mRNA_L-elsbetiae_contig10946.851.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10946.851.1
Unique NamemRNA_L-elsbetiae_contig10946.851.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10946.851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10946contigL-elsbetiae_contig10946:1669..2483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.814891-CDS-L-elsbetiae_contig10946:1668..19031622815311.814891-CDS-L-elsbetiae_contig10946:1668..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 1669..1903 +
1691682831.156444-CDS-L-elsbetiae_contig10946:1668..19031691682831.156444-CDS-L-elsbetiae_contig10946:1668..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 1669..1903 +
1622815311.8276532-CDS-L-elsbetiae_contig10946:2439..24831622815311.8276532-CDS-L-elsbetiae_contig10946:2439..2483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 2440..2483 +
1691682831.1722763-CDS-L-elsbetiae_contig10946:2439..24831691682831.1722763-CDS-L-elsbetiae_contig10946:2439..2483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10946 2440..2483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10946.851.1prot_L-elsbetiae_contig10946.851.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10946 1669..2483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10946.851.1

>prot_L-elsbetiae_contig10946.851.1 ID=prot_L-elsbetiae_contig10946.851.1|Name=mRNA_L-elsbetiae_contig10946.851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
VPVRISFIKPELEASRSVECVQVCSWSVQDLPSDGLIHLTTQSGNVQDRG
QYAFRMKAGHQLAAEIVPNPELGALADQDLPSTPSRWRYQVDN
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mRNA from alignment at L-elsbetiae_contig10946:1669..2483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10946.851.1 ID=mRNA_L-elsbetiae_contig10946.851.1|Name=mRNA_L-elsbetiae_contig10946.851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=815bp|location=Sequence derived from alignment at L-elsbetiae_contig10946:1669..2483+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCAGTTAGGATTAGCTTCATCAAACCAGAGCTTGAAGCCTCCCGATC
GGTCGAGTGCGTACAGGTTTGCTCTTGGTCAGTCCAGGACCTGCCGTCAG
ATGGTCTTATACACTTGACCACTCAGTCAGGCAACGTACAGGACCGAGGG
CAGTACGCCTTCCGTATGAAGGCAGGGCATCAGCTCGCAGCCGAGATCGT
GCCAAACCCGGAGCTTGGTGCTTTAGCTGACCAAGGTAAGGGTGCGATTT
CATCTTTTCTAGTCAGCACTCCACACCGCTCAAGGACACGCAGATATACA
TACAAGGTCTTTTTTGTTTTACAAATCCCTCGCCCGAGGAGTGCCCTTGA
GTTTCAGGGGGCTGGATATACTGGATATAGTATATGTATGTATATATCAT
TCGGGGCACCATGTTCTTCAATAGTGTGTCCTTCAAGCGGGGATCGATTG
CATTGTCTCGCTTGATGAGAAAAACTCTGGGGAGATAGATCAAGTCAAAA
CACCCCCTTTTATCATTGTGAGCCGCTTGATGAAGGAGCTCATTCCAAAA
AATATCTCAACACCGGGTGGGATCAACTACCGCTCAGTGAGCCAAAGCGC
ACCTGTTGGACGACGTTGCTTGTCTTGCTCGAATAAGAGATGGCGAGAGA
GCTGCTTCCCTCAATTATTTTGGCACGCATGCATGCGCATATCAATTGGC
TATTAATAGGCCGCAGAATCGTTTCACAGTGTGCTGAGTAGAGCCCTTTT
CCCTCTATTCCATATGTTCAGATCTACCAAGCACTCCTAGCCGCTGGCGG
TACCAAGTCGACAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10946:1669..2483+

>mRNA_L-elsbetiae_contig10946.851.1 ID=mRNA_L-elsbetiae_contig10946.851.1|Name=mRNA_L-elsbetiae_contig10946.851.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig10946:1669..2483+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCAGTTAGGATTAGCTTCATCAAACCAGAGCTTGAAGCCTCCCGATC
GGTCGAGTGCGTACAGGTTTGCTCTTGGTCAGTCCAGGACCTGCCGTCAG
ATGGTCTTATACACTTGACCACTCAGTCAGGCAACGTACAGGACCGAGGG
CAGTACGCCTTCCGTATGAAGGCAGGGCATCAGCTCGCAGCCGAGATCGT
GCCAAACCCGGAGCTTGGTGCTTTAGCTGACCAAGGTGCCAGTTAGGATT
AGCTTCATCAAACCAGAGCTTGAAGCCTCCCGATCGGTCGAGTGCGTACA
GGTTTGCTCTTGGTCAGTCCAGGACCTGCCGTCAGATGGTCTTATACACT
TGACCACTCAGTCAGGCAACGTACAGGACCGAGGGCAGTACGCCTTCCGT
ATGAAGGCAGGGCATCAGCTCGCAGCCGAGATCGTGCCAAACCCGGAGCT
TGGTGCTTTAGCTGACCAAGATCTACCAAGCACTCCTAGCCGCTGGCGGT
ACCAAGTCGACAACATCTACCAAGCACTCCTAGCCGCTGGCGGTACCAAG
TCGACAAC
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