mRNA_L-elsbetiae_contig109.819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig109.819.1
Unique NamemRNA_L-elsbetiae_contig109.819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig109.819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig109contigL-elsbetiae_contig109:13367..14300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size934
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig109.819.1prot_L-elsbetiae_contig109.819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig109 13674..14210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.7757118-UTR-L-elsbetiae_contig109:13366..136731622815306.7757118-UTR-L-elsbetiae_contig109:13366..13673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig109 13367..13673 +
1691682829.1895497-UTR-L-elsbetiae_contig109:13366..136731691682829.1895497-UTR-L-elsbetiae_contig109:13366..13673Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig109 13367..13673 +
1622815306.8007433-UTR-L-elsbetiae_contig109:14210..143001622815306.8007433-UTR-L-elsbetiae_contig109:14210..14300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig109 14211..14300 +
1691682829.2175467-UTR-L-elsbetiae_contig109:14210..143001691682829.2175467-UTR-L-elsbetiae_contig109:14210..14300Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig109 14211..14300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.784772-CDS-L-elsbetiae_contig109:13673..142101622815306.784772-CDS-L-elsbetiae_contig109:13673..14210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig109 13674..14210 +
1691682829.2044916-CDS-L-elsbetiae_contig109:13673..142101691682829.2044916-CDS-L-elsbetiae_contig109:13673..14210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig109 13674..14210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig109.819.1

>prot_L-elsbetiae_contig109.819.1 ID=prot_L-elsbetiae_contig109.819.1|Name=mRNA_L-elsbetiae_contig109.819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MACFRVFIGGASAGTTFKHIKRYPDTKGTGSVRRHAHEPYCSPQARPLFW
PGQVIMLSSRWPSKAENDHRRRGRSGCDAYLLFRRATRTLRRRQVVLLFS
CRSYSLSAEVALGLGERISGGTARLSRDVLLLALTLHGWPNAAAAATSPV
GVVSVSALAAGLDICFRLHVVDSFGSEV*
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mRNA from alignment at L-elsbetiae_contig109:13367..14300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig109.819.1 ID=mRNA_L-elsbetiae_contig109.819.1|Name=mRNA_L-elsbetiae_contig109.819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=934bp|location=Sequence derived from alignment at L-elsbetiae_contig109:13367..14300+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGGACCGCGCAACTGGTGGGCTTTCGCGTGCGACTTCGCTGGCTGGGT
GAAGGTGTCACATATATGCAATACTTCATTTTTTCATATTTTACCTATCT
GTTGGGCGCAGACACCCTCTTAAATCATACAGTATGTAGCGAACATGTGT
CTGGGCTACCATGCGCCATCTCGTGCAGAGTACAATCTGAGTAGGGAGAG
ATGGAGTCGCTCCCTGCATCGAAGTCATACCGCTTTAATTGAAGCGGTAC
TCGAAAGGTGGAGTTGAGGGGAGAGGGAAGACGGTAACGCACCTCAAGGG
GGGGACAATGGCCTGCTTCCGAGTATTCATCGGTGGTGCATCAGCTGGCA
CTACGTTCAAACACATCAAGCGGTACCCCGATACCAAAGGGACAGGCAGC
GTCCGACGACACGCACACGAACCTTACTGCTCGCCTCAAGCTCGGCCCCT
TTTTTGGCCAGGTCAAGTCATCATGCTGTCATCACGCTGGCCCTCAAAAG
CAGAAAACGACCATCGAAGGCGGGGACGGTCCGGGTGTGACGCATACTTA
CTATTTCGTCGGGCCACCCGAACGCTGCGACGGCGACAAGTAGTGCTTCT
CTTCAGCTGCCGCTCCTACTCCTTGTCCGCTGAAGTCGCACTTGGCCTCG
GCGAGCGCATCAGTGGCGGCACTGCTCGCCTTTCCCGCGATGTCTTGCTC
CTTGCTCTCACGCTGCATGGGTGGCCCAACGCCGCCGCCGCGGCTACCAG
TCCGGTTGGCGTCGTCAGTGTCTCCGCCCTTGCAGCCGGTCTGGACATTT
GTTTTCGATTGCACGTGGTCGATTCGTTTGGATCCGAGGTTTGACAGAGC
GCGAGCTCGATTAGGTTTGAGGAAAGGGAGGAAGAGCGAAACCCCCTCTT
GGGGTCAAGTGCGATGGTCTCAACGGGGGTCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig109:13367..14300+

>mRNA_L-elsbetiae_contig109.819.1 ID=mRNA_L-elsbetiae_contig109.819.1|Name=mRNA_L-elsbetiae_contig109.819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig109:13367..14300+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTGCTTCCGAGTATTCATCGGTGGTGCATCAGCTGGCACTACGTT
CAAACACATCAAGCGGTACCCCGATACCAAAGGGACAGGCAGCGTCCGAC
GACACGCACACGAACCTTACTGCTCGCCTCAAGCTCGGCCCCTTTTTTGG
CCAGGTCAAGTCATCATGCTGTCATCACGCTGGCCCTCAAAAGCAGAAAA
CGACCATCGAAGGCGGGGACGGTCCGGGTGTGACGCATACTTACTATTTC
GTCGGGCCACCCGAACGCTGCGACGGCGACAAGTAGTGCTTCTCTTCAGC
TGCCGCTCCTACTCCTTGTCCGCTGAAGTCGCACTTGGCCTCGGCGAGCG
CATCAGTGGCGGCACTGCTCGCCTTTCCCGCGATGTCTTGCTCCTTGCTC
TCACGCTGCATGGGTGGCCCAACGCCGCCGCCGCGGCTACCAGTCCGGTT
GGCGTCGTCAGTGTCTCCGCCCTTGCAGCCGGTCTGGACATTTGTTTTCG
ATTGCACGTGGTCGATTCGTTTGGATCCGAGGTTTGAATGGCCTGCTTCC
GAGTATTCATCGGTGGTGCATCAGCTGGCACTACGTTCAAACACATCAAG
CGGTACCCCGATACCAAAGGGACAGGCAGCGTCCGACGACACGCACACGA
ACCTTACTGCTCGCCTCAAGCTCGGCCCCTTTTTTGGCCAGGTCAAGTCA
TCATGCTGTCATCACGCTGGCCCTCAAAAGCAGAAAACGACCATCGAAGG
CGGGGACGGTCCGGGTGTGACGCATACTTACTATTTCGTCGGGCCACCCG
AACGCTGCGACGGCGACAAGTAGTGCTTCTCTTCAGCTGCCGCTCCTACT
CCTTGTCCGCTGAAGTCGCACTTGGCCTCGGCGAGCGCATCAGTGGCGGC
ACTGCTCGCCTTTCCCGCGATGTCTTGCTCCTTGCTCTCACGCTGCATGG
GTGGCCCAACGCCGCCGCCGCGGCTACCAGTCCGGTTGGCGTCGTCAGTG
TCTCCGCCCTTGCAGCCGGTCTGGACATTTGTTTTCGATTGCACGTGGTC
GATTCGTTTGGATCCGAGGTTTGA
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