mRNA_L-elsbetiae_contig10841.778.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10841.778.1
Unique NamemRNA_L-elsbetiae_contig10841.778.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10841.778.1 vs. uniprot
Match: D8LQG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG4_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.670e-31
Identity = 92/193 (47.67%), Postives = 111/193 (57.51%), Query Frame = 2 
Query:  245 AAVGESSDHGR-VRFDSVVQLILVPSRKDMGEDLSQELWWNQEDYLRFRLGAIVEDNAGLLRRPLRKKRSRRVPTARAGRPPCLPDPGIAQALQSRGRSGDRSGGMRP-VRQHFKFRSLPSYGSSPSLGVQPATPPPSPEKL--PCAGGATADRVSETPPAGSAPSPCPTSAERDPAEDFDGFVSLCGLPGPI 811
            AA G ++DHGR VRFD VV+LILVPSR D+   LS ELWWN++DYL+FRLGAIVE ++G+L R LR KRS+R+    A RP       IAQAL+   R     G  RP +R+ FK        SSPS  VQP TPPPSP        G   AD +     +GS+P           AE FDG V L  LPG +
Sbjct:  134 AAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSKRIQPPAAARP-TYQHGKIAQALE---RMDGHGGSTRPPIRRQFKVH----LSSSPSFRVQPVTPPPSPANANETSIGRGVADEMDHPDASGSSPRRKGHKGWTF-AEGFDGLVGLGLLPGSV 317
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10841.778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQG4_ECTSI2.670e-3147.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10841contigL-elsbetiae_contig10841:3064..4420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005540.1
Exons2
Model size913
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10841.778.1prot_L-elsbetiae_contig10841.778.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10841 3065..4339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815302.5473695-UTR-L-elsbetiae_contig10841:3063..30641622815302.5473695-UTR-L-elsbetiae_contig10841:3063..3064Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10841 3064..3064 +
1691682826.4111621-UTR-L-elsbetiae_contig10841:3063..30641691682826.4111621-UTR-L-elsbetiae_contig10841:3063..3064Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10841 3064..3064 +
1622815302.5896504-UTR-L-elsbetiae_contig10841:4339..44201622815302.5896504-UTR-L-elsbetiae_contig10841:4339..4420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10841 4340..4420 +
1691682826.4469464-UTR-L-elsbetiae_contig10841:4339..44201691682826.4469464-UTR-L-elsbetiae_contig10841:4339..4420Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10841 4340..4420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815302.5623698-CDS-L-elsbetiae_contig10841:3064..34501622815302.5623698-CDS-L-elsbetiae_contig10841:3064..3450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10841 3065..3450 +
1691682826.4222717-CDS-L-elsbetiae_contig10841:3064..34501691682826.4222717-CDS-L-elsbetiae_contig10841:3064..3450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10841 3065..3450 +
1622815302.5771394-CDS-L-elsbetiae_contig10841:3894..43391622815302.5771394-CDS-L-elsbetiae_contig10841:3894..4339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10841 3895..4339 +
1691682826.4321334-CDS-L-elsbetiae_contig10841:3894..43391691682826.4321334-CDS-L-elsbetiae_contig10841:3894..4339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10841 3895..4339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10841.778.1

>prot_L-elsbetiae_contig10841.778.1 ID=prot_L-elsbetiae_contig10841.778.1|Name=mRNA_L-elsbetiae_contig10841.778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=277bp
MSTMSENWRCTNYPPRISHRSSPIRLDAPGSEDPNSNRPPFGSRSPVPSR
QTATRPSSTLLLLPGRPGVRWRGSRPAAAAAAAVGESSDHGRVRFDSVVQ
LILVPSRKDMGEDLSQELWWNQEDYLRFRLGAIVEDNAGLLRRPLRKKRS
RRVPTARAGRPPCLPDPGIAQALQSRGRSGDRSGGMRPVRQHFKFRSLPS
YGSSPSLGVQPATPPPSPEKLPCAGGATADRVSETPPAGSAPSPCPTSAE
RDPAEDFDGFVSLCGLPGPIATALEC*
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mRNA from alignment at L-elsbetiae_contig10841:3064..4420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10841.778.1 ID=mRNA_L-elsbetiae_contig10841.778.1|Name=mRNA_L-elsbetiae_contig10841.778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1357bp|location=Sequence derived from alignment at L-elsbetiae_contig10841:3064..4420+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTCCACGATGTCGGAGAACTGGCGTTGCACCAACTACCCGCCGAGAA
TCTCGCACCGAAGCTCTCCGATCCGACTGGATGCGCCTGGGTCGGAAGAC
CCGAACTCAAACCGGCCACCGTTTGGCTCGAGATCTCCCGTGCCAAGTCG
GCAAACTGCAACCCGTCCTTCGTCGACGCTGTTGCTGTTGCCCGGGCGAC
CCGGGGTGAGATGGCGCGGCAGCAGGCCGGCGGCGGCGGCGGCGGCGGCG
GTGGGTGAGAGTAGTGATCATGGGCGGGTTCGGTTCGATTCGGTCGTGCA
ACTGATCCTGGTACCGAGCAGAAAAGACATGGGTGAAGATCTAAGCCAAG
AGCTCTGGTGGAACCAGGAAGACTACCTGCGGTTCAGGTGCGACACGTTA
TTTTTTGTGTGTGCTGCTGCTGTGGGGGTTGTCATCTGTCCCCTGTGCGC
TGGCGGATCTCGGCTGCATCTTGTCAGCTTGCTTCCGCTCACCGTCGGCA
AGAATATCTGCGTTGTGCCGTTTCAAAACACGAGGAGGATGGTTTTGCGT
AAGCGCAGGTTTCAATCTTGCGTCGACCCCATGGTGAGGAACACAACCGA
TCCGAGGTCATCATATCAATGCAACCTCGCTGTGAAATGCGTTTGCGCGC
AAGCGCAGGTTTCAATCTCGCGCCAACCCCTTGGTAAAGCACAGATCCGA
TTTGATGTCTTCAAAGCAATCCATCGCTGCGCACGAGGCCCCCTCCTGTC
GGAGCTGATGTATCTCTGTCCGCCGTACCATTTGCCCTTTTCTTACAATA
CGCACCCCTACTGTTGTGATGTTTTGGCCAGGCTCGGCGCCATCGTAGAG
GACAACGCCGGGCTTCTGCGCCGGCCGCTCCGGAAGAAGCGCTCGAGGAG
GGTACCAACCGCGCGTGCCGGCAGACCCCCTTGCCTGCCCGACCCAGGCA
TAGCCCAGGCCCTGCAAAGCCGCGGCAGAAGCGGGGACCGCAGCGGCGGC
ATGCGCCCTGTCCGGCAACATTTCAAGTTCCGCAGCTTGCCCTCCTACGG
CTCCTCTCCGTCCTTGGGCGTCCAGCCGGCGACCCCGCCTCCTTCTCCGG
AGAAACTGCCGTGCGCGGGTGGTGCTACCGCCGACAGGGTGAGCGAGACC
CCGCCCGCCGGGTCTGCGCCCTCGCCCTGCCCGACCAGCGCCGAGAGGGA
CCCCGCAGAAGATTTTGACGGCTTCGTTAGCCTTTGCGGTCTGCCGGGAC
CTATCGCTACGGCTTTGGAGTGCTGATGGCGGTGGTGTCGGGGGAGGCTG
GGGGCGATATTGTTGATTTGACGTCAGTGAATTGCAATCGAGACGTTGAA
GCACCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10841:3064..4420+

>mRNA_L-elsbetiae_contig10841.778.1 ID=mRNA_L-elsbetiae_contig10841.778.1|Name=mRNA_L-elsbetiae_contig10841.778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1662bp|location=Sequence derived from alignment at L-elsbetiae_contig10841:3064..4420+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCACGATGTCGGAGAACTGGCGTTGCACCAACTACCCGCCGAGAAT
CTCGCACCGAAGCTCTCCGATCCGACTGGATGCGCCTGGGTCGGAAGACC
CGAACTCAAACCGGCCACCGTTTGGCTCGAGATCTCCCGTGCCAAGTCGG
CAAACTGCAACCCGTCCTTCGTCGACGCTGTTGCTGTTGCCCGGGCGACC
CGGGGTGAGATGGCGCGGCAGCAGGCCGGCGGCGGCGGCGGCGGCGGCGG
TGGGTGAGAGTAGTGATCATGGGCGGGTTCGGTTCGATTCGGTCGTGCAA
CTGATCCTGGTACCGAGCAGAAAAGACATGGGTGAAGATCTAAGCCAAGA
GCTCTGGTGGAACCAGGAAGACTACCTGCGGTTCAGATGTCCACGATGTC
GGAGAACTGGCGTTGCACCAACTACCCGCCGAGAATCTCGCACCGAAGCT
CTCCGATCCGACTGGATGCGCCTGGGTCGGAAGACCCGAACTCAAACCGG
CCACCGTTTGGCTCGAGATCTCCCGTGCCAAGTCGGCAAACTGCAACCCG
TCCTTCGTCGACGCTGTTGCTGTTGCCCGGGCGACCCGGGGTGAGATGGC
GCGGCAGCAGGCCGGCGGCGGCGGCGGCGGCGGCGGTGGGTGAGAGTAGT
GATCATGGGCGGGTTCGGTTCGATTCGGTCGTGCAACTGATCCTGGTACC
GAGCAGAAAAGACATGGGTGAAGATCTAAGCCAAGAGCTCTGGTGGAACC
AGGAAGACTACCTGCGGTTCAGGCTCGGCGCCATCGTAGAGGACAACGCC
GGGCTTCTGCGCCGGCCGCTCCGGAAGAAGCGCTCGAGGAGGGTACCAAC
CGCGCGTGCCGGCAGACCCCCTTGCCTGCCCGACCCAGGCATAGCCCAGG
CCCTGCAAAGCCGCGGCAGAAGCGGGGACCGCAGCGGCGGCATGCGCCCT
GTCCGGCAACATTTCAAGTTCCGCAGCTTGCCCTCCTACGGCTCCTCTCC
GTCCTTGGGCGTCCAGCCGGCGACCCCGCCTCCTTCTCCGGAGAAACTGC
CGTGCGCGGGTGGTGCTACCGCCGACAGGGTGAGCGAGACCCCGCCCGCC
GGGTCTGCGCCCTCGCCCTGCCCGACCAGCGCCGAGAGGGACCCCGCAGA
AGATTTTGACGGCTTCGTTAGCCTTTGCGGTCTGCCGGGACCTATCGCTA
CGGCTTTGGAGTGCTGAGCTCGGCGCCATCGTAGAGGACAACGCCGGGCT
TCTGCGCCGGCCGCTCCGGAAGAAGCGCTCGAGGAGGGTACCAACCGCGC
GTGCCGGCAGACCCCCTTGCCTGCCCGACCCAGGCATAGCCCAGGCCCTG
CAAAGCCGCGGCAGAAGCGGGGACCGCAGCGGCGGCATGCGCCCTGTCCG
GCAACATTTCAAGTTCCGCAGCTTGCCCTCCTACGGCTCCTCTCCGTCCT
TGGGCGTCCAGCCGGCGACCCCGCCTCCTTCTCCGGAGAAACTGCCGTGC
GCGGGTGGTGCTACCGCCGACAGGGTGAGCGAGACCCCGCCCGCCGGGTC
TGCGCCCTCGCCCTGCCCGACCAGCGCCGAGAGGGACCCCGCAGAAGATT
TTGACGGCTTCGTTAGCCTTTGCGGTCTGCCGGGACCTATCGCTACGGCT
TTGGAGTGCTGA
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