mRNA_L-elsbetiae_contig10952.858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10952.858.1
Unique NamemRNA_L-elsbetiae_contig10952.858.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10952.858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10952contigL-elsbetiae_contig10952:1594..2713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1093
Cds size861
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10952.858.1prot_L-elsbetiae_contig10952.858.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10952 1825..2713 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.3241136-UTR-L-elsbetiae_contig10952:1593..18241622815312.3241136-UTR-L-elsbetiae_contig10952:1593..1824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 1594..1824 +
1691682831.4535933-UTR-L-elsbetiae_contig10952:1593..18241691682831.4535933-UTR-L-elsbetiae_contig10952:1593..1824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10952 1594..1824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.3344243-CDS-L-elsbetiae_contig10952:1824..25251622815312.3344243-CDS-L-elsbetiae_contig10952:1824..2525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 1825..2525 +
1691682831.4650497-CDS-L-elsbetiae_contig10952:1824..25251691682831.4650497-CDS-L-elsbetiae_contig10952:1824..2525Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 1825..2525 +
1622815312.344823-CDS-L-elsbetiae_contig10952:2553..27131622815312.344823-CDS-L-elsbetiae_contig10952:2553..2713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 2554..2713 +
1691682831.4764907-CDS-L-elsbetiae_contig10952:2553..27131691682831.4764907-CDS-L-elsbetiae_contig10952:2553..2713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10952 2554..2713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10952.858.1

>prot_L-elsbetiae_contig10952.858.1 ID=prot_L-elsbetiae_contig10952.858.1|Name=mRNA_L-elsbetiae_contig10952.858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
MDALHDRPKAAVGESTTKESSKGLAWWRPRRSNLADLSNTSSASTSIIST
SSPPQRPHHHRHGLVEASPSSANRLLFDDPATEGERGAAGLPTRPFETQQ
KPPRADGKQQLWTRGSREGTAAPSPEEERDDHNDANTDTDKTATAGAPPL
LLPAYSSSSSAARRRRPQGGDLLGSSSSGKLKSLKLAPPTGYSASSAATT
DRSPGTPVTSVGSSDASEGTWTESLGRAKGRRFDSSSSSSSKDGGRRNTA
AAARPRRSHRAPGRLEKTKSGSTPTAARRRRSTAVEQ
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mRNA from alignment at L-elsbetiae_contig10952:1594..2713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10952.858.1 ID=mRNA_L-elsbetiae_contig10952.858.1|Name=mRNA_L-elsbetiae_contig10952.858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1120bp|location=Sequence derived from alignment at L-elsbetiae_contig10952:1594..2713+ (Laminarionema elsbetiae ELsaHSoW15)
TCACGGTGAGTTTTGTTTTTTTTACAAGGTTTGTGCCCTCTTGCTCGACA
CGAGCAACAACAGGCAACGGTAGGCCACGCGCTGAGTGCTGCAACAGCCG
TACCCCAACCAAATATCGGCAGTTCATCTCGTTGCACTTGATTCTCGGTC
CCGGTAGGTGAGACGTTCGTTTGTCGCATCTGCCGTTGGCCGGCCGTTAG
GAAAAGAGTTGTCTGTAGCGCGGGCCGGAACATGGATGCTCTCCACGATC
GCCCGAAAGCCGCGGTAGGCGAATCGACGACGAAAGAATCCAGCAAGGGC
CTTGCATGGTGGAGGCCAAGGCGCTCTAACCTCGCCGACCTCTCCAACAC
CAGCTCCGCAAGCACGAGCATCATCAGCACCAGCTCCCCGCCCCAACGGC
CGCACCACCACCGGCACGGGCTTGTAGAAGCCTCGCCGTCGTCGGCCAAC
CGGCTGCTGTTCGACGATCCAGCAACAGAGGGGGAAAGAGGAGCAGCAGG
GCTGCCGACACGACCTTTCGAGACGCAGCAGAAGCCGCCACGGGCCGACG
GAAAGCAGCAGCTCTGGACGCGAGGCAGCCGCGAGGGGACCGCGGCGCCG
TCCCCCGAGGAGGAGAGGGACGATCACAACGACGCCAACACCGACACCGA
CAAAACCGCCACCGCCGGCGCGCCGCCGTTGCTCTTGCCGGCGTACAGCA
GCAGCTCCTCCGCCGCGCGCCGGCGGCGGCCGCAGGGAGGAGACCTCCTG
GGGTCCTCCTCGTCGGGCAAGTTAAAGTCCCTCAAGCTGGCTCCTCCGAC
AGGTTATTCTGCGAGTTCCGCCGCCACCACCGACCGTTCGCCCGGGACAC
CGGTAACCAGTGTCGGCAGCAGTGACGCCAGTGAGGGTACGTGGACGGAA
TCCCTGGGCCGCGCAAAAGGCCGCCGGTTTGAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGATGGCGGTCGGAGG
AACACGGCGGCCGCCGCACGCCCACGACGAAGCCACCGCGCCCCGGGGCG
GCTGGAAAAAACGAAATCGGGGTCGACACCAACCGCAGCACGGCGGCGCC
GCAGCACGGCGGTAGAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10952:1594..2713+

>mRNA_L-elsbetiae_contig10952.858.1 ID=mRNA_L-elsbetiae_contig10952.858.1|Name=mRNA_L-elsbetiae_contig10952.858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig10952:1594..2713+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGCTCTCCACGATCGCCCGAAAGCCGCGGTAGGCGAATCGACGAC
GAAAGAATCCAGCAAGGGCCTTGCATGGTGGAGGCCAAGGCGCTCTAACC
TCGCCGACCTCTCCAACACCAGCTCCGCAAGCACGAGCATCATCAGCACC
AGCTCCCCGCCCCAACGGCCGCACCACCACCGGCACGGGCTTGTAGAAGC
CTCGCCGTCGTCGGCCAACCGGCTGCTGTTCGACGATCCAGCAACAGAGG
GGGAAAGAGGAGCAGCAGGGCTGCCGACACGACCTTTCGAGACGCAGCAG
AAGCCGCCACGGGCCGACGGAAAGCAGCAGCTCTGGACGCGAGGCAGCCG
CGAGGGGACCGCGGCGCCGTCCCCCGAGGAGGAGAGGGACGATCACAACG
ACGCCAACACCGACACCGACAAAACCGCCACCGCCGGCGCGCCGCCGTTG
CTCTTGCCGGCGTACAGCAGCAGCTCCTCCGCCGCGCGCCGGCGGCGGCC
GCAGGGAGGAGACCTCCTGGGGTCCTCCTCGTCGGGCAAGTTAAAGTCCC
TCAAGCTGGCTCCTCCGACAGGTTATTCTGCGAGTTCCGCCGCCACCACC
GACCGTTCGCCCGGGACACCGGTAACCAGTGTCGGCAGCAGTGACGCCAG
TGAGGGTACGTGGACGGAATCCCTGGGCCGCGCAAAAGGCCGCCGGTTTG
AATGGATGCTCTCCACGATCGCCCGAAAGCCGCGGTAGGCGAATCGACGA
CGAAAGAATCCAGCAAGGGCCTTGCATGGTGGAGGCCAAGGCGCTCTAAC
CTCGCCGACCTCTCCAACACCAGCTCCGCAAGCACGAGCATCATCAGCAC
CAGCTCCCCGCCCCAACGGCCGCACCACCACCGGCACGGGCTTGTAGAAG
CCTCGCCGTCGTCGGCCAACCGGCTGCTGTTCGACGATCCAGCAACAGAG
GGGGAAAGAGGAGCAGCAGGGCTGCCGACACGACCTTTCGAGACGCAGCA
GAAGCCGCCACGGGCCGACGGAAAGCAGCAGCTCTGGACGCGAGGCAGCC
GCGAGGGGACCGCGGCGCCGTCCCCCGAGGAGGAGAGGGACGATCACAAC
GACGCCAACACCGACACCGACAAAACCGCCACCGCCGGCGCGCCGCCGTT
GCTCTTGCCGGCGTACAGCAGCAGCTCCTCCGCCGCGCGCCGGCGGCGGC
CGCAGGGAGGAGACCTCCTGGGGTCCTCCTCGTCGGGCAAGTTAAAGTCC
CTCAAGCTGGCTCCTCCGACAGGTTATTCTGCGAGTTCCGCCGCCACCAC
CGACCGTTCGCCCGGGACACCGGTAACCAGTGTCGGCAGCAGTGACGCCA
GTGAGGGTACGTGGACGGAATCCCTGGGCCGCGCAAAAGGCCGCCGGTTT
GACAGCAGCAGCAGCAGCAGCAGCAAAGATGGCGGTCGGAGGAACACGGC
GGCCGCCGCACGCCCACGACGAAGCCACCGCGCCCCGGGGCGGCTGGAAA
AAACGAAATCGGGGTCGACACCAACCGCAGCACGGCGGCGCCGCAGCACG
GCGGTAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGATGGCGGTCGGA
GGAACACGGCGGCCGCCGCACGCCCACGACGAAGCCACCGCGCCCCGGGG
CGGCTGGAAAAAACGAAATCGGGGTCGACACCAACCGCAGCACGGCGGCG
CCGCAGCACGGCGGTAGAGCAG
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