mRNA_L-elsbetiae_contig10871.797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10871.797.1
Unique NamemRNA_L-elsbetiae_contig10871.797.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10871.797.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 8.590e-19
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   49 LHSELSKLTGAAGALSMKQERHLAQLARVLPGTVVFFDKFCPDLHSADAGGLGG-TGPSEEEGGES 243
            LHSELSKLTGA GALSMKQER L+QLAR LPGT+VFFDKFCPDLH A AG   G T P E    E+
Sbjct:  127 LHSELSKLTGATGALSMKQERRLSQLARSLPGTMVFFDKFCPDLHGASAGATAGATDPGERSPSEA 192
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10871.797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN43_ECTSI8.590e-1972.73DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10871contigL-elsbetiae_contig10871:3018..3833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D8LN43
Preferred nameDIS3L
KEGG koko:K12585,ko:K18681
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000177,GO:0000178,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0019899,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons2
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.23288-CDS-L-elsbetiae_contig10871:3019..33461622815305.23288-CDS-L-elsbetiae_contig10871:3019..3346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10871 3020..3346 -
1691682828.264867-CDS-L-elsbetiae_contig10871:3019..33461691682828.264867-CDS-L-elsbetiae_contig10871:3019..3346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10871 3020..3346 -
1622815305.2436604-CDS-L-elsbetiae_contig10871:3710..38331622815305.2436604-CDS-L-elsbetiae_contig10871:3710..3833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10871 3711..3833 -
1691682828.278135-CDS-L-elsbetiae_contig10871:3710..38331691682828.278135-CDS-L-elsbetiae_contig10871:3710..3833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10871 3711..3833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10871.797.1prot_L-elsbetiae_contig10871.797.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10871 3020..3833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10871.797.1

>prot_L-elsbetiae_contig10871.797.1 ID=prot_L-elsbetiae_contig10871.797.1|Name=mRNA_L-elsbetiae_contig10871.797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
GGGGEEGQHVGCSLLLLHSELSKLTGAAGALSMKQERHLAQLARVLPGTV
VFFDKFCPDLHSADAGGLGGTGPSEEEGGESADGTPPPPPPPPRPLAVAP
STAMAAACGWCSVKLGNALVVVLSEDGDDDEADDRVGDDDHGGSAAAAGR
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mRNA from alignment at L-elsbetiae_contig10871:3018..3833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10871.797.1 ID=mRNA_L-elsbetiae_contig10871.797.1|Name=mRNA_L-elsbetiae_contig10871.797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig10871:3018..3833- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGCGGGGAGGAGGGGCAGCACGTGGGATGCAGTCTGCTTCTGCT
GCACTCGGAGCTGAGCAAGCTTACGGGGGCAGCGGGGGCGTTGTCCATGA
AGCAGGAGAGGCACCTTGCCCAGGTATCTAGAGCTACCGCATGAACAGTA
GTAATTGGTCTCCCCGACCGTCTTGCCTGCCGTCATGTGGAGTTCAGTTT
GTTTTTGTGGCCTATGTAGGCGTTTTGCCGCGTTTGAAGGTACATCATTC
CTCGCGCCTGTGGGAGCGCGCGTTGGATTGTTTTGGCCTGTGTTAGTCCG
CTCCGCGGAAGGTAAAAAAGGGGGGGGGGGGGGGGGGGGGGGGGGAGAAA
GAGCAAGTACACCCCTGCTGTCGAGCTGCTCAGGCCAGTGTCCCGACCAC
CCTCCCTCCTCCCGCAATCACTTACTTCACTACCTTCGTCGTGCTCGTCG
TTTTGCGGCGGCGTCCCTCTGCCGGCTGACGTTTAAGCTCGCTCGCGTGC
TCCCGGGCACGGTGGTCTTCTTCGACAAGTTCTGCCCCGACCTCCACAGC
GCCGACGCCGGCGGCCTTGGCGGAACAGGGCCCTCGGAGGAGGAGGGCGG
AGAGAGTGCCGATGGCACGCCGCCGCCGCCGCCGCCGCCGCCCAGACCCC
TCGCTGTCGCTCCCTCGACGGCGATGGCGGCGGCGTGCGGGTGGTGCAGC
GTAAAGCTCGGGAACGCGCTGGTGGTGGTGCTGTCGGAGGACGGTGATGA
TGATGAAGCCGACGACCGGGTCGGCGACGACGACCACGGCGGGAGCGCCG
CTGCTGCCGGACGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10871:3018..3833-

>mRNA_L-elsbetiae_contig10871.797.1 ID=mRNA_L-elsbetiae_contig10871.797.1|Name=mRNA_L-elsbetiae_contig10871.797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig10871:3018..3833- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGCGGGGAGGAGGGGCAGCACGTGGGATGCAGTCTGCTTCTGCT
GCACTCGGAGCTGAGCAAGCTTACGGGGGCAGCGGGGGCGTTGTCCATGA
AGCAGGAGAGGCACCTTGCCCAGGGCGGCGGCGGGGAGGAGGGGCAGCAC
GTGGGATGCAGTCTGCTTCTGCTGCACTCGGAGCTGAGCAAGCTTACGGG
GGCAGCGGGGGCGTTGTCCATGAAGCAGGAGAGGCACCTTGCCCAGCTCG
CTCGCGTGCTCCCGGGCACGGTGGTCTTCTTCGACAAGTTCTGCCCCGAC
CTCCACAGCGCCGACGCCGGCGGCCTTGGCGGAACAGGGCCCTCGGAGGA
GGAGGGCGGAGAGAGTGCCGATGGCACGCCGCCGCCGCCGCCGCCGCCGC
CCAGACCCCTCGCTGTCGCTCCCTCGACGGCGATGGCGGCGGCGTGCGGG
TGGTGCAGCGTAAAGCTCGGGAACGCGCTGGTGGTGGTGCTGTCGGAGGA
CGGTGATGATGATGAAGCCGACGACCGGGTCGGCGACGACGACCACGGCG
GGAGCGCCGCTGCTGCCGGACGGCTCGCTCGCGTGCTCCCGGGCACGGTG
GTCTTCTTCGACAAGTTCTGCCCCGACCTCCACAGCGCCGACGCCGGCGG
CCTTGGCGGAACAGGGCCCTCGGAGGAGGAGGGCGGAGAGAGTGCCGATG
GCACGCCGCCGCCGCCGCCGCCGCCGCCCAGACCCCTCGCTGTCGCTCCC
TCGACGGCGATGGCGGCGGCGTGCGGGTGGTGCAGCGTAAAGCTCGGGAA
CGCGCTGGTGGTGGTGCTGTCGGAGGACGGTGATGATGATGAAGCCGACG
ACCGGGTCGGCGACGACGACCACGGCGGGAGCGCCGCTGCTGCCGGACGG
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