mRNA_L-elsbetiae_contig10859.786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10859.786.1
Unique NamemRNA_L-elsbetiae_contig10859.786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10859.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10859contigL-elsbetiae_contig10859:1748..3338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size696
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10859.786.1prot_L-elsbetiae_contig10859.786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10859 1749..3021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.1497753-UTR-L-elsbetiae_contig10859:1747..17481622815304.1497753-UTR-L-elsbetiae_contig10859:1747..1748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10859 1748..1748 +
1691682827.4183757-UTR-L-elsbetiae_contig10859:1747..17481691682827.4183757-UTR-L-elsbetiae_contig10859:1747..1748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10859 1748..1748 +
1622815304.1840217-UTR-L-elsbetiae_contig10859:3021..33381622815304.1840217-UTR-L-elsbetiae_contig10859:3021..3338Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10859 3022..3338 +
1691682827.452662-UTR-L-elsbetiae_contig10859:3021..33381691682827.452662-UTR-L-elsbetiae_contig10859:3021..3338Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10859 3022..3338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.1604705-CDS-L-elsbetiae_contig10859:1748..18311622815304.1604705-CDS-L-elsbetiae_contig10859:1748..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 1749..1831 +
1691682827.4275467-CDS-L-elsbetiae_contig10859:1748..18311691682827.4275467-CDS-L-elsbetiae_contig10859:1748..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 1749..1831 +
1622815304.1744213-CDS-L-elsbetiae_contig10859:2726..30211622815304.1744213-CDS-L-elsbetiae_contig10859:2726..3021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 2727..3021 +
1691682827.437508-CDS-L-elsbetiae_contig10859:2726..30211691682827.437508-CDS-L-elsbetiae_contig10859:2726..3021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 2727..3021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10859.786.1

>prot_L-elsbetiae_contig10859.786.1 ID=prot_L-elsbetiae_contig10859.786.1|Name=mRNA_L-elsbetiae_contig10859.786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MHVFGPHTEHITAVDLLSLHEHGKQHTSAVFKSAAAASLAPPHQHPPLQV
ERASEQHRRARCGLVFMLVRRGQGCHPLSSASPFVQDTGQRHHCRHGNAW
RHHAHAIRVSQEGGSRVSRGVGTQR*
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mRNA from alignment at L-elsbetiae_contig10859:1748..3338+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10859.786.1 ID=mRNA_L-elsbetiae_contig10859.786.1|Name=mRNA_L-elsbetiae_contig10859.786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1591bp|location=Sequence derived from alignment at L-elsbetiae_contig10859:1748..3338+ (Laminarionema elsbetiae ELsaHSoW15)
CATGCATGTGTTTGGCCCGCACACAGAGCATATCACGGCAGTAGATCTCT
TGAGCCTTCATGAACACGGCAAACAGCACACAAGGTAAGTAATTAGCTTT
TGTTTTGTCAACCGTCGCCTGTGTGCCGTGAGAGACAAAAGCTGTTGTTG
TCCCACACAGTCCCCCCCACACACGGGCGCGTACACGTGAGCTCTACCCC
ACCGCCTGTATGTTGAGCTTCCTGTACGGAAGTACCACTTACATGACCCC
TACCCACTATGTGTTCACCCTGAACGATACAAAGTTGGACACCATCTGCC
ACATACAGCCAGTTTCAACGTATTGTCCACACTTTTCATACGACACGGAA
TATACCATACCCCCCCATGTTGAATAACATACCCCAAAATCAACCAACAA
CAGGAGACCTTCTGAATGCTGATTTTGTACCACTGTGGCCGGGGGCGATG
AGTGTGTCCTTCCCGTTTATTTTGGCGACAGTCCCCCCAAGTGGAGACAT
GTACTACACCTTGCGGGAGGGTTAGTTTGTCTACAGCAGTCCCCCTGGAA
ATATTTTGGCGTAGAAAGCTGGCGCTGGAAATTTAAAAACAGCGTGAAAT
ATACCAAGCTTGAATTTACTCCTTGCTCCTCCTGTAGTTGGGCTCAACTT
GGCTGTAAGTTGTCTTTGTTTTTGTTGTGATGGTTGGGGATACATACGAC
AATGTGCCTACAAGAACCTCCCACTTTTTTTTGTAAAAGGTTTACCTAGA
CCGCTGAAATACGAAGTGGTGGTTTCTACGCCAAAGAAAACTACTCACTA
CAAGTAGCCCGACCCCGTACATACAGCACGAGACGGCTCGAAAATCACCG
CTGTGTTTGATCGTTCGCCACCACACCAACAACGTTAAACACGTTGAATT
TTTCAGTGCTACTTGGTACTCCGGAGAAGAAGCAAAGCTAAACGACCGTC
TCCCGTTCGTTTGCGTGTTCTCTTCGCAGCGCTGTGTTCAAGTCGGCCGC
TGCGGCAAGTCTGGCACCCCCACACCAACACCCGCCACTTCAAGTTGAAC
GGGCCAGCGAACAACACCGACGTGCGAGATGTGGACTCGTCTTCATGCTG
GTACGACGGGGGCAGGGATGCCATCCATTGTCTTCAGCGTCACCCTTCGT
ACAAGACACTGGACAACGACATCATTGCAGACATGGGAACGCTTGGCGTC
ACCACGCTCATGCCATACGGGTAAGCCAAGAGGGGGGTAGTCGGGTATCC
CGTGGTGTTGGCACACAAAGATGAACGACTGTAGGGTAGGTGCTTAATTG
CCGTTGCCGCCAAGTTGCAGGGGTAAAGGCGCGAAATAAAAAAACATTTA
AAATCGTCATACTGTTGGTGATCTTTTGTGATTTATGGTAACCATTCGGT
CGGGATCTATCACTCCATGAGTGTCGGCCACCTTTTTTTTCTCCGCGATT
AGTGGGAGAAAATCCAACGGACATCTAATGCTTGGCTTGATATTTTCCTT
GCCAACCAACGCCCTTGCTTGTCCTTCTGCGTAGCCCTAGTGGAGGGTTT
CCAGGCCTTCGGGTTGAGGATGTGGCTGATGCATAAGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10859:1748..3338+

>mRNA_L-elsbetiae_contig10859.786.1 ID=mRNA_L-elsbetiae_contig10859.786.1|Name=mRNA_L-elsbetiae_contig10859.786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig10859:1748..3338+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGTGTTTGGCCCGCACACAGAGCATATCACGGCAGTAGATCTCTT
GAGCCTTCATGAACACGGCAAACAGCACACAAGATGCATGTGTTTGGCCC
GCACACAGAGCATATCACGGCAGTAGATCTCTTGAGCCTTCATGAACACG
GCAAACAGCACACAAGCGCTGTGTTCAAGTCGGCCGCTGCGGCAAGTCTG
GCACCCCCACACCAACACCCGCCACTTCAAGTTGAACGGGCCAGCGAACA
ACACCGACGTGCGAGATGTGGACTCGTCTTCATGCTGGTACGACGGGGGC
AGGGATGCCATCCATTGTCTTCAGCGTCACCCTTCGTACAAGACACTGGA
CAACGACATCATTGCAGACATGGGAACGCTTGGCGTCACCACGCTCATGC
CATACGGGTAAGCCAAGAGGGGGGTAGTCGGGTATCCCGTGGTGTTGGCA
CACAAAGATGACGCTGTGTTCAAGTCGGCCGCTGCGGCAAGTCTGGCACC
CCCACACCAACACCCGCCACTTCAAGTTGAACGGGCCAGCGAACAACACC
GACGTGCGAGATGTGGACTCGTCTTCATGCTGGTACGACGGGGGCAGGGA
TGCCATCCATTGTCTTCAGCGTCACCCTTCGTACAAGACACTGGACAACG
ACATCATTGCAGACATGGGAACGCTTGGCGTCACCACGCTCATGCCATAC
GGGTAAGCCAAGAGGGGGGTAGTCGGGTATCCCGTGGTGTTGGCACACAA
AGATGA
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