mRNA_L-elsbetiae_contig10964.866.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10964.866.1
Unique NamemRNA_L-elsbetiae_contig10964.866.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10964.866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10964contigL-elsbetiae_contig10964:1854..3007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.915877-CDS-L-elsbetiae_contig10964:1854..20051622815312.915877-CDS-L-elsbetiae_contig10964:1854..2005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10964 1855..2005 -
1691682831.7932642-CDS-L-elsbetiae_contig10964:1854..20051691682831.7932642-CDS-L-elsbetiae_contig10964:1854..2005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10964 1855..2005 -
1622815312.9320092-CDS-L-elsbetiae_contig10964:2966..30071622815312.9320092-CDS-L-elsbetiae_contig10964:2966..3007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10964 2967..3007 -
1691682831.80203-CDS-L-elsbetiae_contig10964:2966..30071691682831.80203-CDS-L-elsbetiae_contig10964:2966..3007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10964 2967..3007 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10964.866.1prot_L-elsbetiae_contig10964.866.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10964 1855..3007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10964.866.1

>prot_L-elsbetiae_contig10964.866.1 ID=prot_L-elsbetiae_contig10964.866.1|Name=mRNA_L-elsbetiae_contig10964.866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
CRLRAKGAGSIGSRSGAPTQGVMDGLRETAAGEHCDGAGEDDSHVPVLVS
RFSAFSRDQLEFQR
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mRNA from alignment at L-elsbetiae_contig10964:1854..3007-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10964.866.1 ID=mRNA_L-elsbetiae_contig10964.866.1|Name=mRNA_L-elsbetiae_contig10964.866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1154bp|location=Sequence derived from alignment at L-elsbetiae_contig10964:1854..3007- (Laminarionema elsbetiae ELsaHSoW15)
TGCCGACTTCGTGCAAAAGGAGCGGGCTCGATCGGTAGCAGGTGCGTGGA
AAAAAACTGAAAAATGTCGCCGCTGGTTTAAAACAGCAGCAGCGACTTGC
TTCGGCCCACGGCCGCCGCTCTCGACAAGCAAAGTTTACCGTATGCAGCA
ATAAGCACCACAGTGCAGTAATATAGGTTTTCTCTCTTGGAGCAAAGTTT
CGTAGTAAATGACCATCACTTCGCGGAGCACTGGTGAAAAAAGTTGCTGA
ATCTTGTTCCATTTGTAAGATCTCGCCGCCCCATGCCGTTGGACACCCGC
ATGTCTGCGCCGGCTTCCTTGTGGGTTAGGGTTAGATTATTATCATGAGT
CCCTAGTGAACTACCTTGCCTTTCATCTCGCAAAGTTTGGCGGCCAAAAC
TGATCAGTTCGCTTCGTTCTCACGAAATAGGTTGCCGATTTAGTTCAAAT
TTTAGACGTTTCGCCGCATCCACGCCAGTTAGCGTCGCCTTTGTTGATGG
CCGAGGACCCTTATGAGCATAAGTAATGGCACAGAACGACGGTTAGGTTT
GCGCTTTCAAGGCTGGCACCGTCGTTGGACGCGAGCTGTGCTCGTTGAGC
AGTTCACGGAGAGTTTATTTTGTATCCCCAGCCCGCGTTGGCAGAGTTCT
GTTAGACGGCGGGAGGGTCGGTACATCTGGATTCAACTTGATTCAACCCC
AAATATGTGGTCGATAGCGAGGTTTTGGGTGTTCATCGCTGCGTGTACAG
CCCGTGGTCTTTGGGAGGTCGAGTTCCGGCATTGAGATATGCGTGATAGC
GGTTGTACGTGCGTGCTAAAACACCCCCCATGAACACGAAATCCAAAGAC
GTGGTTAGGTGACCCCAAGTTTTTTCTCTCATCATCTGTTGCGAACGGCT
CCCACGAGTTATGGAAGTGAGCTCACTCAATTATGGTTAGCTGCACACGT
AAACACCGGGAAATGGATCTCTCTTGTCACCGCTGAAAATATTACACGAC
AGGTCGGGTGCCCCCACTCAGGGAGTAATGGACGGCCTTCGCGAGACGGC
GGCAGGGGAACACTGTGATGGTGCTGGTGAAGATGACAGTCACGTTCCTG
TGTTGGTGTCTCGTTTTAGTGCATTCTCCAGAGACCAATTAGAGTTCCAG
AGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10964:1854..3007-

>mRNA_L-elsbetiae_contig10964.866.1 ID=mRNA_L-elsbetiae_contig10964.866.1|Name=mRNA_L-elsbetiae_contig10964.866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig10964:1854..3007- (Laminarionema elsbetiae ELsaHSoW15)
TGCCGACTTCGTGCAAAAGGAGCGGGCTCGATCGGTAGCAGTGCCGACTT
CGTGCAAAAGGAGCGGGCTCGATCGGTAGCAGGTCGGGTGCCCCCACTCA
GGGAGTAATGGACGGCCTTCGCGAGACGGCGGCAGGGGAACACTGTGATG
GTGCTGGTGAAGATGACAGTCACGTTCCTGTGTTGGTGTCTCGTTTTAGT
GCATTCTCCAGAGACCAATTAGAGTTCCAGAGGGTCGGGTGCCCCCACTC
AGGGAGTAATGGACGGCCTTCGCGAGACGGCGGCAGGGGAACACTGTGAT
GGTGCTGGTGAAGATGACAGTCACGTTCCTGTGTTGGTGTCTCGTTTTAG
TGCATTCTCCAGAGACCAATTAGAGTTCCAGAGG
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