mRNA_L-elsbetiae_contig1092.836.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1092.836.1
Unique NamemRNA_L-elsbetiae_contig1092.836.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1092.836.1 vs. uniprot
Match: A0A6H5JGE4_9PHAE (Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGE4_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.120e-45
Identity = 153/291 (52.58%), Postives = 169/291 (58.08%), Query Frame = 3 
Query:    9 PSGGRSPLGPRSAQGPPLDHRRNHPHHPPQL----HVSALDLGDPALMNIGGGMLDTPVR---GVAAPAGGGAGSGGGSDWLAVQQAFGSPSSALHMPPAVVVPVSPPDAPAATGRPGSAADSPIPKLPPRPASVSATQSGSAVAA------AGPDCSNGXXXXR--------RDAAG--------ICRLFESERATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLTEELGKMQRQIEAMLERQSRSLEGRMGETEQMISARLALLETKVQGLEISSPLHT 794
            P  GRSPLGPRSAQGPP +                HV A+DLGD A M    GML TP R      +PAG        SDWLAVQQAFGSPSSALHMPPAVVVP SPPDAPA +GR    AD+P+PKLPPRP+S S+    +AV+A      A  D  +     R        RD  G                   XXXXXXXXXXXXXXXX                     SL EELGKM++QIEAMLER S++LEGRMGETEQMISARLA+LETKV GLEI SPLHT
Sbjct:  427 PEQGRSPLGPRSAQGPPHEXXXXXXXXXXXXXXXXHVPAIDLGDAAPM----GMLPTPARVGSSPGSPAGXXXXXXXXSDWLAVQQAFGSPSSALHMPPAVVVPTSPPDAPA-SGRGVVVADTPMPKLPPRPSSASSIGEAAAVSAVVDAGTAKVDSGSSSSSSRVMSPVGSGRDEEGRADKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGGTSAAFGKDKDSGEDDDRSLAEELGKMRQQIEAMLERHSKTLEGRMGETEQMISARLAMLETKVHGLEIGSPLHT 712
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1092.836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGE4_9PHAE4.120e-4552.58Centrosomal protein of 44 kDa n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1092contigL-elsbetiae_contig1092:5005..5895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_007220.2
Exons1
Model size891
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1092.836.1prot_L-elsbetiae_contig1092.836.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1092 5142..5801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.3352013-UTR-L-elsbetiae_contig1092:5004..51411622815310.3352013-UTR-L-elsbetiae_contig1092:5004..5141Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1092 5005..5141 +
1691682830.316437-UTR-L-elsbetiae_contig1092:5004..51411691682830.316437-UTR-L-elsbetiae_contig1092:5004..5141Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1092 5005..5141 +
1622815310.3708618-UTR-L-elsbetiae_contig1092:5801..58951622815310.3708618-UTR-L-elsbetiae_contig1092:5801..5895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1092 5802..5895 +
1691682830.3355212-UTR-L-elsbetiae_contig1092:5801..58951691682830.3355212-UTR-L-elsbetiae_contig1092:5801..5895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1092 5802..5895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.3536744-CDS-L-elsbetiae_contig1092:5141..58011622815310.3536744-CDS-L-elsbetiae_contig1092:5141..5801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1092 5142..5801 +
1691682830.3263693-CDS-L-elsbetiae_contig1092:5141..58011691682830.3263693-CDS-L-elsbetiae_contig1092:5141..5801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1092 5142..5801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1092.836.1

>prot_L-elsbetiae_contig1092.836.1 ID=prot_L-elsbetiae_contig1092.836.1|Name=mRNA_L-elsbetiae_contig1092.836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MNIGGGMLDTPVRGVAAPAGGGAGSGGGSDWLAVQQAFGSPSSALHMPPA
VVVPVSPPDAPAATGRPGSAADSPIPKLPPRPASVSATQSGSAVAAAGPD
CSNGGGGSRRDAAGICRLFESERATEQQQHAGTGGGGDTQQQQRRPGRGG
SGDGGGDEDDDSSLTEELGKMQRQIEAMLERQSRSLEGRMGETEQMISAR
LALLETKVQGLEISSPLHT*
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mRNA from alignment at L-elsbetiae_contig1092:5005..5895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1092.836.1 ID=mRNA_L-elsbetiae_contig1092.836.1|Name=mRNA_L-elsbetiae_contig1092.836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=891bp|location=Sequence derived from alignment at L-elsbetiae_contig1092:5005..5895+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGCGACCCTCGGGGGGGCGGTCTCCGCTTGGACCGCGCTCGGCGCAG
GGCCCGCCGCTCGATCACCGGCGCAACCACCCCCACCACCCCCCGCAGCT
CCACGTGTCGGCCCTGGATCTGGGGGACCCGGCCCTGATGAACATCGGTG
GTGGCATGCTCGATACCCCCGTGCGGGGTGTTGCCGCGCCGGCGGGGGGG
GGCGCGGGGAGCGGCGGGGGATCGGACTGGCTCGCGGTTCAGCAGGCGTT
CGGGTCGCCGTCCAGCGCTCTGCATATGCCCCCGGCGGTTGTGGTGCCGG
TAAGCCCCCCGGACGCCCCCGCGGCGACCGGGCGGCCGGGTTCGGCCGCA
GACTCGCCCATCCCGAAGCTCCCTCCGCGTCCGGCCTCCGTCTCGGCTAC
TCAGTCGGGCTCCGCAGTCGCCGCCGCCGGTCCTGATTGTTCTAACGGCG
GGGGCGGTAGCAGAAGGGATGCCGCCGGCATCTGCCGCCTTTTCGAGAGT
GAGAGAGCAACGGAGCAGCAGCAGCACGCCGGCACCGGCGGCGGTGGCGA
CACGCAGCAGCAGCAGCGGCGGCCCGGCCGCGGCGGCAGCGGCGACGGAG
GTGGCGACGAAGATGACGACAGCTCCCTCACGGAGGAGCTGGGGAAGATG
CAGCGGCAGATAGAGGCTATGCTGGAGAGGCAATCGCGGTCGCTGGAGGG
AAGGATGGGCGAGACAGAGCAGATGATATCCGCGCGGCTAGCCCTGCTGG
AGACAAAGGTTCAAGGGTTGGAGATCAGCTCCCCTCTCCACACGTAATAT
CAACGCTAGACCCGCCCTCGTTGGCTGAGAGGGCGCGGGGGGCGACGAAG
ACTTGCGGGGTCTCCTTGCAGATGCACTCCCATATTCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1092:5005..5895+

>mRNA_L-elsbetiae_contig1092.836.1 ID=mRNA_L-elsbetiae_contig1092.836.1|Name=mRNA_L-elsbetiae_contig1092.836.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig1092:5005..5895+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACATCGGTGGTGGCATGCTCGATACCCCCGTGCGGGGTGTTGCCGC
GCCGGCGGGGGGGGGCGCGGGGAGCGGCGGGGGATCGGACTGGCTCGCGG
TTCAGCAGGCGTTCGGGTCGCCGTCCAGCGCTCTGCATATGCCCCCGGCG
GTTGTGGTGCCGGTAAGCCCCCCGGACGCCCCCGCGGCGACCGGGCGGCC
GGGTTCGGCCGCAGACTCGCCCATCCCGAAGCTCCCTCCGCGTCCGGCCT
CCGTCTCGGCTACTCAGTCGGGCTCCGCAGTCGCCGCCGCCGGTCCTGAT
TGTTCTAACGGCGGGGGCGGTAGCAGAAGGGATGCCGCCGGCATCTGCCG
CCTTTTCGAGAGTGAGAGAGCAACGGAGCAGCAGCAGCACGCCGGCACCG
GCGGCGGTGGCGACACGCAGCAGCAGCAGCGGCGGCCCGGCCGCGGCGGC
AGCGGCGACGGAGGTGGCGACGAAGATGACGACAGCTCCCTCACGGAGGA
GCTGGGGAAGATGCAGCGGCAGATAGAGGCTATGCTGGAGAGGCAATCGC
GGTCGCTGGAGGGAAGGATGGGCGAGACAGAGCAGATGATATCCGCGCGG
CTAGCCCTGCTGGAGACAAAGGTTCAAGGGTTGGAGATCAGCTCCCCTCT
CCACACGTAAATGAACATCGGTGGTGGCATGCTCGATACCCCCGTGCGGG
GTGTTGCCGCGCCGGCGGGGGGGGGCGCGGGGAGCGGCGGGGGATCGGAC
TGGCTCGCGGTTCAGCAGGCGTTCGGGTCGCCGTCCAGCGCTCTGCATAT
GCCCCCGGCGGTTGTGGTGCCGGTAAGCCCCCCGGACGCCCCCGCGGCGA
CCGGGCGGCCGGGTTCGGCCGCAGACTCGCCCATCCCGAAGCTCCCTCCG
CGTCCGGCCTCCGTCTCGGCTACTCAGTCGGGCTCCGCAGTCGCCGCCGC
CGGTCCTGATTGTTCTAACGGCGGGGGCGGTAGCAGAAGGGATGCCGCCG
GCATCTGCCGCCTTTTCGAGAGTGAGAGAGCAACGGAGCAGCAGCAGCAC
GCCGGCACCGGCGGCGGTGGCGACACGCAGCAGCAGCAGCGGCGGCCCGG
CCGCGGCGGCAGCGGCGACGGAGGTGGCGACGAAGATGACGACAGCTCCC
TCACGGAGGAGCTGGGGAAGATGCAGCGGCAGATAGAGGCTATGCTGGAG
AGGCAATCGCGGTCGCTGGAGGGAAGGATGGGCGAGACAGAGCAGATGAT
ATCCGCGCGGCTAGCCCTGCTGGAGACAAAGGTTCAAGGGTTGGAGATCA
GCTCCCCTCTCCACACGTAA
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