mRNA_L-elsbetiae_contig10968.870.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10968.870.1
Unique NamemRNA_L-elsbetiae_contig10968.870.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10968.870.1 vs. uniprot
Match: A0A086TF94_ACRC1 (Galactose oxidase-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086TF94_ACRC1)

HSP 1 Score: 52.8 bits (125), Expect = 2.660e-6
Identity = 25/69 (36.23%), Postives = 35/69 (50.72%), Query Frame = 1 
Query:    1 PQACLKTCIADAAFKTSYFALAEGSACYCGNPQPVDE------ERGICEEPCAGDVSSMCGGVKSFDLY 189
            P  C   C   A F     A+  G+ CYCG+P  +D       + G+C+ PCAG+ ++MCGG  S   Y
Sbjct:   52 PMVCTNAC---AEFGYMAAAMGHGNICYCGDPANIDTAGAKFVDEGLCDIPCAGNGTAMCGGGSSLSTY 117
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BLAST of mRNA_L-elsbetiae_contig10968.870.1 vs. uniprot
Match: A0A6H5KL41_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.240e-5
Identity = 21/52 (40.38%), Postives = 29/52 (55.77%), Query Frame = 1 
Query:   55 FALAEGSACYCGNPQPV----DEERGICEEPCAGDVSSMCGGVKSFDLYEIA 198
            FA+  G  C C          D + G+C+ PC GD S  CGGV SFD+Y+++
Sbjct:  138 FAVTRGDLCTCFTEADTGIFDDRKGGVCDAPCTGDSSQPCGGVDSFDVYQLS 189
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BLAST of mRNA_L-elsbetiae_contig10968.870.1 vs. uniprot
Match: A0A8K0TT44_9PEZI (WSC domain-containing protein n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TT44_9PEZI)

HSP 1 Score: 49.7 bits (117), Expect = 3.210e-5
Identity = 29/68 (42.65%), Postives = 34/68 (50.00%), Query Frame = 1 
Query:   13 LKTCIA---DAAFKTSYFALAEGSACYCGNP-----QPVDEERGICEEPCAGDVSSMCGGVKSFDLYE 192
            ++TCIA   D  +K  Y  L     CYCGN       PV    G+CE PC GD S +CGG     LYE
Sbjct:  386 VETCIAFCNDRGYK--YAGLEYQRECYCGNDVAADRAPVKGILGVCEMPCKGDNSQICGGYGGLSLYE 451
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10968.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A086TF94_ACRC12.660e-636.23Galactose oxidase-like protein n=1 Tax=Acremonium ... [more]
A0A6H5KL41_9PHAE1.240e-540.38WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8K0TT44_9PEZI3.210e-542.65WSC domain-containing protein n=1 Tax=Plectosphaer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10968contigL-elsbetiae_contig10968:6282..6491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.1509087-CDS-L-elsbetiae_contig10968:6281..64911622815313.1509087-CDS-L-elsbetiae_contig10968:6281..6491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10968 6282..6491 -
1691682831.9145331-CDS-L-elsbetiae_contig10968:6281..64911691682831.9145331-CDS-L-elsbetiae_contig10968:6281..6491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10968 6282..6491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10968.870.1prot_L-elsbetiae_contig10968.870.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10968 6282..6491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10968.870.1

>prot_L-elsbetiae_contig10968.870.1 ID=prot_L-elsbetiae_contig10968.870.1|Name=mRNA_L-elsbetiae_contig10968.870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
PQACLKTCIADAAFKTSYFALAEGSACYCGNPQPVDEERGICEEPCAGDV
SSMCGGVKSFDLYEIADNSL
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mRNA from alignment at L-elsbetiae_contig10968:6282..6491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10968.870.1 ID=mRNA_L-elsbetiae_contig10968.870.1|Name=mRNA_L-elsbetiae_contig10968.870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig10968:6282..6491- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGGCGTGCTTGAAGACATGCATCGCCGATGCAGCCTTCAAGACGTC
CTACTTTGCACTTGCTGAAGGAAGTGCCTGCTATTGCGGTAACCCCCAAC
CCGTCGATGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGATGTA
TCCTCGATGTGCGGAGGTGTCAAGTCGTTCGACCTGTACGAGATAGCCGA
TAATTCCTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10968:6282..6491-

>mRNA_L-elsbetiae_contig10968.870.1 ID=mRNA_L-elsbetiae_contig10968.870.1|Name=mRNA_L-elsbetiae_contig10968.870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig10968:6282..6491- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGGCGTGCTTGAAGACATGCATCGCCGATGCAGCCTTCAAGACGTC
CTACTTTGCACTTGCTGAAGGAAGTGCCTGCTATTGCGGTAACCCCCAAC
CCGTCGATGAAGAACGCGGTATCTGCGAGGAGCCGTGCGCCGGGGATGTA
TCCTCGATGTGCGGAGGTGTCAAGTCGTTCGACCTGTACGAGATAGCCGA
TAATTCCTTGCCGCAGGCGTGCTTGAAGACATGCATCGCCGATGCAGCCT
TCAAGACGTCCTACTTTGCACTTGCTGAAGGAAGTGCCTGCTATTGCGGT
AACCCCCAACCCGTCGATGAAGAACGCGGTATCTGCGAGGAGCCGTGCGC
CGGGGATGTATCCTCGATGTGCGGAGGTGTCAAGTCGTTCGACCTGTACG
AGATAGCCGATAATTCCTTG
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