mRNA_L-elsbetiae_contig10919.834.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10919.834.1
Unique NamemRNA_L-elsbetiae_contig10919.834.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5K2B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B3_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.370e-49
Identity = 108/224 (48.21%), Postives = 126/224 (56.25%), Query Frame = 2
Query:   47 MPLPLETLKGISKLVKLKGGGLILERHYEVLKKHVEDGNRQTEEH*ESID------------------------------------------------------------TMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGNSVRAVL 538
            M LPL TLK + KL  LK  G+ILER YEV+KKHV +GN  + E  E+ D                                                            +M+ D+EI AM+IPDGF +QAS P+ LDSSLL+RG+LVRLGMGW GG+ITRQSQERTRH YDYRVHL+ DQSTRS KLPLE Y  DP+AV  SW+LLE  T EQVDG    A L
Sbjct:    1 MSLPLATLKELQKLAALKAKGVILERQYEVIKKHVREGNSLSSEDWEAFDLARDLRSSGVLSEEEWTTQTVEGEGDHSGEGVEDGDSSDEDTRETASGQMDELRLVDDDDSMESDNEIHAMEIPDGFRIQASTPAALDSSLLQRGLLVRLGMGWLGGIITRQSQERTRHLYDYRVHLDLDQSTRSMKLPLEMYR-DPDAVVDSWILLERSTVEQVDGGGAAATL 223          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.490e-45
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 2
Query:  179 H*ESIDTMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGN 520
            H +  D+M+ DDEI+AM+IPDGF +QAS P+ LD+ LL+RG+LVRLGMGWFGGLITRQSQERTRH YDYRVHL+ DQSTR  KL LE Y GDP+AV GSW+LLE  T EQVDG+
Sbjct:    6 HVDDDDSMESDDEIRAMEIPDGFRIQASTPAALDNLLLQRGLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLERNTVEQVDGS 119          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 1.450e-42
Identity = 80/119 (67.23%), Postives = 91/119 (76.47%), Query Frame = 2
Query:  200 MDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGNSVRAVLLVDRGG 556
            M+ D+EI AM+IPD F +QA  P+ LD SLL+RGVLV LGMGWFGG+ITRQSQERTRH YDY +HL+ DQSTRS KLPLE Y  DP+AV GSW+LLE  T EQVDG    A L V R G
Sbjct:    1 MESDEEIHAMEIPDRFRIQACTPAALDISLLQRGVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLERSTVEQVDGGGNAASLGVSRAG 119          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5JXN2_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN2_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.150e-41
Identity = 80/108 (74.07%), Postives = 95/108 (87.96%), Query Frame = 2
Query:  197 TMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGN 520
            +M+ DDEI+AM+IPDGF +QAS P+ LD+SLL+RG+LVRLGMGWFGG+ITRQSQERTRH YDYRVHL+ D+STRS KLPLE Y GDP+AV GSW+LLE  T EQVDG+
Sbjct:  542 SMESDDEIRAMEIPDGFRIQASTPAALDNSLLQRGLLVRLGMGWFGGVITRQSQERTRHLYDYRVHLDLDRSTRSMKLPLEMYKGDPDAVVGSWILLERNTVEQVDGS 649          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5L5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.710e-37
Identity = 73/105 (69.52%), Postives = 86/105 (81.90%), Query Frame = 2
Query:  194 DTMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQ 508
            D+M+ DDEI AM+IPDGF +QA  P+ +DSSLL+RGVLVRLGMGWFGG+ITR+SQERTRH YDYRVHL+ DQST S KLPLE Y G P+AV GSW+LL    S +
Sbjct:  256 DSMESDDEIHAMEIPDGFCIQACTPAAIDSSLLQRGVLVRLGMGWFGGVITRKSQERTRHLYDYRVHLDLDQSTSSMKLPLEMYRGVPDAVVGSWILLGRARSSR 360          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5K0X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X8_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 9.900e-35
Identity = 76/125 (60.80%), Postives = 89/125 (71.20%), Query Frame = 2
Query:  185 ESIDTMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGNSVRA-VLLVDRGG 556
            +S+D  DP+DEIQ M+IP GF +Q + P  L+  LLRRGVLVRLGMGWFGGLIT+QSQ+  RH YDY V LE  QSTR  KLPL+KYSGD +A  GSWVLLE I+     G   R  V LVD+ G
Sbjct:   65 DSMDPQDPEDEIQGMEIPAGFHIQEAKPVVLERLLLRRGVLVRLGMGWFGGLITQQSQKDIRHLYDYCVQLELHQSTRKMKLPLDKYSGDSDAAVGSWVLLESISRS---GRVRRTNVTLVDQEG 186          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5KLT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT3_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.680e-34
Identity = 73/124 (58.87%), Postives = 88/124 (70.97%), Query Frame = 2
Query:  185 ESIDTMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGNSVRAVLLVDRGG 556
            +S+D  DP+DE Q M+IP GF +Q S P+ LD  LL+RGVLVRLGMGWFGGLI +QS +R  H YDY V LE D STR+ KLPL+KYSGDP+A  GSWVLLE ++        VR   LVD+ G
Sbjct:   29 DSMDPDDPEDETQGMEIPAGFRLQESTPAALDRLLLQRGVLVRLGMGWFGGLIIQQSPQR--HLYDYCVQLEVDHSTRNVKLPLDKYSGDPDAAVGSWVLLESVSM----AGRVRTPTLVDQDG 146          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.230e-34
Identity = 75/125 (60.00%), Postives = 88/125 (70.40%), Query Frame = 2
Query:  185 ESIDTMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGNSVRA-VLLVDRGG 556
            +S D  +P+DEIQ M+IP GF +Q + P  L   LLRRGVLVRLGMGWFGGLIT+Q Q+ TRH YDY V LE DQSTR  KLPL+KYSGD +A  GSWVLLE ++     G   R  V LVD+ G
Sbjct:   23 DSTDPQNPEDEIQGMEIPAGFRIQDAKPVALGRLLLRRGVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLESVSRS---GRVRRTNVTLVDQEG 144          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5KMY4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMY4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.820e-34
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 2
Query:  185 ESIDTMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEITSEQVDGNSVRA-VLLVDRGG 556
            +S+D  DP+DEIQ M+IP GF +Q + P  LD  LLRRGVLVRLGMG FGGLIT+QSQ+ TRH YD  V LE DQSTR  KLPL+KYSGD +A  GSWVLLE I+     G   R  V L+D+GG
Sbjct:  110 DSMDPQDPEDEIQGMEIPAGFRIQKATPVALDRLLLRRGVLVRLGMGGFGGLITQQSQKDTRHLYDCCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLESISRS---GRVRRTNVTLMDQGG 231          
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Match: A0A6H5JB97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB97_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.190e-33
Identity = 66/105 (62.86%), Postives = 79/105 (75.24%), Query Frame = 2
Query:  185 ESIDTMDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITRQSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEIT 499
            +S+D  DP+DE Q M+IP GF +Q   P  LD  L RRGVLVRLGMGWFGGLI +QSQ+ TRH YDY V LE DQSTR  KL L++Y+GDP+A  GSWVLLE ++
Sbjct:   22 DSMDPQDPEDETQGMEIPTGFRIQEVKPVALDRLLFRRGVLVRLGMGWFGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLLLDEYTGDPDAAVGSWVLLESVS 126          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10919.834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2B3_9PHAE1.370e-4948.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHL7_9PHAE1.490e-4571.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW4_9PHAE1.450e-4267.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN2_9PHAE2.150e-4174.07C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L5J8_9PHAE3.710e-3769.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0X8_9PHAE9.900e-3560.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT3_9PHAE1.680e-3458.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE2.230e-3460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMY4_9PHAE4.820e-3461.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB97_9PHAE1.190e-3362.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10919contigL-elsbetiae_contig10919:4639..5653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue9.8e-27
Seed eggNOG ortholog2880.D7FI08
Hectar predicted targeting categoryother localisation
EggNOG OGs2DCSR@1,2S5KN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1015
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10919.834.1prot_L-elsbetiae_contig10919.834.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10919 4838..5212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.2733958-UTR-L-elsbetiae_contig10919:4638..48371622815310.2733958-UTR-L-elsbetiae_contig10919:4638..4837Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10919 4639..4837 +
1691682830.289733-UTR-L-elsbetiae_contig10919:4638..48371691682830.289733-UTR-L-elsbetiae_contig10919:4638..4837Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10919 4639..4837 +
1622815310.2972455-UTR-L-elsbetiae_contig10919:5212..56531622815310.2972455-UTR-L-elsbetiae_contig10919:5212..5653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10919 5213..5653 +
1691682830.3084471-UTR-L-elsbetiae_contig10919:5212..56531691682830.3084471-UTR-L-elsbetiae_contig10919:5212..5653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10919 5213..5653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.2860432-CDS-L-elsbetiae_contig10919:4837..52121622815310.2860432-CDS-L-elsbetiae_contig10919:4837..5212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10919 4838..5212 +
1691682830.2994127-CDS-L-elsbetiae_contig10919:4837..52121691682830.2994127-CDS-L-elsbetiae_contig10919:4837..5212Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10919 4838..5212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10919.834.1

>prot_L-elsbetiae_contig10919.834.1 ID=prot_L-elsbetiae_contig10919.834.1|Name=mRNA_L-elsbetiae_contig10919.834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MDPDDEIQAMKIPDGFFVQASPPSDLDSSLLRRGVLVRLGMGWFGGLITR
QSQERTRHQYDYRVHLEEDQSTRSTKLPLEKYSGDPEAVKGSWVLLEEIT
SEQVDGNSVRAVLLVDRGGYRGPT*
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mRNA from alignment at L-elsbetiae_contig10919:4639..5653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10919.834.1 ID=mRNA_L-elsbetiae_contig10919.834.1|Name=mRNA_L-elsbetiae_contig10919.834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1015bp|location=Sequence derived from alignment at L-elsbetiae_contig10919:4639..5653+ (Laminarionema elsbetiae ELsaHSoW15)
GGACTGTGCGCACGGCAGGGTGCGTGCCACGAGCCAAGGGAGATAGATGC CTTTACCCCTCGAGACGTTGAAGGGGATTTCCAAACTTGTCAAATTGAAG GGTGGGGGGTTGATCCTTGAGCGACACTACGAGGTCCTCAAGAAACATGT CGAGGACGGCAACCGCCAGACAGAGGAACACTAGGAGTCCATCGACACCA TGGATCCAGACGACGAGATACAAGCCATGAAGATCCCGGACGGCTTTTTC GTTCAGGCATCTCCCCCCTCTGATCTTGACAGTTCGTTGCTGCGCCGCGG AGTGCTCGTTAGGTTGGGCATGGGGTGGTTTGGTGGGTTGATCACTCGCC AATCTCAAGAGCGTACCCGGCACCAATACGATTACCGCGTGCATCTCGAG GAAGACCAGAGTACCCGCAGCACGAAGCTACCGTTGGAAAAGTACAGTGG AGACCCGGAGGCAGTGAAAGGCTCGTGGGTTTTGCTAGAAGAGATCACAT CAGAGCAAGTGGATGGGAATTCCGTCCGGGCTGTGTTATTAGTAGATCGG GGTGGGTATCGAGGCCCAACGTAACGCTTGTGGACCAACGGGGTTGAGAG TTGTTCCATGGTACCGTGCGCTTTTTCTGCTCAAGTGTTGGTTGATGTGT GTATCGTGAAGTTTTAAGACTGGCCGCGGAGGCAGATGCATTTGAACCAC ACGGTCCTGCCGTCGTCCAGAGTCCTAGGGCAGAGGCTGCTGATGACATG TAGACATGTGATGATGACTACTTACTCTTAGTATTGTGAACGGAATACCA GCTCCAGGGTTGCCCACGTAAGTCGCTTGTTGTCGAAATAAGAACACAAG AACCCGTGCGTTAGTACAGTAGCATATTTCCTGGCCGAAAATAAGAACTT CGCAATTAAGAACCTGTGCTCGGTTTGGGCGGCCAATAAGCCGCGAGCCT CGGGCAAAATAACAGGTTCTTAAGTCTTAAGTGGTGGCGCCTACTACTGT AGAAAAGTGAAGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10919:4639..5653+

>mRNA_L-elsbetiae_contig10919.834.1 ID=mRNA_L-elsbetiae_contig10919.834.1|Name=mRNA_L-elsbetiae_contig10919.834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig10919:4639..5653+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCCAGACGACGAGATACAAGCCATGAAGATCCCGGACGGCTTTTT
CGTTCAGGCATCTCCCCCCTCTGATCTTGACAGTTCGTTGCTGCGCCGCG
GAGTGCTCGTTAGGTTGGGCATGGGGTGGTTTGGTGGGTTGATCACTCGC
CAATCTCAAGAGCGTACCCGGCACCAATACGATTACCGCGTGCATCTCGA
GGAAGACCAGAGTACCCGCAGCACGAAGCTACCGTTGGAAAAGTACAGTG
GAGACCCGGAGGCAGTGAAAGGCTCGTGGGTTTTGCTAGAAGAGATCACA
TCAGAGCAAGTGGATGGGAATTCCGTCCGGGCTGTGTTATTAGTAGATCG
GGGTGGGTATCGAGGCCCAACGTAAATGGATCCAGACGACGAGATACAAG
CCATGAAGATCCCGGACGGCTTTTTCGTTCAGGCATCTCCCCCCTCTGAT
CTTGACAGTTCGTTGCTGCGCCGCGGAGTGCTCGTTAGGTTGGGCATGGG
GTGGTTTGGTGGGTTGATCACTCGCCAATCTCAAGAGCGTACCCGGCACC
AATACGATTACCGCGTGCATCTCGAGGAAGACCAGAGTACCCGCAGCACG
AAGCTACCGTTGGAAAAGTACAGTGGAGACCCGGAGGCAGTGAAAGGCTC
GTGGGTTTTGCTAGAAGAGATCACATCAGAGCAAGTGGATGGGAATTCCG
TCCGGGCTGTGTTATTAGTAGATCGGGGTGGGTATCGAGGCCCAACGTAA
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