mRNA_L-elsbetiae_contig10863.792.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10863.792.1
Unique NamemRNA_L-elsbetiae_contig10863.792.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: D8LC92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC92_ECTSI)

HSP 1 Score: 223 bits (569), Expect = 1.240e-71
Identity = 109/117 (93.16%), Postives = 114/117 (97.44%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLKAVSAKR 351
            VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGY GTQMVLDPTKEEEK+GAGVMT+ALMPGSQQVTQWWQEGRFDGQK+AEALELCTDGCGCVHKMMEAKLKA + K+
Sbjct:  154 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTKK 270          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: A0A7S2UZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ52_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.130e-33
Identity = 68/130 (52.31%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFG-TQMVLDPTK---------EEEKNG----------AGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKL 330
            V++ VLQADGGEL  A TCAS+AL+DAGIEL+DLV  CSVG  G ++++LDPT+         E+  +G          AGVMTV   P SQ+VTQWWQEG+FD + +A  L LC DGC  +HK+M+ KL
Sbjct:  146 VYIWVLQADGGELGAAVTCASLALSDAGIELFDLVVGCSVGCLGGSRVLLDPTEVEISQQRAPEDSSSGGARGGKQGAKAGVMTVTFTPASQEVTQWWQEGQFDQESMARGLALCIDGCLVMHKIMKEKL 275          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.200e-28
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLKA 336
            V+V VL ADGG L  A TCAS+ALA+A IEL+DLV AC+      Q++LDPT +EE    G + VA+MP S++VTQW Q GR    + A A+ELC DGC  V  MM A+L A
Sbjct:  141 VYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLLA 252          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: L8HCU8_ACACA (3' exoribonuclease family, domain 1 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCU8_ACACA)

HSP 1 Score: 105 bits (263), Expect = 1.640e-25
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLKAVSAKR 351
            V V+VL+  GG +  A T AS+ALADAGIE+YDLV +CSVG   + ++LDP+  EEK     + VA+MP + ++TQ  Q G  +  K  EA+ELC DGC  +++MM   L   +A++
Sbjct:  146 VFVLVLEESGGMVGAAITAASLALADAGIEMYDLVASCSVGVVDSHILLDPSIAEEKAAQSNLMVAIMPSANEITQMLQTGEIEHTKAPEAIELCLDGCSKIYQMMRQNLLETAAQK 262          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: A0A507EGV0_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EGV0_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 1.840e-23
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 1
Query:    1 VHVMVLQADGGE--LAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLKA 336
            V V +L++DG    LA A TCAS+ALADAGIE+ D V AC+ GYFG+ + LDPT+EEE    G + ++ MP   +VT   Q G        +ALELC D C  +H +M+  L A
Sbjct:  139 VFVQILESDGSAACLAAAITCASLALADAGIEMVDAVAACAAGYFGSTICLDPTEEEEGYEGGSLVLSYMPSLNEVTHVIQSGETSTATTVKALELCVDACSQIHTVMQQSLAA 252          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: A0A0D6R5I5_ARACU (Uncharacterized protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R5I5_ARACU)

HSP 1 Score: 100 bits (248), Expect = 1.880e-23
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLKAVSAKR 351
            V  +VL++ GG+L V  +CAS+ALADAGI ++DLVTA SV   G  +++DPT EEE    G + VA MP   ++TQ    G +   K++EALELC D C  +  +M A LK  + ++
Sbjct:  138 VFALVLESGGGDLPVIISCASLALADAGIMMFDLVTAVSVSSIGRNLIIDPTSEEENCQDGGLMVACMPSRNEITQLTITGEWSSTKVSEALELCLDACSKLADIMRACLKEAAVEQ 254          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: A0A2I0AH60_9ASPA (Exosome complex exonuclease RRP46 like n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AH60_9ASPA)

HSP 1 Score: 99.8 bits (247), Expect = 2.540e-23
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLK 333
            +  +VL++ GG+L V  +CAS+ALADAGI +YDLV+A S+  FGT +V+DPT EEE    G   ++ MP   ++TQ+   G +   KI EALELC D C  + ++M + LK
Sbjct:  138 IFALVLESGGGDLPVIISCASLALADAGIMMYDLVSAVSLSCFGTNLVIDPTTEEEACRDGSFMISYMPSRNEITQFTLTGEWSTAKINEALELCLDACSKLAEIMRSCLK 248          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: A0A804I677_MUSAM ((wild Malaysian banana) hypothetical protein n=2 Tax=Musa TaxID=4640 RepID=A0A804I677_MUSAM)

HSP 1 Score: 99.8 bits (247), Expect = 2.640e-23
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLKAVSA 345
            V  +VL++ GG+L V  TCAS+ALADAGI +YDLV + SV  FG  +V+DPT EEE    G + +  MP   +VTQ    G +   KI EA+ELC D C  + ++M + LK  ++
Sbjct:  138 VFALVLESGGGDLPVIVTCASLALADAGIMMYDLVASVSVSCFGRNLVIDPTSEEEACQDGTLMITCMPARNEVTQLMLTGEWTTAKINEAMELCLDACSKLAEIMRSCLKEAAS 252          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: M4BVL9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVL9_HYAAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.920e-23
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGC-GCVHKMMEAKL 330
            V V VL+ +GG LA A  CAS+AL DA +E+YD+VTA SVG    ++VLDP ++EE+ G G + +A MP  ++VT   Q G+    ++ EA++LCTD C G     + A L
Sbjct:   27 VFVTVLENEGGVLAAAINCASLALVDAAVEMYDVVTAASVGIVNGRVVLDPNRDEEQRGDGRLVLAYMPSMERVTYMLQAGKIQHTQLQEAVDLCTDACTGVTRSSLTASL 137          
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Match: A0A427AC79_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427AC79_ENSVE)

HSP 1 Score: 97.4 bits (241), Expect = 3.110e-23
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 VHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTKEEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVHKMMEAKLKAVSA 345
            V  +VL++ GG+L V  TCAS+ALADAGI +YDLV + SV  FG  +V+DPT EEE    G + +  MP   +VTQ    G +   KI EA+ELC D C  + +++ + LK  ++
Sbjct:   56 VFALVLESGGGDLPVIITCASLALADAGIMMYDLVASVSVSCFGRNLVIDPTSEEEACQDGTLMITCMPARNEVTQLTLTGEWTTAKINEAMELCLDACSKLAEVVRSCLKEAAS 170          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10863.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC92_ECTSI1.240e-7193.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UZ52_9STRA3.130e-3352.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZHR0_9STRA1.200e-2853.57Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
L8HCU8_ACACA1.640e-2545.303' exoribonuclease family, domain 1 domain contain... [more]
A0A507EGV0_9FUNG1.840e-2346.49Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A0D6R5I5_ARACU1.880e-2344.44Uncharacterized protein n=2 Tax=Araucariaceae TaxI... [more]
A0A2I0AH60_9ASPA2.540e-2345.95Exosome complex exonuclease RRP46 like n=1 Tax=Apo... [more]
A0A804I677_MUSAM2.640e-2345.22(wild Malaysian banana) hypothetical protein n=2 T... [more]
M4BVL9_HYAAE2.920e-2345.05Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A427AC79_ENSVE3.110e-2344.35Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10863contigL-elsbetiae_contig10863:4511..5619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.2
Seed ortholog evalue1e-54
Seed eggNOG ortholog2880.D8LC92
KEGG koko:K12587
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1068@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons2
Model size354
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10863.792.1prot_L-elsbetiae_contig10863.792.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10863 4511..5610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.798047-CDS-L-elsbetiae_contig10863:4510..47261622815304.798047-CDS-L-elsbetiae_contig10863:4510..4726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10863 4511..4726 -
1691682827.9199586-CDS-L-elsbetiae_contig10863:4510..47261691682827.9199586-CDS-L-elsbetiae_contig10863:4510..4726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10863 4511..4726 -
1622815304.8103998-CDS-L-elsbetiae_contig10863:5481..56101622815304.8103998-CDS-L-elsbetiae_contig10863:5481..5610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10863 5482..5610 -
1691682827.93513-CDS-L-elsbetiae_contig10863:5481..56101691682827.93513-CDS-L-elsbetiae_contig10863:5481..5610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10863 5482..5610 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.8230422-UTR-L-elsbetiae_contig10863:5610..56191622815304.8230422-UTR-L-elsbetiae_contig10863:5610..5619Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10863 5611..5619 -
1691682827.9437542-UTR-L-elsbetiae_contig10863:5610..56191691682827.9437542-UTR-L-elsbetiae_contig10863:5610..5619Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10863 5611..5619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10863.792.1

>prot_L-elsbetiae_contig10863.792.1 ID=prot_L-elsbetiae_contig10863.792.1|Name=mRNA_L-elsbetiae_contig10863.792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYFGTQMVLDPTK
EEEKNGAGVMTVALMPGSQQVTQWWQEGRFDGQKIAEALELCTDGCGCVH
KMMEAKLKAVSAKR*
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mRNA from alignment at L-elsbetiae_contig10863:4511..5619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10863.792.1 ID=mRNA_L-elsbetiae_contig10863.792.1|Name=mRNA_L-elsbetiae_contig10863.792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1109bp|location=Sequence derived from alignment at L-elsbetiae_contig10863:4511..5619- (Laminarionema elsbetiae ELsaHSoW15)
GTTCACGTCATGGTCCTGCAAGCAGACGGAGGGGAGCTTGCGGTTGCCAC AACTTGCGCATCCATGGCCTTGGCTGACGCAGGAATAGAGCTCTATGACC TCGTGACGGCATGTTCCGTGGGTTACTTTGGGACGCAGGTGAGATTTCGT GCACACACAAACCCCTGCAGCAACCAACCGCTCTCACATCCTGTTCGCGG TCTCAAAGAACAAATCTAGGCTGCTTACAACCCGTGCATTTCAATCGTTG TCGTAAAACTATGTAGACATGATTTTCTTCGGTCGGGCCTCGAGAGCGCT TCGTGGAACTTGGTCGCTTGGAGCTGAGGAGCTGATTTATTTCGCGCAAT CTCTGGGCATTTGACCTTCTCTGAGTACCCGTTGTCATATTCGCGGCCCG TGGTAACCCTCGGAGGTGAGGGTCGTGTTTCGCTAGGAGCGCTGTAGCTC CTGAAGGAATCTCACAGCGAAAACCACAGGCGCATTTTTCTGCTGCTGCT GTACTTCGCAAATAGTCATTCCAAGCACTCGGCATCGTCGTGTTGCCTTG AGGTCTTAGACGAAGGGGCCCCTCATTCCCTGCATCACTCGAGGTACTAC ACTTGCGGATAAATCTTGGTCTTGGAGTGTGCACGTCTCCTGCCGAGTCT CGAAACAGGGCCCACCAACAAGAGACACACTGCTGTCCGCCAAGGCTACG GTATGTATGTACCAACCACTACACACCGGCAATGTAGACTGAACAACCTG GATAGGCTTAGCACCACTCACTCTTGATTTGTCACGAGAGCCAATAACTA TATAAATGTGCCGACTCTTGCGGACACGACACACTTTTAAACAACTTTCT CTTCCCACCCAACCGATACGCGCGACTGGCTTAATCCCCGTAGATGGTCT TAGATCCAACAAAAGAGGAAGAGAAAAACGGAGCAGGAGTTATGACTGTC GCTCTCATGCCAGGGTCACAGCAGGTTACGCAATGGTGGCAGGAAGGACG ATTTGATGGGCAGAAGATCGCCGAGGCGCTGGAGCTTTGCACGGATGGCT GCGGTTGCGTCCACAAGATGATGGAAGCTAAACTTAAAGCCGTATCGGCT AAAAGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10863:4511..5619-

>mRNA_L-elsbetiae_contig10863.792.1 ID=mRNA_L-elsbetiae_contig10863.792.1|Name=mRNA_L-elsbetiae_contig10863.792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig10863:4511..5619- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCCTGCAAGCAGACGGAGGGGAGCTTGCGGTTGCCACAACTTGCGC
ATCCATGGCCTTGGCTGACGCAGGAATAGAGCTCTATGACCTCGTGACGG
CATGTTCCGTGGGTTACTTTGGGACGCAGATGGTCCTGCAAGCAGACGGA
GGGGAGCTTGCGGTTGCCACAACTTGCGCATCCATGGCCTTGGCTGACGC
AGGAATAGAGCTCTATGACCTCGTGACGGCATGTTCCGTGGGTTACTTTG
GGACGCAGATGGTCTTAGATCCAACAAAAGAGGAAGAGAAAAACGGAGCA
GGAGTTATGACTGTCGCTCTCATGCCAGGGTCACAGCAGGTTACGCAATG
GTGGCAGGAAGGACGATTTGATGGGCAGAAGATCGCCGAGGCGCTGGAGC
TTTGCACGGATGGCTGCGGTTGCGTCCACAAGATGATGGAAGCTAAACTT
AAAGCCGTATCGGCTAAAAGATGAATGGTCTTAGATCCAACAAAAGAGGA
AGAGAAAAACGGAGCAGGAGTTATGACTGTCGCTCTCATGCCAGGGTCAC
AGCAGGTTACGCAATGGTGGCAGGAAGGACGATTTGATGGGCAGAAGATC
GCCGAGGCGCTGGAGCTTTGCACGGATGGCTGCGGTTGCGTCCACAAGAT
GATGGAAGCTAAACTTAAAGCCGTATCGGCTAAAAGATGA
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