mRNA_L-elsbetiae_contig10966.868.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10966.868.1
Unique NamemRNA_L-elsbetiae_contig10966.868.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10966.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10966contigL-elsbetiae_contig10966:2142..3335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10966.868.1prot_L-elsbetiae_contig10966.868.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10966 2142..3315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.0425498-CDS-L-elsbetiae_contig10966:2141..24611622815313.0425498-CDS-L-elsbetiae_contig10966:2141..2461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10966 2142..2461 -
1691682831.8453143-CDS-L-elsbetiae_contig10966:2141..24611691682831.8453143-CDS-L-elsbetiae_contig10966:2141..2461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10966 2142..2461 -
1622815313.054138-CDS-L-elsbetiae_contig10966:3299..33151622815313.054138-CDS-L-elsbetiae_contig10966:3299..3315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10966 3300..3315 -
1691682831.8576481-CDS-L-elsbetiae_contig10966:3299..33151691682831.8576481-CDS-L-elsbetiae_contig10966:3299..3315Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10966 3300..3315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815313.065397-UTR-L-elsbetiae_contig10966:3315..33351622815313.065397-UTR-L-elsbetiae_contig10966:3315..3335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10966 3316..3335 -
1691682831.8690498-UTR-L-elsbetiae_contig10966:3315..33351691682831.8690498-UTR-L-elsbetiae_contig10966:3315..3335Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10966 3316..3335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10966.868.1

>prot_L-elsbetiae_contig10966.868.1 ID=prot_L-elsbetiae_contig10966.868.1|Name=mRNA_L-elsbetiae_contig10966.868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MDTSKRDLYSSDEDPNDPAFAEGSDEDETVQQKRRRGRGSGNARATKRRQ
IVDVSSDSDEGVELDLDIVNLCTSGGEDSDGGSSDADENPRRGTGAFSNG
SSAASSGNTAAA
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mRNA from alignment at L-elsbetiae_contig10966:2142..3335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10966.868.1 ID=mRNA_L-elsbetiae_contig10966.868.1|Name=mRNA_L-elsbetiae_contig10966.868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig10966:2142..3335- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCTACTGGCTACTGGCGATGGATACGTCGAAACGTGAGGGCGAAAGA
ATGTCAAGCCTTGTCCCTGGCTTTTCAATGCTACAGCTGACCTGCCTGCC
TGCCTGCCTGCCTGCCTGCCTGCTGCCCTTGGTTGAGGCGCCTGCTGATC
TCCTGTGCTAACTCGTCGGTGGAATGCTCTGCTATCTATCTGTGGCTGTT
GAGGCCAGGATTCACTTTGGCGCATTATCGGACTACGTCGCAAGTGCAAA
ATCTCAGTTTCCATTCGAACCCTGGGTTGCTTCCTCCATCCCTGGAAAAA
CGGGTTAGAGAGTTCGCCGTGCAAATTCGCTGCGTCCGTTTGAAATGCAT
GTTACCTTACAATAGTAGGATGCTGCTGGTCGTACTAGATAATGGTACGC
CTGACCTGGTAGCATGTTGAATGCCACGAGGGAAAAAATCGCGCCTACTG
AATGGTAAGTGGTATTCACTTTTGTGCCACTTCGAATCATGATACACACA
CAGACTAGACTACTAGACTATGTACATATGTACTTCGAAGTACATACTCC
TCCTACATATTTGTGTGCGTTGGTGTAGATAGAGTATTCATCTCGAAATC
GAAACATTCCCGTCATCACTGCTGCTGCTGCTACTGTGGCCTATCGATAC
CCCGAAAGGGCTTGACATCGAAAGGTGGGTCGAGACCGCTCCTTACGACG
AGAATGCTGGGGGATTGTTGGCCTCTATCGCATATATACCCTCGGTTTGG
CGAGTTCATAAATCAACGATTCTCTCGTTTCCCCCCTCCCTCCCTTTTCC
GTGCCGGCGGGGACGGTTTTATCTACTCCGTATCTGGTTTTATCTACTCC
GTATCTGGCGCTCCTTGCGGGCAGGCGACTTATACTCTTCCGACGAAGAT
CCAAACGATCCAGCGTTTGCCGAGGGCAGCGATGAAGACGAAACCGTTCA
GCAAAAGAGGCGGCGCGGCCGGGGGTCGGGCAATGCGCGCGCGACCAAGC
GCAGGCAGATAGTGGACGTCAGCAGCGACTCCGACGAGGGCGTGGAGCTA
GATCTAGACATCGTCAACCTCTGCACCAGCGGCGGCGAGGACAGCGACGG
GGGCAGCAGTGACGCCGACGAGAACCCTCGCCGCGGCACCGGTGCTTTCT
CGAACGGCTCCAGCGCTGCTAGCAGCGGAAACACTGCCGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10966:2142..3335-

>mRNA_L-elsbetiae_contig10966.868.1 ID=mRNA_L-elsbetiae_contig10966.868.1|Name=mRNA_L-elsbetiae_contig10966.868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig10966:2142..3335- (Laminarionema elsbetiae ELsaHSoW15)
ATGGATACGTCGAAACATGGATACGTCGAAACGCGACTTATACTCTTCCG
ACGAAGATCCAAACGATCCAGCGTTTGCCGAGGGCAGCGATGAAGACGAA
ACCGTTCAGCAAAAGAGGCGGCGCGGCCGGGGGTCGGGCAATGCGCGCGC
GACCAAGCGCAGGCAGATAGTGGACGTCAGCAGCGACTCCGACGAGGGCG
TGGAGCTAGATCTAGACATCGTCAACCTCTGCACCAGCGGCGGCGAGGAC
AGCGACGGGGGCAGCAGTGACGCCGACGAGAACCCTCGCCGCGGCACCGG
TGCTTTCTCGAACGGCTCCAGCGCTGCTAGCAGCGGAAACACTGCCGCCG
CCGCGACTTATACTCTTCCGACGAAGATCCAAACGATCCAGCGTTTGCCG
AGGGCAGCGATGAAGACGAAACCGTTCAGCAAAAGAGGCGGCGCGGCCGG
GGGTCGGGCAATGCGCGCGCGACCAAGCGCAGGCAGATAGTGGACGTCAG
CAGCGACTCCGACGAGGGCGTGGAGCTAGATCTAGACATCGTCAACCTCT
GCACCAGCGGCGGCGAGGACAGCGACGGGGGCAGCAGTGACGCCGACGAG
AACCCTCGCCGCGGCACCGGTGCTTTCTCGAACGGCTCCAGCGCTGCTAG
CAGCGGAAACACTGCCGCCGCC
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