGTGAGCTCCGGAAATTATCGTTCTAGAA
AACAAATCAATTTGTAACATGGCAAGAGGTTTTGCCGGTGGTGCTTGACG
GACAATGAGGCACTGCGCCTGTTCGAAGCTTCATCTCGAGGGATCAGGCT
TCAACCTCTTGCCTGACTTCCAACTGGCTGAAGTCGCTCCCTAAATAGAC
ACTTGTTTCGGGGTGCCAAATTAGGTGCAATGGTTCAAGAGGTGCCTGCA
GTATGGGCGGGCATTCCACTATCGGTCTTGAGTCCTCGTGTATGGCGAAA
AGTCACGGAGGCCAGGCGGGTCCCATGAAAAAAAACACGCGCAGAGCTTC
ATCGTGGACCCCGTGGCCTTCTTACCTATTTCGGGTCTCTGTGCGATGTC
TGTGAGGCTCCCGTTGGTTGCCGTTGTCTCGTTCCCATGAAGCTTCATCC
GTGCGGGGTAGCGGTGTCAGGTTGCTCTCGTAAACGGTGAAAACTCCTTG
CATCAGCTTCATACCATTTTACCTCAGCGTCCTGCTCGACGTTCGGTTAG
CCCCGTTTAATGAAAAATGGCCGTGAGCGAGCGGTTTTGTTTCCGTCTGC
GCTGAACATGCTTCGATTCAAAGCTTGATGACCTATCACGTGCAGGCGCG
CTTGGGGTGCACTACAAGCACTGTCTGTGTCTAACCCAATCCCGGCCATG
TCGGTATTTCTCGCCCAGACGATATCAACGACTGTGGCTTCTACAGCGGT
GCGACTTGCGATTGCACCTGCGTCGAGGGTGAGGGAAGTGTTTGCGGCAG
CGGGACTGGCTTTGATTGTTCGAACCCAGCCTCGGAATGCGGTGAGTAGA
TGTCCAGGATATGACGGGGTTAAGGGCTTTGCTAAGTGCCAGGGAGAGAC
AGACAGGCAGGCAGATATATATATAGAGAGAGACGGAGACAGAGAGAAGG
GGGTGTTTTTGCGGTTAGACATGTCCAACAGGATCATATCTCACCCGGTT
ATCTAGCCATGCCCTCGGCGTATCTCCGCGGCCCGGCGCTTTCCTTGTTG
TCTTTTGCACCAAGGAAGACCTGTTAACCCGATACATATGTAGGTGCGAG
GTTACATGGCGGCGATGCTCAGCAGCTGTTGTGAGCGTACTGTGTTACCA
ACTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10977:2778..5432-

>mRNA_L-elsbetiae_contig10977.876.1 ID=mRNA_L-elsbetiae_contig10977.876.1|Name=mRNA_L-elsbetiae_contig10977.876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig10977:2778..5432- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACCGGTATGCGGTATTGAGGTCGCCGTCTGTACCACGCCGGTGTG
GTCCTGTGTAGATGGAACCGGTATGCGGTATTGAGGTCGCCGTCTGTACC
ACGCCGGTGTGGTCCTGTGTAGAGTCTCCCAATCAAACCGGACAGGGAAT
AATTTATTCCTCCGTTTATCCCTGGGCGACCCCTTGTCCCATTCTTACTC
CTGAGTCTCCCAATCAAACCGGACAGGGAATAATTTATTCCTCCGTTTAT
CCCTGGGCGACCCCTTGTCCCATTCTTACTCCTGACGATATCAACGACTG
TGGCTTCTACAGCGGTGCGACTTGCGATTGCACCTGCGTCGAGGGTGAGG
GAAGTGTTTGCGGCAGCGGGACTGGCTTTGATTGTTCGAACCCAGCCTCG
GAATGCGGTGAGTAGACGATATCAACGACTGTGGCTTCTACAGCGGTGCG
ACTTGCGATTGCACCTGCGTCGAGGGTGAGGGAAGTGTTTGCGGCAGCGG
GACTGGCTTTGATTGTTCGAACCCAGCCTCGGAATGCGGTGAGTAG
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