mRNA_L-elsbetiae_contig10967.869.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10967.869.1
Unique NamemRNA_L-elsbetiae_contig10967.869.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: D7FL45_ECTSI (Plastoquinol--plastocyanin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL45_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.360e-26
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:  723 LQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            ++GDATYLVV EDK +QDYGIVAVCTHLGCVVPW+KAENKFMCPCHGSQYDQTGK
Sbjct:  130 IKGDATYLVVTEDKKVQDYGIVAVCTHLGCVVPWNKAENKFMCPCHGSQYDQTGK 184
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: F0YEX1_AURAN (Uncharacterized protein petC n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEX1_AURAN)

HSP 1 Score: 110 bits (276), Expect = 2.060e-25
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 3 
Query:  714 LMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            +  L+GDATYL+V EDKTI+DYGI AVCTHLGCVVPW+KA NK+MCPCHGSQYDQTGK
Sbjct:   70 VQGLKGDATYLIVDEDKTIRDYGINAVCTHLGCVVPWNKAANKYMCPCHGSQYDQTGK 127
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: W7TXJ0_9STRA (Plastoquinol--plastocyanin reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXJ0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.650e-24
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 3 
Query:  687 TYEISFNCTLMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            T++      +  L+GDATYL+VKEDKTI++YG+ AVCTHLGCVVPW+KAE+KF+CPCHGSQYD+TGK
Sbjct:  130 THQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGK 196
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: A0A830H9Z6_9CHLO (Cytochrome b6-f complex iron-sulfur subunit 1 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H9Z6_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 1.210e-23
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 3 
Query:  714 LMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTG 884
            +  L+GDATYL+VKEDKTI+ YG+ AVCTHLGCVVPW+ AENKFMCPCHGSQYD TG
Sbjct:   99 VQGLKGDATYLIVKEDKTIEKYGLNAVCTHLGCVVPWNAAENKFMCPCHGSQYDATG 155
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: A0A2D5MSC7_9BACT (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MSC7_9BACT)

HSP 1 Score: 106 bits (264), Expect = 1.950e-23
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:  714 LMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            +  L+GDATYLVV EDK I+DYGI AVCTHLGCVVPW+K+ NKFMCPCHGSQYD++GK
Sbjct:   93 VQGLKGDATYLVVDEDKKIRDYGINAVCTHLGCVVPWNKSANKFMCPCHGSQYDESGK 150
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: A0A7S3NJN7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJN7_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.460e-23
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:  714 LMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            +  L+GDATYL+V E K I+DYGI AVCTHLGCVVPW+KA NK+MCPCHGSQYDQTGK
Sbjct:  116 VQGLKGDATYLIVDEGKVIRDYGINAVCTHLGCVVPWNKAANKYMCPCHGSQYDQTGK 173
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: UPI00202003BD (cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Chroococcidiopsis sp. CCMEE 29 TaxID=155894 RepID=UPI00202003BD)

HSP 1 Score: 104 bits (260), Expect = 5.450e-23
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 3 
Query:  714 LMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            +  L+GD TYL+V EDKTI++YG+ AVCTHLGCVVPW+ +ENKFMCPCHGSQYD TGK
Sbjct:   82 VQGLKGDPTYLIVTEDKTIENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDNTGK 139
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: A0A836CBH8_9STRA (Plastoquinol--plastocyanin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.020e-23
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 3 
Query:  723 LQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            ++GDATYL VK+DKTIQD+GIVAVCTHLGCVVPW +AENKF+CPCHGSQY+  GK
Sbjct:  127 IKGDATYLTVKQDKTIQDFGIVAVCTHLGCVVPWVQAENKFICPCHGSQYNMDGK 181
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=UCRIA_CYAPA)

HSP 1 Score: 105 bits (263), Expect = 8.550e-23
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 3 
Query:  558 PNRCHTGSGVGGHSPAVPSLDIFIASRVQHYPPSSTMKVELRFTYEISFNCTLMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            P +   G+G G  +      D+ ++S ++ + P      +               L+GDATYL+VKED T+++YG+ AVCTHLGCVVPW+ +ENKFMCPCHGSQYD+TGK
Sbjct:  102 PPKAGGGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQ--------------GLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGK 197
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BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Match: UPI001A0BDCC3 (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI001A0BDCC3)

HSP 1 Score: 103 bits (258), Expect = 1.020e-22
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 3 
Query:  723 LQGDATYLVVKEDKTIQDYGIVAVCTHLGCVVPWSKAENKFMCPCHGSQYDQTGK 887
            L+GD TYLVVKED +I+ YGI A+CTHLGCVVPW+ AENKFMCPCHGSQYD TGK
Sbjct:   84 LKGDPTYLVVKEDLSIESYGINAICTHLGCVVPWNPAENKFMCPCHGSQYDSTGK 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10967.869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL45_ECTSI2.360e-2689.09Plastoquinol--plastocyanin reductase n=2 Tax=Ectoc... [more]
F0YEX1_AURAN2.060e-2581.03Uncharacterized protein petC n=1 Tax=Aureococcus a... [more]
W7TXJ0_9STRA1.650e-2468.66Plastoquinol--plastocyanin reductase n=2 Tax=Monod... [more]
A0A830H9Z6_9CHLO1.210e-2378.95Cytochrome b6-f complex iron-sulfur subunit 1 n=1 ... [more]
A0A2D5MSC7_9BACT1.950e-2377.59Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A7S3NJN7_9STRA3.460e-2377.59Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI00202003BD5.450e-2374.14cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A836CBH8_9STRA8.020e-2380.00Plastoquinol--plastocyanin reductase n=1 Tax=Tribo... [more]
UCRIA_CYAPA8.550e-2345.45Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UPI001A0BDCC31.020e-2280.00Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10967contigL-elsbetiae_contig10967:886..2082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue8.8e-24
Seed eggNOG ortholog2880.D7FL45
Preferred namePETC
KEGG rclassRC01002
KEGG koko:K02636
KEGG ReactionR03817,R08409
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009512,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009767,GO:0009941,GO:0009987,GO:0010196,GO:0015979,GO:0016020,GO:0016491,GO:0019684,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046028,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0070069,GO:0071944,GO:0080167,GO:0098542,GO:1990066
EggNOG free text desc.oxidoreductase activity, acting on diphenols and related substances as donors
EggNOG OGsCOG0723@1,KOG1671@2759
EC1.10.9.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Exons1
Model size1197
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10967.869.1prot_L-elsbetiae_contig10967.869.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10967 1551..1874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.0989401-UTR-L-elsbetiae_contig10967:885..15501622815313.0989401-UTR-L-elsbetiae_contig10967:885..1550Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10967 886..1550 +
1691682831.8833492-UTR-L-elsbetiae_contig10967:885..15501691682831.8833492-UTR-L-elsbetiae_contig10967:885..1550Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10967 886..1550 +
1622815313.1201615-UTR-L-elsbetiae_contig10967:1874..20821622815313.1201615-UTR-L-elsbetiae_contig10967:1874..2082Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10967 1875..2082 +
1691682831.9038827-UTR-L-elsbetiae_contig10967:1874..20821691682831.9038827-UTR-L-elsbetiae_contig10967:1874..2082Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10967 1875..2082 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.1112013-CDS-L-elsbetiae_contig10967:1550..18741622815313.1112013-CDS-L-elsbetiae_contig10967:1550..1874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10967 1551..1874 +
1691682831.8948598-CDS-L-elsbetiae_contig10967:1550..18741691682831.8948598-CDS-L-elsbetiae_contig10967:1550..1874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10967 1551..1874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10967.869.1

>prot_L-elsbetiae_contig10967.869.1 ID=prot_L-elsbetiae_contig10967.869.1|Name=mRNA_L-elsbetiae_contig10967.869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MKVELRFTYEISFNCTLMALQGDATYLVVKEDKTIQDYGIVAVCTHLGCV
VPWSKAENKFMCPCHGSQYDQTGKASCCFFMLLRLVSAWRLEVAGLRIVT
VFSVLCT*
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mRNA from alignment at L-elsbetiae_contig10967:886..2082+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10967.869.1 ID=mRNA_L-elsbetiae_contig10967.869.1|Name=mRNA_L-elsbetiae_contig10967.869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1197bp|location=Sequence derived from alignment at L-elsbetiae_contig10967:886..2082+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACGGTACCGTGTTCATGTTTGGCCTGTGGTGTTTTTAGCGCGAAGGT
CCTGTCCCGATTGATGTTTCAGTACCACGGGCTGACTGAACAGCAGGTTA
GTGTGTACGGGGCCCTGGGATTAGATGTTTTATTATAGTAGGGGAGGGTG
TTTATTTTACTGCCCCCATTAGTCGCGCTCAGGGCGACCCATCAGTGCCG
GCATCATTGTTTTCTCTAGGGTTGATTCAGTGCGGCATTGCTTGTGACGG
ATGTTAGCTGGCCTTCGTCGCTGAGTCTCCCCTTCCCCCCGCAATGTATC
CTGTTTTGTGTGTATATTGACAATTTACAGGGTGACGGTATCTACGACTC
AGTTTTCCCAACATCCCTGATTTGAACTATTCCGGCTCTTCCCCACCCCG
GTCACCTTTGCCGAACCCGTCCATGCCTTCCTTTTTTTTTCCCACGACCC
ATGTACATGTTACATGTATATGTATATTATTTTTCAGCCCATCATTGGCA
TAAATATGTGTCATCTGCGCCACTGGCCCCGTTCCTCCACTGCGACTAGC
TAGACGACCCAACCGGTGTCACACAGGAAGTGGGGTTGGTGGACACTCTC
CTGCGGTGCCTTCCTTGGATATTTTCATTGCGAGCAGGGTTCAGCACTAC
CCACCCTCGTCAACAATGAAAGTCGAATTACGATTTACTTACGAAATCTC
TTTCAATTGCACCTTAATGGCTCTCCAGGGTGACGCAACCTACTTGGTGG
TGAAGGAGGACAAGACGATCCAGGACTACGGCATCGTGGCGGTGTGCACC
CACTTGGGATGCGTCGTCCCCTGGAGCAAAGCGGAGAACAAGTTCATGTG
CCCCTGCCACGGCTCTCAATACGACCAGACCGGGAAGGCAAGCTGCTGTT
TTTTTATGCTGTTGCGGCTGGTTTCGGCGTGGCGGTTGGAGGTGGCTGGT
CTCCGCATCGTTACCGTCTTTTCTGTTTTATGTACATAAAAGTGGTTTAG
TGTTACGAAAGCTCTACTGGGTATTAACAAGGACATAGAGTCAGCCGCCG
TCGGCAAACAAGTGTAGCCTTACGTCAACTTGTAGAGGTAGGTGACCTCC
ACAATCATTTGTGTCGGCGCATAACTGATACTCACTATGTCGTTCATAGG
ATATGCCTTTGAGGGTCACACCGCTAAAATATGTACGGAGACCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10967:886..2082+

>mRNA_L-elsbetiae_contig10967.869.1 ID=mRNA_L-elsbetiae_contig10967.869.1|Name=mRNA_L-elsbetiae_contig10967.869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig10967:886..2082+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGTCGAATTACGATTTACTTACGAAATCTCTTTCAATTGCACCTT
AATGGCTCTCCAGGGTGACGCAACCTACTTGGTGGTGAAGGAGGACAAGA
CGATCCAGGACTACGGCATCGTGGCGGTGTGCACCCACTTGGGATGCGTC
GTCCCCTGGAGCAAAGCGGAGAACAAGTTCATGTGCCCCTGCCACGGCTC
TCAATACGACCAGACCGGGAAGGCAAGCTGCTGTTTTTTTATGCTGTTGC
GGCTGGTTTCGGCGTGGCGGTTGGAGGTGGCTGGTCTCCGCATCGTTACC
GTCTTTTCTGTTTTATGTACATAAATGAAAGTCGAATTACGATTTACTTA
CGAAATCTCTTTCAATTGCACCTTAATGGCTCTCCAGGGTGACGCAACCT
ACTTGGTGGTGAAGGAGGACAAGACGATCCAGGACTACGGCATCGTGGCG
GTGTGCACCCACTTGGGATGCGTCGTCCCCTGGAGCAAAGCGGAGAACAA
GTTCATGTGCCCCTGCCACGGCTCTCAATACGACCAGACCGGGAAGGCAA
GCTGCTGTTTTTTTATGCTGTTGCGGCTGGTTTCGGCGTGGCGGTTGGAG
GTGGCTGGTCTCCGCATCGTTACCGTCTTTTCTGTTTTATGTACATAA
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