mRNA_L-elsbetiae_contig10960.863.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10960.863.1
Unique NamemRNA_L-elsbetiae_contig10960.863.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10960.863.1 vs. uniprot
Match: A0A6H5L7S1_9PHAE (DOT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S1_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.100e-56
Identity = 118/178 (66.29%), Postives = 130/178 (73.03%), Query Frame = 1 
Query:   43 MRCDGDAEARSRRRAVASLLVFAKELEKAGRISKASKGLLKELIVHENLEVMSVGEALARAEIGQRQG--------------LPLQILDEQIKK----------RASKSHQELFEICPLEQAHLLSQQDTAALAEGSDTKSLVYGEIDFWSFYDVIKVAADGLGTTVTSSRHHGQDQD 504
            MRCD D EA SRRRAVASLLVFAKELE+AGRISKASKGLLKELIVHENLEVMS+GE LAR + G+ Q               + L +LDEQI K          RASKSH+ELFEICPLEQAHLLSQ+DT  LA+GSDTKSLVYGEIDFWSFYDV+KVAA  + T      + GQ QD
Sbjct:    1 MRCDWDHEALSRRRAVASLLVFAKELERAGRISKASKGLLKELIVHENLEVMSIGERLARVDSGKNQHXXXXXXXXXXXXXVISLHVLDEQISKCTRCRVLVERRASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAHDIYTEPRC--YDGQRQD 176
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BLAST of mRNA_L-elsbetiae_contig10960.863.1 vs. uniprot
Match: D8LP02_ECTSI (DOT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP02_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 6.600e-27
Identity = 71/121 (58.68%), Postives = 77/121 (63.64%), Query Frame = 1 
Query:   43 MRCDGDAEARSRRRAVASLLVFAKELEKAGRISKASKGLLKELIVHENLEVMSVGEALARAEIGQRQGLPLQILDEQIKKRASKSHQELFEICPLEQAHLLSQQDTAALAEGSDTKSLVYG 405
            MRCD D EARSRRRAVASLLVFAKELE+AGRISKASKGLLKE                                     +RASKSH+ELFEICPLEQAHLLSQ+DT  LA+GSDTK   +G
Sbjct:    1 MRCDWDHEARSRRRAVASLLVFAKELERAGRISKASKGLLKE-------------------------------------RRASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKIAAHG 84
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BLAST of mRNA_L-elsbetiae_contig10960.863.1 vs. uniprot
Match: A0A7S3YBN8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBN8_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 1.750e-11
Identity = 45/127 (35.43%), Postives = 71/127 (55.91%), Query Frame = 1 
Query:   88 VASLLVFAKELEKAGRISKASKGLLKELIVHENLEVMSVGEALARAEIGQRQGLPLQILDEQ---IKKRASKSHQELFEICPLEQAHLLSQQDTAALAEGSDTKSLVYGEIDFWSFYDVIKVAADGL 459
            ++ LL  A+ + K G IS+ SK  LK  IV  N +++++  +L +  + +       ++DE    I  R       L+  CPLE+AHLL+ +D     +    K+LVYGE+DF SFY+V++ AA GL
Sbjct:   14 LSKLLHLAQAMTKTGFISQTSKCFLKNAIVARNEKLLNLAGSLTKNLVIE------DVIDELNGIIAARTKAEWAALYGECPLERAHLLASEDQKEAVDSELVKNLVYGEVDFDSFYEVLRHAAQGL 134
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BLAST of mRNA_L-elsbetiae_contig10960.863.1 vs. uniprot
Match: A0A836CL46_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL46_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.560e-10
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:  166 ELIVHENLEVMSVGEALARAEIGQRQGLPLQILDEQIKKRASKSHQELFEICPLEQAHLLSQQDTAALAEGSDTKSLVYGEIDFWSFYDVIKVAADG 456
            EL+V++N +++  G  L+ AE       PL      I  RA +S +E+   C LE+AH+L+  D  ++  G+D KSLVYGEIDF SFY+V+++AA G
Sbjct:   31 ELVVNQNEDLL--GADLSDAEAALNALKPL------IMGRAKRSFEEVISTCSLERAHMLATNDARSMPAGTDIKSLVYGEIDFVSFYEVMQLAAQG 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10960.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L7S1_9PHAE1.100e-5666.29DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LP02_ECTSI6.600e-2758.68DOT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3YBN8_HETAK1.750e-1135.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CL46_9STRA1.560e-1042.27Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10960contigL-elsbetiae_contig10960:1772..4285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.9e-23
Seed eggNOG ortholog2880.D8LP02
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2S1KF@2759
Ec32 ortholog descriptionDOT1 histone methyltransferase
Ec32 orthologEc-06_007110.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size593
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10960.863.1prot_L-elsbetiae_contig10960.863.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10960 1814..4285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.7662356-UTR-L-elsbetiae_contig10960:1771..18131622815312.7662356-UTR-L-elsbetiae_contig10960:1771..1813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10960 1772..1813 +
1691682831.705548-UTR-L-elsbetiae_contig10960:1771..18131691682831.705548-UTR-L-elsbetiae_contig10960:1771..1813Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10960 1772..1813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.7759874-CDS-L-elsbetiae_contig10960:1813..19371622815312.7759874-CDS-L-elsbetiae_contig10960:1813..1937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 1814..1937 +
1691682831.7224336-CDS-L-elsbetiae_contig10960:1813..19371691682831.7224336-CDS-L-elsbetiae_contig10960:1813..1937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 1814..1937 +
1622815312.7855232-CDS-L-elsbetiae_contig10960:2335..24461622815312.7855232-CDS-L-elsbetiae_contig10960:2335..2446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 2336..2446 +
1691682831.7299662-CDS-L-elsbetiae_contig10960:2335..24461691682831.7299662-CDS-L-elsbetiae_contig10960:2335..2446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 2336..2446 +
1622815312.7970195-CDS-L-elsbetiae_contig10960:3436..35491622815312.7970195-CDS-L-elsbetiae_contig10960:3436..3549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 3437..3549 +
1691682831.738239-CDS-L-elsbetiae_contig10960:3436..35491691682831.738239-CDS-L-elsbetiae_contig10960:3436..3549Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 3437..3549 +
1622815312.808644-CDS-L-elsbetiae_contig10960:4084..42851622815312.808644-CDS-L-elsbetiae_contig10960:4084..4285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 4085..4285 +
1691682831.7509146-CDS-L-elsbetiae_contig10960:4084..42851691682831.7509146-CDS-L-elsbetiae_contig10960:4084..4285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10960 4085..4285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10960.863.1

>prot_L-elsbetiae_contig10960.863.1 ID=prot_L-elsbetiae_contig10960.863.1|Name=mRNA_L-elsbetiae_contig10960.863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MRCDGDAEARSRRRAVASLLVFAKELEKAGRISKASKGLLKELIVHENLE
VMSVGEALARAEIGQRQGLPLQILDEQIKKRASKSHQELFEICPLEQAHL
LSQQDTAALAEGSDTKSLVYGEIDFWSFYDVIKVAADGLGTTVTSSRHHG
QDQDDATLNSSSADGEDEEEEEKQEQGQYTPEG
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mRNA from alignment at L-elsbetiae_contig10960:1772..4285+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10960.863.1 ID=mRNA_L-elsbetiae_contig10960.863.1|Name=mRNA_L-elsbetiae_contig10960.863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2514bp|location=Sequence derived from alignment at L-elsbetiae_contig10960:1772..4285+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGCTGCCTGGCTAGCGCATTGCATGCTTGACTTGAAAGAATGCGTTG
CGATGGGGATGCTGAAGCGCGGTCCAGGCGGAGGGCTGTAGCAAGCCTGC
TCGTCTTTGCCAAGGAGCTCGAGAAGGCTGGGAGGATCTCCAAGGCGAGC
AAGGGGCTCCTGAAAGGTACGTGAAGCACCAGCTCGCTCCTCCTCGCGGA
TGTTTGGCACATGGCTGCGTGATGTTGGCCATGGTGTTGCCTCAAACCTG
TGGCACAGCTGGAGCCCTGGGTACTACGTAATACTCTGCTGCTTAGGTAC
ATGCATACATACATGACCCAAGAAAAACAAACGTTGATTTTGAAAATTGA
AAAAAAACACGTTTGGATCTTCGCCTTTGGAGGTCAGGTGCGGCCAAACT
TGCACTTGTGTAGCCTATTAGTATGGTAGTCAGCAGTGGAGGGTGGCGAG
GGTGCATACTCAGGGATGGTACCGCACACGGATAAATTGCTTGTCACCTC
GCCTCGTAGCTTTTGAAGTGCCCCGCCCTCTCTCCCTTTTTGCTTTTGTT
GTGTGTGTGTTCAGAGCTGATCGTCCACGAGAACCTCGAAGTGATGTCGG
TCGGAGAGGCTCTAGCGAGGGCCGAGATCGGTCAGCGGCAAGGCCTTCCC
CTGCAGATCCTCGACGAGCAGATTAGTGAGCCACAAGAGAGAGAGAAAAA
AGCGCTGTAACGCAGAACAAACAAACGACGATTGCATCCACATACCTCCT
GCGTACTTCTGCGGCAGCCTACAGCCTGCCTACACACCCCACGACTGATG
CGTGTACAACCGTAGTACATCTAATCCACAGACGGGGGGAGTAGGGGGCC
TATGGGGAAAGGAATCCTTCTGTGTGGCCACGGTTCAGTACTCTGGCAAG
ATATCCTCGTGACAGGGAGCCCATCGAGCACTCGAAATAAATGTGAAGAA
AAAAAAAATCCTAATGTATCTAGGATTGGGTAGATCTAGTAGCTAGAACC
AAGACTACATATGTATTTACATGCGTAGATAGTCTACCGTCCGTATTACA
CTAGATGTCTTTTGTGTACCAGCCATTACTTCTCAGGGGCATGATCCATA
TTCCGCTCTCGTTAGGAGCCGTGACCCCTCGAGCCCGTGGCCACCAGAAC
ACTTCCAATGCCGTTGCTGCGTCGCGACAACTGACACAACTGAAGCAGAA
GAAGCGGCTCTCAATCTTGATCTTGATGGCGCGTGCTTGACTTAATTCAA
TAAACTTATTGAAAATTGAAAAATTTCGAATGTATGTAGACTAGTAGATA
GTCTAGTTTATGTAGACAGTCTAGCTACACTTTGTTGATACACGGCGATT
GGTGCGCGCGGTGTGCTAATGTTCCGTCCACCTAACCATTTGTTTTGTTC
TTCACATTTATTTCCGTGTGCTCGATGGGCTCCTTGTCACGAGGACATCT
TGCAAGGGAGTACATACTGAACCGTGGTCACACAGAAGGATTCCTTTCCC
CAAAGCTCCCACTTTCCCCGTCTGCGGTGGCTTGCCTAAGATTTTTATCG
CGGGGAGAGTTCAGCCGTCCCTTTCCCTCGTCGACGGTGAGGTGGTACCT
TAGGCCTTCTCTTTGTGTCCTGCCCGCTGGCGCTGTGTGTGTGTGCGTGT
GTGTGCAATCTGCAGAGAAACGGGCGAGCAAGTCACACCAGGAGCTCTTC
GAGATCTGTCCTCTGGAGCAGGCCCACCTGCTCTCTCAACAGGACACCGC
GGCCTTGGCAGAGGGCTCCGACACCAAGGTGTGCGCCGCTCCTCAACTGC
ATGCTGCTGCTGTCCTTGCAAAGTTTCTTCGCACAACCGAGAGTCTCAAC
GTATGGGTAGAGCAGCGTTTTATGCAGCTGCGCGTCATCGGTCGTTGATT
AGGAGCGACAATGGCGTCACTCTGTAAATCTTCTGAGCATCATCAGCACA
AGTCCGTCCATACGTGTGTACGTTCTTGAGTTAAAACTATATCCTCGTCA
GCTCCGTTGGTTGTCCCCGTCCTCCCACCCCTACCCTCACAGAACGCCTC
CTCGAAACTCCTCCCTGAACGTCCCCCCTAAATTTGATTGTCTATAGCCT
TCTTTCGTTGTATGTAAGCAATATCGACTTCTGGTCCTTATATGTATGTA
CCCTCATAGAAACCCTAAACCCCTGCGATCTTCTCCACTTTTCAATTTCC
CTTGCCCTTCCCCCGCCCCCGCACTGCTGCTGCTGCTGCTCCTGCTGTTG
CTGCTTGCTCCTGCTCCTGCTGCTGCTTTGCTGCTGCTTCTGCCGCTGTG
TGTACGTATACAGTCTTTGGTGTACGGCGAGATCGACTTTTGGTCCTTCT
ACGACGTCATAAAGGTCGCCGCCGATGGACTGGGCACCACCGTCACCTCC
AGTCGCCACCACGGCCAAGATCAGGACGATGCGACCTTAAACTCCTCATC
TGCAGATGGGGAAGACGAGGAGGAGGAGGAGAAGCAGGAGCAGGGGCAAT
ATACACCGGAGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10960:1772..4285+

>mRNA_L-elsbetiae_contig10960.863.1 ID=mRNA_L-elsbetiae_contig10960.863.1|Name=mRNA_L-elsbetiae_contig10960.863.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig10960:1772..4285+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTGCGATGGGGATGCTGAAGCGCGGTCCAGGCGGAGGGCTGTAGC
AAGCCTGCTCGTCTTTGCCAAGGAGCTCGAGAAGGCTGGGAGGATCTCCA
AGGCGAGCAAGGGGCTCCTGAAAGATGCGTTGCGATGGGGATGCTGAAGC
GCGGTCCAGGCGGAGGGCTGTAGCAAGCCTGCTCGTCTTTGCCAAGGAGC
TCGAGAAGGCTGGGAGGATCTCCAAGGCGAGCAAGGGGCTCCTGAAAGAG
CTGATCGTCCACGAGAACCTCGAAGTGATGTCGGTCGGAGAGGCTCTAGC
GAGGGCCGAGATCGGTCAGCGGCAAGGCCTTCCCCTGCAGATCCTCGACG
AGCAGATTAAGCTGATCGTCCACGAGAACCTCGAAGTGATGTCGGTCGGA
GAGGCTCTAGCGAGGGCCGAGATCGGTCAGCGGCAAGGCCTTCCCCTGCA
GATCCTCGACGAGCAGATTAAGAAACGGGCGAGCAAGTCACACCAGGAGC
TCTTCGAGATCTGTCCTCTGGAGCAGGCCCACCTGCTCTCTCAACAGGAC
ACCGCGGCCTTGGCAGAGGGCTCCGACACCAAGAGAAACGGGCGAGCAAG
TCACACCAGGAGCTCTTCGAGATCTGTCCTCTGGAGCAGGCCCACCTGCT
CTCTCAACAGGACACCGCGGCCTTGGCAGAGGGCTCCGACACCAAGTCTT
TGGTGTACGGCGAGATCGACTTTTGGTCCTTCTACGACGTCATAAAGGTC
GCCGCCGATGGACTGGGCACCACCGTCACCTCCAGTCGCCACCACGGCCA
AGATCAGGACGATGCGACCTTAAACTCCTCATCTGCAGATGGGGAAGACG
AGGAGGAGGAGGAGAAGCAGGAGCAGGGGCAATATACACCGGAGGGATCT
TTGGTGTACGGCGAGATCGACTTTTGGTCCTTCTACGACGTCATAAAGGT
CGCCGCCGATGGACTGGGCACCACCGTCACCTCCAGTCGCCACCACGGCC
AAGATCAGGACGATGCGACCTTAAACTCCTCATCTGCAGATGGGGAAGAC
GAGGAGGAGGAGGAGAAGCAGGAGCAGGGGCAATATACACCGGAGGGA
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