mRNA_L-elsbetiae_contig1095.856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1095.856.1
Unique NamemRNA_L-elsbetiae_contig1095.856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1095.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1095contigL-elsbetiae_contig1095:17718..18316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size599
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1095.856.1prot_L-elsbetiae_contig1095.856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1095 17739..18071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.0889754-UTR-L-elsbetiae_contig1095:17717..177381622815312.0889754-UTR-L-elsbetiae_contig1095:17717..17738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1095 17718..17738 +
1691682831.3413143-UTR-L-elsbetiae_contig1095:17717..177381691682831.3413143-UTR-L-elsbetiae_contig1095:17717..17738Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1095 17718..17738 +
1622815312.1134012-UTR-L-elsbetiae_contig1095:18071..183161622815312.1134012-UTR-L-elsbetiae_contig1095:18071..18316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1095 18072..18316 +
1691682831.3609285-UTR-L-elsbetiae_contig1095:18071..183161691682831.3609285-UTR-L-elsbetiae_contig1095:18071..18316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1095 18072..18316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.0995996-CDS-L-elsbetiae_contig1095:17738..180711622815312.0995996-CDS-L-elsbetiae_contig1095:17738..18071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1095 17739..18071 +
1691682831.3513048-CDS-L-elsbetiae_contig1095:17738..180711691682831.3513048-CDS-L-elsbetiae_contig1095:17738..18071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1095 17739..18071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1095.856.1

>prot_L-elsbetiae_contig1095.856.1 ID=prot_L-elsbetiae_contig1095.856.1|Name=mRNA_L-elsbetiae_contig1095.856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MGGFLLICVCLVELELSERCQSNAEVFRSGLVTFLWDGMPIECRGVSLGI
GSIFWGWDGMGMEWNGCIFRLHRRESTGAKRRGGELSPLPTHRPRPLPSI
KCDTEGLRLP*
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mRNA from alignment at L-elsbetiae_contig1095:17718..18316+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1095.856.1 ID=mRNA_L-elsbetiae_contig1095.856.1|Name=mRNA_L-elsbetiae_contig1095.856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=599bp|location=Sequence derived from alignment at L-elsbetiae_contig1095:17718..18316+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGGTTTTGCAGGCTTCTCTATGGGTGGTTTCCTGCTGATTTGTGTGTG
TCTTGTCGAGCTTGAGCTGAGTGAGCGATGTCAATCGAATGCCGAGGTGT
TTCGTTCGGGATTGGTTACATTTTTATGGGATGGGATGCCAATCGAATGC
CGAGGTGTTTCGTTGGGGATTGGTTCTATTTTTTGGGGGTGGGATGGTAT
GGGAATGGAATGGAATGGCTGTATTTTCCGCCTCCATAGAAGAGAATCGA
CGGGGGCAAAGCGAAGGGGAGGGGAGCTTTCCCCCCTGCCCACCCACCGC
CCCCGTCCTCTACCGTCAATCAAGTGCGATACAGAGGGTTTACGCTTGCC
TTAGTGGATCTGCGTGTGTGTTTCTCAGCGATTGTTAACTGTTTTCTCTT
CACTGCTGTGAGTGGTTCACAGCAAGGTACTTTATATTGGACGTGGTTGG
CTGGGATCAGGTGTCTATTAAGTTGGTGCTGCCCTTGCGTTTCGTGCTAA
GCGTTGGGCGGCTCGGTCCATTTTTTCGATTTGGTTGGATTGGTGTGGTA
TTTGTTGGCTGGTAATTGTGTATCTCGTGAGTGGTCCTTTGTTGCTTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1095:17718..18316+

>mRNA_L-elsbetiae_contig1095.856.1 ID=mRNA_L-elsbetiae_contig1095.856.1|Name=mRNA_L-elsbetiae_contig1095.856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig1095:17718..18316+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGGTTTCCTGCTGATTTGTGTGTGTCTTGTCGAGCTTGAGCTGAG
TGAGCGATGTCAATCGAATGCCGAGGTGTTTCGTTCGGGATTGGTTACAT
TTTTATGGGATGGGATGCCAATCGAATGCCGAGGTGTTTCGTTGGGGATT
GGTTCTATTTTTTGGGGGTGGGATGGTATGGGAATGGAATGGAATGGCTG
TATTTTCCGCCTCCATAGAAGAGAATCGACGGGGGCAAAGCGAAGGGGAG
GGGAGCTTTCCCCCCTGCCCACCCACCGCCCCCGTCCTCTACCGTCAATC
AAGTGCGATACAGAGGGTTTACGCTTGCCTTAGATGGGTGGTTTCCTGCT
GATTTGTGTGTGTCTTGTCGAGCTTGAGCTGAGTGAGCGATGTCAATCGA
ATGCCGAGGTGTTTCGTTCGGGATTGGTTACATTTTTATGGGATGGGATG
CCAATCGAATGCCGAGGTGTTTCGTTGGGGATTGGTTCTATTTTTTGGGG
GTGGGATGGTATGGGAATGGAATGGAATGGCTGTATTTTCCGCCTCCATA
GAAGAGAATCGACGGGGGCAAAGCGAAGGGGAGGGGAGCTTTCCCCCCTG
CCCACCCACCGCCCCCGTCCTCTACCGTCAATCAAGTGCGATACAGAGGG
TTTACGCTTGCCTTAG
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