mRNA_L-elsbetiae_contig10916.833.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10916.833.1
Unique NamemRNA_L-elsbetiae_contig10916.833.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10916.833.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.850e-10
Identity = 110/251 (43.82%), Postives = 125/251 (49.80%), Query Frame = 3 
Query:    6 SNQSQSSGNTYGPLAAAGYGGGDAADGGSGYNRFPPINLADDGATDSPSRAEEMFSRRLGG-----EISGXXXXXXXXXXXXXXSAAMYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRQPSVAGGPTALAGSAMMFSGIDEHGGEEREGDGG------------QQLRLSPSAPLTSDDAFPAPMTNSFPASTDTPQSDYPGGRXXXXXXXXXXXXXRGAKRAGSSGPLSPSPASSAALLGPSPAA 707
            SNQSQSSGNTYGPL A   G G+     S  N+F  IN ADDG  DSP+ AEEMFSRRLGG         XXXXXXXXX     SA MY+  XXXXXXXXXXXXXXXXX            GR P+  G  TA+A                                  + LRLSP+ P+ +  AFPA        + DTP+S+ PG                   R  ++ PLSPSPASS  L GPSPAA
Sbjct: 2068 SNQSQSSGNTYGPLTA---GMGEET---SSSNKFSAINYADDGVADSPTMAEEMFSRRLGGGGRQPXXXXXXXXXXXXXLTTTGSAMMYATTXXXXXXXXXXXXXXXXXD-----------GRAPNGIGDATAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLSPAEPMAN--AFPAXXXXXXXXAMDTPESEPPGRGGGPRREFDH--------RKKAAAPLSPSPASSMHLRGPSPAA 2291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10916.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JU65_9PHAE1.850e-1043.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10916contigL-elsbetiae_contig10916:759..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1136
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10916.833.1prot_L-elsbetiae_contig10916.833.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10916 923..1546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.2109435-UTR-L-elsbetiae_contig10916:758..9221622815310.2109435-UTR-L-elsbetiae_contig10916:758..922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10916 759..922 +
1691682830.2628906-UTR-L-elsbetiae_contig10916:758..9221691682830.2628906-UTR-L-elsbetiae_contig10916:758..922Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10916 759..922 +
1622815310.2361355-UTR-L-elsbetiae_contig10916:1546..18941622815310.2361355-UTR-L-elsbetiae_contig10916:1546..1894Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10916 1547..1894 +
1691682830.280857-UTR-L-elsbetiae_contig10916:1546..18941691682830.280857-UTR-L-elsbetiae_contig10916:1546..1894Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10916 1547..1894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.223212-CDS-L-elsbetiae_contig10916:922..15461622815310.223212-CDS-L-elsbetiae_contig10916:922..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10916 923..1546 +
1691682830.2724862-CDS-L-elsbetiae_contig10916:922..15461691682830.2724862-CDS-L-elsbetiae_contig10916:922..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10916 923..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10916.833.1

>prot_L-elsbetiae_contig10916.833.1 ID=prot_L-elsbetiae_contig10916.833.1|Name=mRNA_L-elsbetiae_contig10916.833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MFSRRLGGEISGGGGGGGPPGNAGGGSAAMYSDSPTMAEEMFSRRLAGGS
GSGGNGSGSSGSKGRQPSVAGGPTALAGSAMMFSGIDEHGGEEREGDGGQ
QLRLSPSAPLTSDDAFPAPMTNSFPASTDTPQSDYPGGRGGAGGAGGGGG
IGRGAKRAGSSGPLSPSPASSAALLGPSPAASEIREDAAPGGASFGTPGT
GSKWGRG*
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mRNA from alignment at L-elsbetiae_contig10916:759..1894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10916.833.1 ID=mRNA_L-elsbetiae_contig10916.833.1|Name=mRNA_L-elsbetiae_contig10916.833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1136bp|location=Sequence derived from alignment at L-elsbetiae_contig10916:759..1894+ (Laminarionema elsbetiae ELsaHSoW15)
CGACCAGCAACCAGAGCCAGAGCAGCGGTAACACGTACGGGCCGCTTGCG
GCCGCTGGGTACGGCGGCGGTGACGCCGCGGACGGGGGCAGCGGCTACAA
CAGGTTTCCGCCGATAAACTTGGCGGACGACGGCGCCACAGACTCTCCCA
GCAGAGCCGAGGAGATGTTCTCGAGACGGCTTGGGGGTGAGATCAGCGGC
GGCGGCGGCGGTGGAGGCCCGCCGGGCAACGCGGGAGGGGGAAGTGCGGC
GATGTACTCTGACTCGCCCACCATGGCTGAGGAGATGTTCTCGAGACGAC
TTGCAGGAGGAAGCGGAAGCGGCGGCAACGGTAGCGGCAGCAGCGGGAGC
AAAGGCCGGCAGCCCAGCGTTGCAGGAGGGCCGACGGCCTTGGCCGGAAG
CGCGATGATGTTCTCGGGCATCGACGAGCACGGAGGCGAGGAACGGGAAG
GCGACGGCGGGCAACAGCTGAGGCTGAGCCCCTCCGCGCCCCTCACGAGC
GACGACGCGTTCCCGGCGCCCATGACGAACTCCTTCCCGGCGTCGACGGA
CACGCCGCAAAGCGATTACCCCGGCGGACGCGGCGGCGCCGGCGGCGCCG
GAGGTGGCGGCGGCATCGGCAGAGGCGCTAAGAGGGCGGGGAGTTCGGGG
CCGCTGTCCCCGTCCCCGGCTTCCTCTGCGGCGCTCTTGGGGCCGTCTCC
CGCCGCGTCCGAGATCAGAGAAGATGCCGCGCCGGGGGGGGCTAGTTTCG
GGACGCCGGGGACCGGTAGCAAATGGGGGAGAGGCTAGGATCTGGCGGCG
GCAACGACGCCGGCACCGGCAGCGACAGCAACCGCCGGTGGACAGGTGCT
GGCTAGGGTCTGGCGGCGGCGGCGACGCCGGCACCAGCGGCGGCAGCAAC
CGCCGGTGGACAGGTGCTAGAGCCAGGCGGAGCGGGAGTCGTTGAGGGCT
GGTGGTGTTGGAGGACGGCCAACAACGCGACCGGCGCGCGGCGCCGGTGT
GTCGTTGTGTGCGTTTTTTCCTGCTCTGTCTCTCCCATTTTTCTCTTTTT
CGTGTGTGTGGGGTGGCCGCTTCTCGTCCCGCCTCTCCTCACCCCCACAC
CCGATTTGAGCGCGTGTTTTTTTTTGGGTTCGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10916:759..1894+

>mRNA_L-elsbetiae_contig10916.833.1 ID=mRNA_L-elsbetiae_contig10916.833.1|Name=mRNA_L-elsbetiae_contig10916.833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig10916:759..1894+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTCGAGACGGCTTGGGGGTGAGATCAGCGGCGGCGGCGGCGGTGG
AGGCCCGCCGGGCAACGCGGGAGGGGGAAGTGCGGCGATGTACTCTGACT
CGCCCACCATGGCTGAGGAGATGTTCTCGAGACGACTTGCAGGAGGAAGC
GGAAGCGGCGGCAACGGTAGCGGCAGCAGCGGGAGCAAAGGCCGGCAGCC
CAGCGTTGCAGGAGGGCCGACGGCCTTGGCCGGAAGCGCGATGATGTTCT
CGGGCATCGACGAGCACGGAGGCGAGGAACGGGAAGGCGACGGCGGGCAA
CAGCTGAGGCTGAGCCCCTCCGCGCCCCTCACGAGCGACGACGCGTTCCC
GGCGCCCATGACGAACTCCTTCCCGGCGTCGACGGACACGCCGCAAAGCG
ATTACCCCGGCGGACGCGGCGGCGCCGGCGGCGCCGGAGGTGGCGGCGGC
ATCGGCAGAGGCGCTAAGAGGGCGGGGAGTTCGGGGCCGCTGTCCCCGTC
CCCGGCTTCCTCTGCGGCGCTCTTGGGGCCGTCTCCCGCCGCGTCCGAGA
TCAGAGAAGATGCCGCGCCGGGGGGGGCTAGTTTCGGGACGCCGGGGACC
GGTAGCAAATGGGGGAGAGGCTAGATGTTCTCGAGACGGCTTGGGGGTGA
GATCAGCGGCGGCGGCGGCGGTGGAGGCCCGCCGGGCAACGCGGGAGGGG
GAAGTGCGGCGATGTACTCTGACTCGCCCACCATGGCTGAGGAGATGTTC
TCGAGACGACTTGCAGGAGGAAGCGGAAGCGGCGGCAACGGTAGCGGCAG
CAGCGGGAGCAAAGGCCGGCAGCCCAGCGTTGCAGGAGGGCCGACGGCCT
TGGCCGGAAGCGCGATGATGTTCTCGGGCATCGACGAGCACGGAGGCGAG
GAACGGGAAGGCGACGGCGGGCAACAGCTGAGGCTGAGCCCCTCCGCGCC
CCTCACGAGCGACGACGCGTTCCCGGCGCCCATGACGAACTCCTTCCCGG
CGTCGACGGACACGCCGCAAAGCGATTACCCCGGCGGACGCGGCGGCGCC
GGCGGCGCCGGAGGTGGCGGCGGCATCGGCAGAGGCGCTAAGAGGGCGGG
GAGTTCGGGGCCGCTGTCCCCGTCCCCGGCTTCCTCTGCGGCGCTCTTGG
GGCCGTCTCCCGCCGCGTCCGAGATCAGAGAAGATGCCGCGCCGGGGGGG
GCTAGTTTCGGGACGCCGGGGACCGGTAGCAAATGGGGGAGAGGCTAG
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