mRNA_L-elsbetiae_contig10834.774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10834.774.1
Unique NamemRNA_L-elsbetiae_contig10834.774.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: D8LNJ0_ECTSI (Vesicle coat complex COPI, beta sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNJ0_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 6.490e-29
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:   13 SGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            SGSDDRTVKIWDYQTKTCVQTLEGH+NNVSAVLFHKRLPIIVSAGEDGTIRLW
Sbjct:   20 SGSDDRTVKIWDYQTKTCVQTLEGHTNNVSAVLFHKRLPIIVSAGEDGTIRLW 72
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S3HJI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJI1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.490e-23
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SG+DDRTVKIWDYQTK C+QTLEGHS+NVS+V FH RLP+I+SA EDGT+RLW
Sbjct:  205 YLLSGADDRTVKIWDYQTKACLQTLEGHSHNVSSVCFHPRLPMIISASEDGTVRLW 260
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S1Y0J4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0J4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.240e-22
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SG+DD  ++IWDYQTK+CVQ LEGHSNNVSAV FH RLP+IVSA EDGT+RLW
Sbjct:  204 YLISGADDTQIRIWDYQTKSCVQVLEGHSNNVSAVCFHPRLPLIVSASEDGTVRLW 259
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S3PEI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PEI6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.520e-22
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SG+DD  +KIWDYQTKTCVQTLEGH+ NVSAV+FH +LPII+S  EDGT+R+W
Sbjct:  120 YLVSGADDLKIKIWDYQTKTCVQTLEGHTGNVSAVMFHPKLPIILSGSEDGTVRVW 175
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A293LKK5_ORNER (Vesicle coat complex COPI, beta' subunit (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LKK5_ORNER)

HSP 1 Score: 92.0 bits (227), Expect = 8.870e-21
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SG+DDR VKIWDYQ KTCVQTLEGH+ N++AV FH  LPII++  EDGT+R+W
Sbjct:   74 YLISGADDRLVKIWDYQNKTCVQTLEGHAQNITAVSFHPELPIIMTGSEDGTVRIW 129
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A7S1F1A2_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F1A2_NOCSC)

HSP 1 Score: 93.2 bits (230), Expect = 9.380e-21
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SGSDD+TV IWDYQTK CVQTL GH+NNVS  LFH  LPII++ GEDGT+R+W
Sbjct:  110 YLISGSDDKTVCIWDYQTKQCVQTLTGHTNNVSVALFHPTLPIILTGGEDGTVRVW 165
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A662WEK3_9STRA (Coatomer_WDAD domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WEK3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.390e-21
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SGSDDRTVK+WDYQTK  V TLEGH NN++AVL+H RLP+I+SA EDG +R+W
Sbjct:    6 YLLSGSDDRTVKVWDYQTKAIVHTLEGHGNNLTAVLYHPRLPLIISACEDGAVRMW 61
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: UPI0008F9C4D7 (coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C4D7)

HSP 1 Score: 92.4 bits (228), Expect = 1.750e-20
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SG+DDR VKIWDYQ KTCVQTLEGH+ N+++V FH  LPII+S  EDGT+R+W
Sbjct:  206 YLISGADDRMVKIWDYQNKTCVQTLEGHTENIASVCFHPELPIILSGSEDGTVRIW 261
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A5B7DSI3_PORTR (Coatomer subunit beta n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DSI3_PORTR)

HSP 1 Score: 87.4 bits (215), Expect = 6.670e-20
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SG+DD  VKIWDYQ KTCVQTLEGHS NVS+V FH  LPII++  ED T+R+W
Sbjct:   93 YLISGADDSLVKIWDYQNKTCVQTLEGHSQNVSSVSFHPELPIILTGSEDCTVRVW 148
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BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Match: A0A067C2D6_SAPPC (Coatomer_WDAD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2D6_SAPPC)

HSP 1 Score: 90.1 bits (222), Expect = 1.130e-19
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    4 FFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGEDGTIRLW 171
            +  SGSDD+TVK+WDYQTKT V TL+GH++N+S VL+H RLP+I+SA EDG +R+W
Sbjct:   36 YLISGSDDKTVKVWDYQTKTIVHTLDGHTHNLSDVLYHPRLPLIISACEDGAVRMW 91
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10834.774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ0_ECTSI6.490e-2998.11Vesicle coat complex COPI, beta sub-unit n=1 Tax=E... [more]
A0A7S3HJI1_9STRA2.490e-2375.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1Y0J4_9STRA2.240e-2273.21Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A7S3PEI6_9STRA2.520e-2269.64Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A293LKK5_ORNER8.870e-2166.07Vesicle coat complex COPI, beta' subunit (Fragment... [more]
A0A7S1F1A2_NOCSC9.380e-2169.64Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A662WEK3_9STRA9.390e-2167.86Coatomer_WDAD domain-containing protein (Fragment)... [more]
UPI0008F9C4D71.750e-2066.07coatomer subunit beta' n=1 Tax=Bemisia tabaci TaxI... [more]
A0A5B7DSI3_PORTR6.670e-2066.07Coatomer subunit beta n=1 Tax=Portunus tritubercul... [more]
A0A067C2D6_SAPPC1.130e-1964.29Coatomer_WDAD domain-containing protein n=1 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10834contigL-elsbetiae_contig10834:5131..5304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D8LNJ0
KEGG koko:K17302
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Ec32 ortholog descriptionVesicle coat complex COPI, beta sub-unit
Ec32 orthologEc-00_006040.1
Exons1
Model size174
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815302.0785198-CDS-L-elsbetiae_contig10834:5130..53041622815302.0785198-CDS-L-elsbetiae_contig10834:5130..5304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10834 5131..5304 -
1691682826.1451023-CDS-L-elsbetiae_contig10834:5130..53041691682826.1451023-CDS-L-elsbetiae_contig10834:5130..5304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10834 5131..5304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10834.774.1prot_L-elsbetiae_contig10834.774.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10834 5131..5304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10834.774.1

>prot_L-elsbetiae_contig10834.774.1 ID=prot_L-elsbetiae_contig10834.774.1|Name=mRNA_L-elsbetiae_contig10834.774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
MFFFSGSDDRTVKIWDYQTKTCVQTLEGHSNNVSAVLFHKRLPIIVSAGE
DGTIRLW*
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mRNA from alignment at L-elsbetiae_contig10834:5131..5304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10834.774.1 ID=mRNA_L-elsbetiae_contig10834.774.1|Name=mRNA_L-elsbetiae_contig10834.774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=174bp|location=Sequence derived from alignment at L-elsbetiae_contig10834:5131..5304- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTTTTTTCAGGGTCCGACGACCGCACCGTGAAGATCTGGGACTA
CCAGACGAAGACCTGCGTGCAGACCCTGGAGGGGCACAGCAACAACGTCT
CGGCCGTGCTGTTCCACAAGCGCCTCCCCATCATCGTCTCCGCCGGGGAG
GACGGCACCATCCGCCTCTGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10834:5131..5304-

>mRNA_L-elsbetiae_contig10834.774.1 ID=mRNA_L-elsbetiae_contig10834.774.1|Name=mRNA_L-elsbetiae_contig10834.774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig10834:5131..5304- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTTTTTTCAGGGTCCGACGACCGCACCGTGAAGATCTGGGACTA
CCAGACGAAGACCTGCGTGCAGACCCTGGAGGGGCACAGCAACAACGTCT
CGGCCGTGCTGTTCCACAAGCGCCTCCCCATCATCGTCTCCGCCGGGGAG
GACGGCACCATCCGCCTCTGGTGAATGTTTTTTTTTTCAGGGTCCGACGA
CCGCACCGTGAAGATCTGGGACTACCAGACGAAGACCTGCGTGCAGACCC
TGGAGGGGCACAGCAACAACGTCTCGGCCGTGCTGTTCCACAAGCGCCTC
CCCATCATCGTCTCCGCCGGGGAGGACGGCACCATCCGCCTCTGGTGA
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