mRNA_L-elsbetiae_contig1089.812.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1089.812.1
Unique NamemRNA_L-elsbetiae_contig1089.812.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1089.812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1089contigL-elsbetiae_contig1089:14104..14588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size485
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1089.812.1prot_L-elsbetiae_contig1089.812.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1089 14166..14552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.2698588-UTR-L-elsbetiae_contig1089:14103..141651622815306.2698588-UTR-L-elsbetiae_contig1089:14103..14165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1089 14104..14165 +
1691682828.8366833-UTR-L-elsbetiae_contig1089:14103..141651691682828.8366833-UTR-L-elsbetiae_contig1089:14103..14165Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1089 14104..14165 +
1622815306.289247-UTR-L-elsbetiae_contig1089:14552..145881622815306.289247-UTR-L-elsbetiae_contig1089:14552..14588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1089 14553..14588 +
1691682828.8697739-UTR-L-elsbetiae_contig1089:14552..145881691682828.8697739-UTR-L-elsbetiae_contig1089:14552..14588Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1089 14553..14588 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.2796967-CDS-L-elsbetiae_contig1089:14165..145521622815306.2796967-CDS-L-elsbetiae_contig1089:14165..14552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1089 14166..14552 +
1691682828.8546355-CDS-L-elsbetiae_contig1089:14165..145521691682828.8546355-CDS-L-elsbetiae_contig1089:14165..14552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1089 14166..14552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1089.812.1

>prot_L-elsbetiae_contig1089.812.1 ID=prot_L-elsbetiae_contig1089.812.1|Name=mRNA_L-elsbetiae_contig1089.812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MTKNILFLFLFCVVRVCVWHPHLLGRAKILPLVRFSDQSFAAPSALAQQL
FRGARFFSGIRSAVQPLRIFEKNVVVSVPWLFRWKSGQRSRSTREKKMPM
SCPLRPLCSCIDQRSKWTLATHQNKHPH*
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mRNA from alignment at L-elsbetiae_contig1089:14104..14588+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1089.812.1 ID=mRNA_L-elsbetiae_contig1089.812.1|Name=mRNA_L-elsbetiae_contig1089.812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=485bp|location=Sequence derived from alignment at L-elsbetiae_contig1089:14104..14588+ (Laminarionema elsbetiae ELsaHSoW15)
AACAGGGATGCAAAACCTTCTCTCTTTCGCCGCTTCTGCGGTCAAACGCA
GGACAAAAAAGGATGACAAAAAACATTTTGTTTTTGTTTTTGTTTTGCGT
GGTGCGCGTCTGCGTGTGGCACCCCCACCTGCTGGGTCGCGCAAAGATAC
TGCCCCTGGTGCGTTTTTCGGACCAGAGTTTTGCCGCCCCGAGCGCTCTC
GCACAGCAGCTTTTCAGGGGCGCCCGTTTCTTTTCCGGCATTCGTTCGGC
AGTGCAACCTCTTCGCATTTTTGAGAAGAATGTGGTGGTGTCCGTCCCGT
GGCTGTTTCGTTGGAAAAGTGGCCAGCGATCCCGGAGCACTCGTGAGAAG
AAAATGCCGATGTCATGCCCGCTCCGGCCTCTATGCTCTTGCATCGATCA
AAGGTCAAAATGGACGCTTGCTACGCACCAAAACAAGCACCCTCACTGAT
GATTGCTGAAAGTCTCGAAGTACGAATGTTGACAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1089:14104..14588+

>mRNA_L-elsbetiae_contig1089.812.1 ID=mRNA_L-elsbetiae_contig1089.812.1|Name=mRNA_L-elsbetiae_contig1089.812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig1089:14104..14588+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAAAAACATTTTGTTTTTGTTTTTGTTTTGCGTGGTGCGCGTCTG
CGTGTGGCACCCCCACCTGCTGGGTCGCGCAAAGATACTGCCCCTGGTGC
GTTTTTCGGACCAGAGTTTTGCCGCCCCGAGCGCTCTCGCACAGCAGCTT
TTCAGGGGCGCCCGTTTCTTTTCCGGCATTCGTTCGGCAGTGCAACCTCT
TCGCATTTTTGAGAAGAATGTGGTGGTGTCCGTCCCGTGGCTGTTTCGTT
GGAAAAGTGGCCAGCGATCCCGGAGCACTCGTGAGAAGAAAATGCCGATG
TCATGCCCGCTCCGGCCTCTATGCTCTTGCATCGATCAAAGGTCAAAATG
GACGCTTGCTACGCACCAAAACAAGCACCCTCACTGAATGACAAAAAACA
TTTTGTTTTTGTTTTTGTTTTGCGTGGTGCGCGTCTGCGTGTGGCACCCC
CACCTGCTGGGTCGCGCAAAGATACTGCCCCTGGTGCGTTTTTCGGACCA
GAGTTTTGCCGCCCCGAGCGCTCTCGCACAGCAGCTTTTCAGGGGCGCCC
GTTTCTTTTCCGGCATTCGTTCGGCAGTGCAACCTCTTCGCATTTTTGAG
AAGAATGTGGTGGTGTCCGTCCCGTGGCTGTTTCGTTGGAAAAGTGGCCA
GCGATCCCGGAGCACTCGTGAGAAGAAAATGCCGATGTCATGCCCGCTCC
GGCCTCTATGCTCTTGCATCGATCAAAGGTCAAAATGGACGCTTGCTACG
CACCAAAACAAGCACCCTCACTGA
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