mRNA_L-elsbetiae_contig10868.795.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10868.795.1
Unique NamemRNA_L-elsbetiae_contig10868.795.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10868.795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10868contigL-elsbetiae_contig10868:2048..3367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10868.795.1prot_L-elsbetiae_contig10868.795.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10868 2211..3333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.0431244-UTR-L-elsbetiae_contig10868:2047..22101622815305.0431244-UTR-L-elsbetiae_contig10868:2047..2210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10868 2048..2210 +
1691682828.0902107-UTR-L-elsbetiae_contig10868:2047..22101691682828.0902107-UTR-L-elsbetiae_contig10868:2047..2210Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10868 2048..2210 +
1622815305.0719647-UTR-L-elsbetiae_contig10868:3333..33671622815305.0719647-UTR-L-elsbetiae_contig10868:3333..3367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10868 3334..3367 +
1691682828.122467-UTR-L-elsbetiae_contig10868:3333..33671691682828.122467-UTR-L-elsbetiae_contig10868:3333..3367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10868 3334..3367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.0529535-CDS-L-elsbetiae_contig10868:2210..23751622815305.0529535-CDS-L-elsbetiae_contig10868:2210..2375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10868 2211..2375 +
1691682828.1008167-CDS-L-elsbetiae_contig10868:2210..23751691682828.1008167-CDS-L-elsbetiae_contig10868:2210..2375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10868 2211..2375 +
1622815305.0633187-CDS-L-elsbetiae_contig10868:3138..33331622815305.0633187-CDS-L-elsbetiae_contig10868:3138..3333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10868 3139..3333 +
1691682828.1123915-CDS-L-elsbetiae_contig10868:3138..33331691682828.1123915-CDS-L-elsbetiae_contig10868:3138..3333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10868 3139..3333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10868.795.1

>prot_L-elsbetiae_contig10868.795.1 ID=prot_L-elsbetiae_contig10868.795.1|Name=mRNA_L-elsbetiae_contig10868.795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MRRNCLSVATNNAIHEAAHDRSTLAEGVSLGQYPAAVKVEESAALSAMGT
AEAVEANYGRKREEAPDGSGVGTLRVTALFRYYVCFRQREYSRAESNQYT
TGHVVEIVQLRHVLPRFVE*
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mRNA from alignment at L-elsbetiae_contig10868:2048..3367+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10868.795.1 ID=mRNA_L-elsbetiae_contig10868.795.1|Name=mRNA_L-elsbetiae_contig10868.795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig10868:2048..3367+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGTGACGTGACTGGGGCAGAACATTCAGCCATGTAGGCCGCACCG
AAGGTGGTGTTGGAAGGGCGGAAAAGCGTAAAGATGGTGCCCCTCCACAA
CAGACACAAGCTGGGGCCTCTTCGGCCAGCAAGCACGCCAAATGAAACAG
AGGCAGATTTCCGATGAGGAGGAACTGCCTGTCTGTGGCGACGAATAATG
CAATCCATGAAGCGGCACACGATAGGTCGACTCTCGCGGAAGGCGTTTCC
TTGGGACAATACCCTGCTGCGGTGAAGGTGGAAGAGAGCGCCGCGCTGTC
GGCCATGGGAACCGCGGAAGCTGTCGAGGTACGTACGTTGGCAGACTTTT
GACAAGGTCAACGCGAATTATTACTACTGTGAGCCTTCACACGCACACGG
TGCCGGGGTATAAGATCGGCCTCTCACCACCAGCAAGTAAATAGTGCACT
CCTGTGGGCTTCTTTCGATACCGAAGACTACAATAGATCGGGATAATAAT
GTTCGTCATCCTAATGTAGTACAGTCGTGCACCGCATACAAGCTGTTTTG
TGCGGCTGTCGTCGTTGCTTTGTAACGCAGTTTTGGTGAAGAAGCCGTAT
ACCTTGGTTTGCACTTTGGTTTTACCTGCTCACAGCACCATCGCCGTGCT
GTCGTGTATCTGCCACGATGTCCCGATCTCAAGACAGCAGTCGTACCGGG
TTGAGGGCGCCTTTTTTTCCACAGGCATGGTGCCCCACAGAGTGTAACAA
AACGTGATTAGCCCGACAACGTTCCTGCCTTTTCTTTCTTCTCAACATAT
CTACATAGTCTAATGCCCTTGCCCAAAAGGGCACATCCTTTGATGTTCAA
AATGCCTCCATTGACCCCGAGGATGGCGAGTGTTGGTCCCTTGAAAAACA
TTTCCCTCCCGGTAAATGACCTTTTTTTGAAAGCAATGCATGTGTGTCCT
TGGCCCAGGGACGACTGTATTTATACATACATACTGTCGGTCGCGTCCCC
GCCAAAGATTGTCGTCTCCCTTTAATTTATAGCAACACCATCCGTCTGTT
TTATGCCTTCGTGTCTTGTTTTGTGTTTATACTCAATCCAGGCGAACTAC
GGGCGGAAACGAGAAGAGGCGCCGGACGGTAGCGGCGTGGGCACACTCCG
AGTAACTGCACTTTTTCGCTACTATGTGTGCTTCAGGCAAAGGGAGTATA
GCAGAGCGGAAAGCAATCAATACACAACGGGTCATGTGGTTGAAATTGTA
CAGTTGAGGCACGTTTTGCCACGGTTCGTGGAATGACAAGGGGCCTCCTG
GAATGCAGGGTAGACACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10868:2048..3367+

>mRNA_L-elsbetiae_contig10868.795.1 ID=mRNA_L-elsbetiae_contig10868.795.1|Name=mRNA_L-elsbetiae_contig10868.795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig10868:2048..3367+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGAGGAACTGCCTGTCTGTGGCGACGAATAATGCAATCCATGAAGC
GGCACACGATAGGTCGACTCTCGCGGAAGGCGTTTCCTTGGGACAATACC
CTGCTGCGGTGAAGGTGGAAGAGAGCGCCGCGCTGTCGGCCATGGGAACC
GCGGAAGCTGTCGAGATGAGGAGGAACTGCCTGTCTGTGGCGACGAATAA
TGCAATCCATGAAGCGGCACACGATAGGTCGACTCTCGCGGAAGGCGTTT
CCTTGGGACAATACCCTGCTGCGGTGAAGGTGGAAGAGAGCGCCGCGCTG
TCGGCCATGGGAACCGCGGAAGCTGTCGAGGCGAACTACGGGCGGAAACG
AGAAGAGGCGCCGGACGGTAGCGGCGTGGGCACACTCCGAGTAACTGCAC
TTTTTCGCTACTATGTGTGCTTCAGGCAAAGGGAGTATAGCAGAGCGGAA
AGCAATCAATACACAACGGGTCATGTGGTTGAAATTGTACAGTTGAGGCA
CGTTTTGCCACGGTTCGTGGAATGAGCGAACTACGGGCGGAAACGAGAAG
AGGCGCCGGACGGTAGCGGCGTGGGCACACTCCGAGTAACTGCACTTTTT
CGCTACTATGTGTGCTTCAGGCAAAGGGAGTATAGCAGAGCGGAAAGCAA
TCAATACACAACGGGTCATGTGGTTGAAATTGTACAGTTGAGGCACGTTT
TGCCACGGTTCGTGGAATGA
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