mRNA_L-elsbetiae_contig10915.832.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10915.832.1
Unique NamemRNA_L-elsbetiae_contig10915.832.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10915.832.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.400e-69
Identity = 142/163 (87.12%), Postives = 149/163 (91.41%), Query Frame = 1 
Query:    4 FGKGEGNLLACSSEGCGRRFHMGCLEPPLSRTPKEGEWSCPVCRKRKAHAEREAKAQAKRDKKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELERQREASERRXXXXXXXXXXXXXXXXXAKLAKDAMQLEKRNKLKTK-HG 489
            FGKGEG LLAC  EGCGRRFHMGCL+PPLSRTPKEGEWSCP+CRKRKAHAEREAKAQAKRD+KKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELE+QREA ERR  XXXXXXXXXXXXXXX    + AM+LE+RNK K K HG
Sbjct:  555 FGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRERXXXXXXXXXXXXXXXXXXXQQAMKLEERNKQKGKAHG 717
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BLAST of mRNA_L-elsbetiae_contig10915.832.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 9.650e-66
Identity = 139/162 (85.80%), Postives = 146/162 (90.12%), Query Frame = 1 
Query:    4 FGKGEGNLLACSSEGCGRRFHMGCLEPPLSRTPKEGEWSCPVCRKRKAHAEREAKAQAKRDKKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELERQREASERRXXXXXXXXXXXXXXXXXAKLAKDAMQLEKRNKLKTKHG 489
            FGKGEG LLAC  EGCGRRFHMGCL+PPLSRTPKEG+WSCP+CRKR AH EREAKAQAKRD+KKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELE+QREA ERR XXXXXXXXXXXXXXXX      AM+LE+RNK K K G
Sbjct:  847 FGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGKWSCPICRKRTAHLEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERNKQKGKVG 1008
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BLAST of mRNA_L-elsbetiae_contig10915.832.1 vs. uniprot
Match: A0A836EK64_9HYME (BAZ1A protein (Fragment) n=1 Tax=Acromyrmex insinuator TaxID=230686 RepID=A0A836EK64_9HYME)

HSP 1 Score: 57.0 bits (136), Expect = 8.870e-6
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   10 KGEGNLLACSSEGCGRRFHMGCLEPPLSRTPKEGEWSCPVCRKRK 144
            K  G L+AC +  C  RFH+ C+EPPLSR P+ G WSC +C+K+K
Sbjct: 1189 KNGGKLIACDT--CPNRFHLECVEPPLSRAPR-GRWSCTICKKKK 1230
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BLAST of mRNA_L-elsbetiae_contig10915.832.1 vs. uniprot
Match: A0A6I9WE79_9HYME (bromodomain adjacent to zinc finger domain protein 1A isoform X1 n=3 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A6I9WE79_9HYME)

HSP 1 Score: 55.8 bits (133), Expect = 2.160e-5
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   19 GNLLACSSEGCGRRFHMGCLEPPLSRTPKEGEWSCPVCRKRKAHA 153
            G L+AC +  C  R+H+ C+EPPLSR P+ G WSCP C++++ +A
Sbjct: 1195 GKLIACDT--CSNRYHLECIEPPLSRAPR-GRWSCPKCKEKRRNA 1236
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BLAST of mRNA_L-elsbetiae_contig10915.832.1 vs. uniprot
Match: R1DW16_EMIHU (PHD domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DW16_EMIHU)

HSP 1 Score: 52.0 bits (123), Expect = 8.450e-5
Identity = 25/50 (50.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   25 LLACSSEGCGRRFHMGCLEPPLSRTPKEGEWSCPVCRKRKAHAEREAKAQ 174
            +L C  +GCGR +H+ CL PPL   P  GEW CP C    A AE E +AQ
Sbjct:    1 MLRCCGDGCGRSYHLFCLNPPLP-APPAGEWLCPGC----AAAEAEERAQ 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10915.832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LN05_ECTSI1.400e-6987.12PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KWU5_9PHAE9.650e-6685.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836EK64_9HYME8.870e-653.33BAZ1A protein (Fragment) n=1 Tax=Acromyrmex insinu... [more]
A0A6I9WE79_9HYME2.160e-548.89bromodomain adjacent to zinc finger domain protein... [more]
R1DW16_EMIHU8.450e-550.00PHD domain-containing protein n=2 Tax=Emiliania hu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10915contigL-elsbetiae_contig10915:3427..5892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.4
Seed ortholog evalue3.3e-60
Seed eggNOG ortholog2880.D8LN05
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionStrawberry notch and RING/FYVE/PHD-type zinc finger protein
Ec32 orthologEc-27_000900.1
Exons4
Model size695
Cds size693
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10915.832.1prot_L-elsbetiae_contig10915.832.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10915 3427..5892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.130266-CDS-L-elsbetiae_contig10915:3426..37831622815310.130266-CDS-L-elsbetiae_contig10915:3426..3783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 3427..3783 -
1691682830.210813-CDS-L-elsbetiae_contig10915:3426..37831691682830.210813-CDS-L-elsbetiae_contig10915:3426..3783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 3427..3783 -
1622815310.1422012-CDS-L-elsbetiae_contig10915:4027..41261622815310.1422012-CDS-L-elsbetiae_contig10915:4027..4126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 4028..4126 -
1691682830.2258554-CDS-L-elsbetiae_contig10915:4027..41261691682830.2258554-CDS-L-elsbetiae_contig10915:4027..4126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 4028..4126 -
1622815310.1524644-CDS-L-elsbetiae_contig10915:5290..54311622815310.1524644-CDS-L-elsbetiae_contig10915:5290..5431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 5291..5431 -
1691682830.240012-CDS-L-elsbetiae_contig10915:5290..54311691682830.240012-CDS-L-elsbetiae_contig10915:5290..5431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 5291..5431 -
1622815310.1660907-CDS-L-elsbetiae_contig10915:5796..58921622815310.1660907-CDS-L-elsbetiae_contig10915:5796..5892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 5797..5892 -
1691682830.2485123-CDS-L-elsbetiae_contig10915:5796..58921691682830.2485123-CDS-L-elsbetiae_contig10915:5796..5892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10915 5797..5892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10915.832.1

>prot_L-elsbetiae_contig10915.832.1 ID=prot_L-elsbetiae_contig10915.832.1|Name=mRNA_L-elsbetiae_contig10915.832.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
AFGKGEGNLLACSSEGCGRRFHMGCLEPPLSRTPKEGEWSCPVCRKRKAH
AEREAKAQAKRDKKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERS
VESVCDALRGYEAELERQREASERREREAKEAREAAEKTRLEAKLAKDAM
QLEKRNKLKTKHGGGGGGGGVVKAEEEEEGSGYDDPESRAELLAGEMVQL
LRGGGGRAAKKAAMQQMKKGAQAGGGAGNRG
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mRNA from alignment at L-elsbetiae_contig10915:3427..5892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10915.832.1 ID=mRNA_L-elsbetiae_contig10915.832.1|Name=mRNA_L-elsbetiae_contig10915.832.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2466bp|location=Sequence derived from alignment at L-elsbetiae_contig10915:3427..5892- (Laminarionema elsbetiae ELsaHSoW15)
GCGTTCGGCAAGGGGGAGGGGAACCTGCTCGCCTGCTCTTCGGAGGGGTG
CGGGAGGCGGTTTCACATGGGGTGCCTCGAGCCCCCTCTCTCGCGGGTGA
GGGAGAGGGGAGAGGGAGAGCCAGGGCCACTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTCTTCACATTTAAAACCGTTCTGATCTCTCTATCCAGT
ACCGTACACCTCCATGAGTCCGTACTAATCCAACACTGACGTGGTCGATG
CCCAGGTGAAGTCGTTATTTTCGCCCACCCGCACATCGTGTTGTCGCGGG
GTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTTTTAAGGCTGGTTGAC
TTGGCCCTCTCGACTATAACAGGCTCAGGTTATTGAGTCGGGCCTTTCCC
CCAACCCCTCCCCCGTTTTCCTGCGGGTTTGTTTTGCGTGGCCGACGGCG
ACGAAAACCAGACCCCGAAGGAGGGCGAGTGGTCGTGCCCCGTGTGCCGC
AAGAGGAAGGCGCACGCCGAGCGCGAGGCCAAGGCCCAGGCCAAGCGGGA
CAAGAAGAAGAGGGAGCTGGCGGCGAAGCTGGCCAAGTCGCCCGTCAAGA
CGGTGAGTCTGTGCGTCTGGTTTGGTTTCGTTTGGTCTGGTTTGGCCTGG
TCTGGTCTGGTTTGGTCTGGTTTGGTTTGGTTTTGATTCAGGCATCCCCC
GTACATACACATGTACAAACCTTCAGAACCTTGTTGCTTGGGTAGCGAGT
TGTAGAAAGGGGCCAACCGGCCGAGCACGCCTGTGTCTTGTTTTGTGGGC
TGTGCTGTGCTGTGCTGTGCTGTGCTGCTTGATTGCACTTGTGCACCGTT
GGGGGCACACTCCATTCTCCGGAGAATTTCGAGGTCTCGACTATTTCACT
AAATACACACGCAACTGCTGTTGGGTAAGTTTTTTTTTTTTTTTTTAAGG
GTTGGTGTGGGCGGGGTGGGCGCTGAACGGACCGCGACCCTTCAAAGCGC
CGTCTGGTGTTTATTCGTTGGGCCTACCCGCCTTCCTTCCTTACTTCACT
CACTCACGCCATGACTCACGCCATGACTTTCGTGGCGAGCGAAGCGAGAG
CACTAAATAAGCTTCACCCGACGACCAACCCGTAATTCTGCAGGGCGGAA
GAACCTCTCCCGGGAGTGGGGGGTTAGAATTGGGGCGGGGGGGGGGGGGT
GGTTCTTGGCGGGACCCCCCCCGACGGAGACACTTTGTGCGTTGCTTGTT
ATTTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTTCTCGC
TCTGTAAATCCATGCTTCTTTTCCTTTCATCCTCCGATTGGCCTTTTTGG
ACCAGCAGCAGAACCGGCCCTGAAAGGTCAACCGGTCGGTTCTGCAAGCC
GCTATGTAGAGCGCCGCTCTTTTCTACATACTCAAGTAGCCACAAGGACG
ACAACAACCTCCGGGCCGGCCCTGTTCATAGTTTGCTTTTCCGGTGCCTT
TTCTTGTTCCTTGTTTGTTCGTCGTGTTGTTGTTGTTGTTGACAGTCCCG
TGACAGTCCCGTTATTGTTGTTGTTGTTGTTGTTGGTGTTTCTCACATTA
CATAGCTCTCTGGTCCAGAACATGCATGTGGGCCTGTGGTGTCACAAAAA
CACGGCACACTCGACGCCGCCGAAGAAAAACTAAAGCAAAAATAAATAAG
TATGATACTACGCGGCAGGTAATACTAAACTGTGTGTGTGTGTTTGTGCG
TCTTTATTTGTGTCAGATCAAGCTTGAGGCCACGGATGGGCCGAGGAACA
TCATCGGCATCATCCTCCCGGAGCGGTCGGTCGAGAGCGTGTGCGATGCC
CTCCGCGGATACGAGGTGAAGAACGCTGAGGCTATTTATTTATTTATTTT
TCGTCGCTGCGGAAGAAAAAGGCGTGCGTGCGGCAAACACTCCACCTTGC
AGCAAAAAGCAGCAATATTTAGATGACCTTTTGATCCACGCCTGAGAAAA
ACTCCCACGCCGTCGTCTTCGATGACGTCGTCATGGCGGCGCGATGGCGC
GTATATACATAAAACACAATTATCATGTGTATAACAATTCACAACACGAA
CAATACCAGGCGGAGCTGGAGAGGCAGCGCGAGGCCAGCGAGCGCAGGGA
ACGGGAGGCCAAGGAGGCCCGCGAGGCTGCGGAAAAGACGCGCCTGGAGG
CGAAGCTCGCCAAGGACGCCATGCAGCTCGAGAAGCGCAACAAGCTCAAG
ACCAAGCACGGCGGCGGCGGCGGCGGCGGTGGCGTCGTCAAAGCCGAGGA
GGAGGAAGAGGGGAGCGGCTATGACGACCCCGAGAGCAGAGCGGAGCTGC
TGGCCGGGGAAATGGTGCAGCTCCTTCGGGGCGGAGGGGGCCGCGCCGCC
AAGAAGGCCGCGATGCAGCAGATGAAGAAGGGCGCCCAGGCGGGAGGAGG
CGCCGGCAACAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10915:3427..5892-

>mRNA_L-elsbetiae_contig10915.832.1 ID=mRNA_L-elsbetiae_contig10915.832.1|Name=mRNA_L-elsbetiae_contig10915.832.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig10915:3427..5892- (Laminarionema elsbetiae ELsaHSoW15)
GCGTTCGGCAAGGGGGAGGGGAACCTGCTCGCCTGCTCTTCGGAGGGGTG
CGGGAGGCGGTTTCACATGGGGTGCCTCGAGCCCCCTCTCTCGCGGGCGT
TCGGCAAGGGGGAGGGGAACCTGCTCGCCTGCTCTTCGGAGGGGTGCGGG
AGGCGGTTTCACATGGGGTGCCTCGAGCCCCCTCTCTCGCGGACCCCGAA
GGAGGGCGAGTGGTCGTGCCCCGTGTGCCGCAAGAGGAAGGCGCACGCCG
AGCGCGAGGCCAAGGCCCAGGCCAAGCGGGACAAGAAGAAGAGGGAGCTG
GCGGCGAAGCTGGCCAAGTCGCCCGTCAAGACGACCCCGAAGGAGGGCGA
GTGGTCGTGCCCCGTGTGCCGCAAGAGGAAGGCGCACGCCGAGCGCGAGG
CCAAGGCCCAGGCCAAGCGGGACAAGAAGAAGAGGGAGCTGGCGGCGAAG
CTGGCCAAGTCGCCCGTCAAGACGATCAAGCTTGAGGCCACGGATGGGCC
GAGGAACATCATCGGCATCATCCTCCCGGAGCGGTCGGTCGAGAGCGTGT
GCGATGCCCTCCGCGGATACGAGATCAAGCTTGAGGCCACGGATGGGCCG
AGGAACATCATCGGCATCATCCTCCCGGAGCGGTCGGTCGAGAGCGTGTG
CGATGCCCTCCGCGGATACGAGGCGGAGCTGGAGAGGCAGCGCGAGGCCA
GCGAGCGCAGGGAACGGGAGGCCAAGGAGGCCCGCGAGGCTGCGGAAAAG
ACGCGCCTGGAGGCGAAGCTCGCCAAGGACGCCATGCAGCTCGAGAAGCG
CAACAAGCTCAAGACCAAGCACGGCGGCGGCGGCGGCGGCGGTGGCGTCG
TCAAAGCCGAGGAGGAGGAAGAGGGGAGCGGCTATGACGACCCCGAGAGC
AGAGCGGAGCTGCTGGCCGGGGAAATGGTGCAGCTCCTTCGGGGCGGAGG
GGGCCGCGCCGCCAAGAAGGCCGCGATGCAGCAGATGAAGAAGGGCGCCC
AGGCGGGAGGAGGCGCCGGCAACAGGGGGGCGGAGCTGGAGAGGCAGCGC
GAGGCCAGCGAGCGCAGGGAACGGGAGGCCAAGGAGGCCCGCGAGGCTGC
GGAAAAGACGCGCCTGGAGGCGAAGCTCGCCAAGGACGCCATGCAGCTCG
AGAAGCGCAACAAGCTCAAGACCAAGCACGGCGGCGGCGGCGGCGGCGGT
GGCGTCGTCAAAGCCGAGGAGGAGGAAGAGGGGAGCGGCTATGACGACCC
CGAGAGCAGAGCGGAGCTGCTGGCCGGGGAAATGGTGCAGCTCCTTCGGG
GCGGAGGGGGCCGCGCCGCCAAGAAGGCCGCGATGCAGCAGATGAAGAAG
GGCGCCCAGGCGGGAGGAGGCGCCGGCAACAGGGGG
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