mRNA_L-elsbetiae_contig1088.806.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1088.806.1
Unique NamemRNA_L-elsbetiae_contig1088.806.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1088.806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1088contigL-elsbetiae_contig1088:19331..20173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size830
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1088.806.1prot_L-elsbetiae_contig1088.806.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1088 19519..20026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.738462-UTR-L-elsbetiae_contig1088:19330..195181622815305.738462-UTR-L-elsbetiae_contig1088:19330..19518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 19331..19518 +
1691682828.5446455-UTR-L-elsbetiae_contig1088:19330..195181691682828.5446455-UTR-L-elsbetiae_contig1088:19330..19518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 19331..19518 +
1622815305.7663822-UTR-L-elsbetiae_contig1088:20026..201731622815305.7663822-UTR-L-elsbetiae_contig1088:20026..20173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 20027..20173 +
1691682828.5744119-UTR-L-elsbetiae_contig1088:20026..201731691682828.5744119-UTR-L-elsbetiae_contig1088:20026..20173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 20027..20173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.748255-CDS-L-elsbetiae_contig1088:19518..199061622815305.748255-CDS-L-elsbetiae_contig1088:19518..19906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 19519..19906 +
1691682828.5544794-CDS-L-elsbetiae_contig1088:19518..199061691682828.5544794-CDS-L-elsbetiae_contig1088:19518..19906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 19519..19906 +
1622815305.757359-CDS-L-elsbetiae_contig1088:19919..200261622815305.757359-CDS-L-elsbetiae_contig1088:19919..20026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 19920..20026 +
1691682828.5648546-CDS-L-elsbetiae_contig1088:19919..200261691682828.5648546-CDS-L-elsbetiae_contig1088:19919..20026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 19920..20026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1088.806.1

>prot_L-elsbetiae_contig1088.806.1 ID=prot_L-elsbetiae_contig1088.806.1|Name=mRNA_L-elsbetiae_contig1088.806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MCMASGGRYTHPFDDSSVPLSFRMDSVVDACRHHGCVPGACARVLRGHGR
ACRLSDDKNPIMLSLPSPCYTCTRRIGMFVFAGLEVICIVVSHISSLVQN
ICIHGNLASLCVVEGGSDMVAYIVGLGSRRGGVRGVRAIRTCVCGCLVLP
VGPGANPGRGECTS*
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mRNA from alignment at L-elsbetiae_contig1088:19331..20173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1088.806.1 ID=mRNA_L-elsbetiae_contig1088.806.1|Name=mRNA_L-elsbetiae_contig1088.806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=843bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:19331..20173+ (Laminarionema elsbetiae ELsaHSoW15)
CATACATACCGCAGGAGGGGATACACCCCCCCCCCTCCTGTGTGACCCCG
GTCGTCTAGCCAGTCGTAGGTAGTGGAGGGAGGGGGCCAGTGGGGCAGAC
GACGATAGATAGGCCAACAAGATACATGTAGAATAGTATATCTAGTCTTT
TGGATACCTTGTTGTAGATATTTTCAGTTTTTGGCGCGATGTGCATGGCG
TCAGGCGGGCGCTACACACATCCATTCGACGACAGCAGCGTGCCTCTGTC
GTTCCGGATGGACAGTGTGGTGGACGCGTGCCGTCACCATGGATGTGTCC
CAGGAGCGTGTGCGCGCGTTTTGCGGGGGCATGGCCGCGCCTGCCGTTTG
AGCGATGACAAGAACCCCATCATGCTATCGCTTCCATCTCCATGTTACAC
GTGCACACGCCGTATAGGCATGTTTGTATTCGCCGGTCTCGAGGTCATAT
GTATTGTTGTTTCTCACATTAGCTCTCTAGTCCAAAACATATGTATTCAC
GGGAATCTTGCTTCGTTGTGCGTGGTAGAGGGCGGTTCGGACATGGTTGC
GTATATCGTGGGTTTGGGCTCTCGACGTCCTGCACGGAGGCGGCGGCGTT
CGCGGTGTCCGTGCCATCCGGACGTGTGTGTGCGGATGCCTCGTACTTCC
CGTCGGCCCCGGTGCAAACCCCGGGCGGGGAGAGTGCACGTCGTAGGGCA
TCCGGTGTCTACCGTCTCCCATCAGAACATAAGTACTTCGAAGCATGTAC
ATGTTGCTACACACAGAGTTTGGTCGCAAACGCTGGCGGACGGAGATTCG
AGCGTGATGACGGCAGTTGCGCGGGTGTTATCTGAGGAGCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1088:19331..20173+

>mRNA_L-elsbetiae_contig1088.806.1 ID=mRNA_L-elsbetiae_contig1088.806.1|Name=mRNA_L-elsbetiae_contig1088.806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:19331..20173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCATGGCGTCAGGCGGGCGCTACACACATCCATTCGACGACAGCAG
CGTGCCTCTGTCGTTCCGGATGGACAGTGTGGTGGACGCGTGCCGTCACC
ATGGATGTGTCCCAGGAGCGTGTGCGCGCGTTTTGCGGGGGCATGGCCGC
GCCTGCCGTTTGAGCGATGACAAGAACCCCATCATGCTATCGCTTCCATC
TCCATGTTACACGTGCACACGCCGTATAGGCATGTTTGTATTCGCCGGTC
TCGAGGTCATATGTATTGTTGTTTCTCACATTAGCTCTCTAGTCCAAAAC
ATATGTATTCACGGGAATCTTGCTTCGTTGTGCGTGGTAGAGGGCGGTTC
GGACATGGTTGCGTATATCGTGGGTTTGGGCTCTCGACATGTGCATGGCG
TCAGGCGGGCGCTACACACATCCATTCGACGACAGCAGCGTGCCTCTGTC
GTTCCGGATGGACAGTGTGGTGGACGCGTGCCGTCACCATGGATGTGTCC
CAGGAGCGTGTGCGCGCGTTTTGCGGGGGCATGGCCGCGCCTGCCGTTTG
AGCGATGACAAGAACCCCATCATGCTATCGCTTCCATCTCCATGTTACAC
GTGCACACGCCGTATAGGCATGTTTGTATTCGCCGGTCTCGAGGTCATAT
GTATTGTTGTTTCTCACATTAGCTCTCTAGTCCAAAACATATGTATTCAC
GGGAATCTTGCTTCGTTGTGCGTGGTAGAGGGCGGTTCGGACATGGTTGC
GTATATCGTGGGTTTGGGCTCTCGACGCGGCGGCGTTCGCGGTGTCCGTG
CCATCCGGACGTGTGTGTGCGGATGCCTCGTACTTCCCGTCGGCCCCGGT
GCAAACCCCGGGCGGGGAGAGTGCACGTCGTAGGCGGCGGCGTTCGCGGT
GTCCGTGCCATCCGGACGTGTGTGTGCGGATGCCTCGTACTTCCCGTCGG
CCCCGGTGCAAACCCCGGGCGGGGAGAGTGCACGTCGTAG
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