mRNA_L-elsbetiae_contig10828.770.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10828.770.1
Unique NamemRNA_L-elsbetiae_contig10828.770.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.890e-42
Identity = 77/186 (41.40%), Postives = 115/186 (61.83%), Query Frame = 2
Query:   11 LNEDSADLHTFAEHWGNFGLLQFALAFLDQDALLAVEIPTKLCFN---CPAWFRAKVYVERLFSAEQMPTDNNAPGILREGAAVARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNKNK-FAAEEHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGL 556
            L   + DLHTFA+HWGN+GL QF+LAF+  + + A E    +       P W+R K Y E  F  EQ        G   +  A++  L+P E+LLS  Y+AVG++E W+ SM LF++A+++P+++W+ AS     +N +K    EE   L  AW D ++ + LWLDI LYDHAV++HNKQ++E+G+
Sbjct:   46 LKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRVKEYFENQFDVEQERALMQETGASND-LAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAHALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGI 230          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 4.060e-39
Identity = 76/195 (38.97%), Postives = 122/195 (62.56%), Query Frame = 2
Query:   14 NEDSADLHTFAEHWGNFGLLQFALAFLDQDALLAVEIP---TKLCF------NCPAWFRAKVYVERLFSAEQMPTDN---NAPGILREGAA-VARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNKN-KFAAEEHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGL 556
            N D  DL+ FAEHWG+FGL QFALAF+  + LLA ++    T +C       +CP W+  K+Y+++    ++    +   +  G    GAA ++  L+P +ELL+ +YAAVG++E W+ S+ LF+ A+ +P + W +   +   +N +  F  EE E L  +W+D  ++R+L LD+LLYD+AVS+HN+Q+ +YGL
Sbjct:  106 NADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSDGTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGL 300          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.320e-38
Identity = 75/182 (41.21%), Postives = 116/182 (63.74%), Query Frame = 2
Query:   20 DSADLHTFAEHWGNFGLLQFALAFLDQDALLAVEIPTKLCFNCPAWFRAKVYVE-RLFSAEQMPTDNN-APGILREGAAVARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNKNKFAAEEHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGLS 559
            +  D++ FAEHWGN G++QFALAF D + +L  E+ +      P W++AK+Y E RL  + +  T  N +   + +   +   L+P EELL +KYAAVG++E W+ SM LFD A++LP ++W   SA+   +N +   A+ ++ L  + +D ++K+ LWLDILLY+HA S+H  QL  YGL+
Sbjct:  146 EDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVKS------PPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVHDSKAK-NDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGLA 320          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.480e-37
Identity = 73/192 (38.02%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   11 LNEDSADLHTFAEHWGNFGLLQFALAFLDQDALLAVEIPTKLCFNC--------PAWFRAKVYVERLFSAEQMPTDNNAPGILREGAAVARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNK--NKFAAEEHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGL 556
            L+    DL TFAEHWGN+GL QFALA +  + +   E+ ++ C           PAW+R K Y+        +P  ++  G  +  + +A+FL  A+E LST+YAAVG++E+WD SM LF+R + L  + W K       +N   ++F       L+ AW    +K+F+WLDILLYDHA+S+H  Q+ + G+
Sbjct:  157 LDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLH-------LPHQDDFCGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGI 341          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.970e-36
Identity = 71/182 (39.01%), Postives = 109/182 (59.89%), Query Frame = 2
Query:   20 DSADLHTFAEHWGNFGLLQFALAFLDQDALLAVEIPTKLCFNCPAWFRAKVYVE-RLFSAEQMPTDNNAPGILR-EGAAVARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNKNKFAAEEHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGLS 559
            +  D++ FA+HWGN+ LLQFAL  +DQ  + A E+      + PAWF+AK+Y E RL     M T  N       +   +   L+P EELL + YAAVG++E W  SM LFD A+ +P ++W  ASA+   +       E+   L  A +D ++++++WLD+LLY++A S+H +QL+ Y L+
Sbjct:  145 EDGDIYDFAKHWGNYALLQFALGVVDQHEIFAEEV------DAPAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIVEKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDLA 320          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.440e-27
Identity = 69/198 (34.85%), Postives = 109/198 (55.05%), Query Frame = 2
Query:   11 LNEDSADLHTFAEHWGNFGLLQFALAFLDQDALLA-VEIPTKLCFN------CPAWFRAKVYVERLFSAEQ-MPTDNNAPGILREGAAVAR-----FLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAA---QRAQNKNKFAAEEHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGL 556
            ++    DL TFA+HWGNF + QFAL F+  D +   +  P     +         W++ K+Y+ER    +  +P  + A  +  + AA         L+PA +L+ + Y AVG++E W+ ++ LFD A+ +P   W    A    QR   KNK    E ETL+ AW+DS +K+++ LD+LLY+HAV + ++Q + YGL
Sbjct:  265 VDAKDVDLLTFAKHWGNFAVRQFALGFVPSDGVQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLEAPLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRL--ESETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGL 460          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 5.090e-23
Identity = 63/191 (32.98%), Postives = 102/191 (53.40%), Query Frame = 2
Query:   11 LNEDSADLHTFAEHWGNFGLLQFALAFLDQDALLAVEIPTKLCFNCPAWFRAKVYVER--------LFSAEQMPTDNNAPGILREGAAVARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNKNKFAAE-EHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGL 556
            +     DL TFA+HWGNF L QFAL F+  D +   ++              K+Y+ER        L   E M    +A       A +   L+PA +L+   Y AVG++E W+ ++RLFD  + +P  +W++  A     + +    + E ETL+ AW+DS +K+++ LD+LLY+HAV + ++Q + +GL
Sbjct:  286 MQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQEYQL--------------KMYLERPQKEDGGVLGQREAMTAHQDAAAT--PDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVDIVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGL 460          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.120e-22
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 2
Query:   11 LNEDSADLHTFAEHWGNFGLLQFALAFLDQDALL----------AVEIPTKLCFNCPAWFRAKVYVERLFSAEQMPTDNNAPGILREGAAVARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNKN-KFAAEEHETLETAWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGLS 559
            ++  + DL TFA HWGNF L QFAL F+  D +           A+ +  +     P W+  K+++           D+ +P    EG  +     P  +LL   YA VG++EDW+ ++ LFD A+ +P  +W++        N + +F  E+ + L+ A SD  I + L LD+ LY  AV I N+Q   YG++
Sbjct:  202 VSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLFLNDRSGV----ADDTSP----EGTRLEYMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTRFKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIA 387          
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Match: D8LGP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP0_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 8.790e-5
Identity = 34/94 (36.17%), Postives = 47/94 (50.00%), Query Frame = 2
Query:  278 ELLSTKYAAVGLVEDWDGSMRLFDRAVRLPNYSWKKASAAQRAQNKNKFAAEEHETLET-AWSDSMIKRFLWLDILLYDHAVSIHNKQLKEYGL 556
            +LL     AVG+VE++D  M LFDRA   P   W          NKN+    E  T    A     IK +L L ILLYDHA+ + +   +++G+
Sbjct:  106 KLLRDNSKAVGVVEEFDSKMALFDRAGVTPGTRWAATYRKLGVANKNEAPDTEQSTAPRHALLSEEIKPYLRLAILLYDHAMVVFHDLTRQHGI 199          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10828.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L061_9PHAE4.890e-4241.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS84_ECTSI4.060e-3938.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JQY7_9PHAE2.320e-3841.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY77_9PHAE1.480e-3738.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ0_9PHAE3.970e-3639.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ3_ECTSI2.440e-2734.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G716_ECTSI5.090e-2332.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G715_ECTSI5.120e-2231.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGP0_ECTSI8.790e-536.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10828contigL-elsbetiae_contig10828:4987..5746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog2880.D7FWQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSulfotransferase
Ec32 orthologEc-12_003580.1
Exons1
Model size760
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10828.770.1prot_L-elsbetiae_contig10828.770.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10828 5189..5548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.7705228-UTR-L-elsbetiae_contig10828:4986..51881622815301.7705228-UTR-L-elsbetiae_contig10828:4986..5188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10828 4987..5188 +
1691682826.020733-UTR-L-elsbetiae_contig10828:4986..51881691682826.020733-UTR-L-elsbetiae_contig10828:4986..5188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10828 4987..5188 +
1622815301.8207948-UTR-L-elsbetiae_contig10828:5548..57461622815301.8207948-UTR-L-elsbetiae_contig10828:5548..5746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10828 5549..5746 +
1691682826.0390065-UTR-L-elsbetiae_contig10828:5548..57461691682826.0390065-UTR-L-elsbetiae_contig10828:5548..5746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10828 5549..5746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.8108456-CDS-L-elsbetiae_contig10828:5188..55481622815301.8108456-CDS-L-elsbetiae_contig10828:5188..5548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10828 5189..5548 +
1691682826.0307596-CDS-L-elsbetiae_contig10828:5188..55481691682826.0307596-CDS-L-elsbetiae_contig10828:5188..5548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10828 5189..5548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10828.770.1

>prot_L-elsbetiae_contig10828.770.1 ID=prot_L-elsbetiae_contig10828.770.1|Name=mRNA_L-elsbetiae_contig10828.770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MPTDNNAPGILREGAAVARFLEPAEELLSTKYAAVGLVEDWDGSMRLFDR
AVRLPNYSWKKASAAQRAQNKNKFAAEEHETLETAWSDSMIKRFLWLDIL
LYDHAVSIHNKQLKEYGLS*
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mRNA from alignment at L-elsbetiae_contig10828:4987..5746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10828.770.1 ID=mRNA_L-elsbetiae_contig10828.770.1|Name=mRNA_L-elsbetiae_contig10828.770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=760bp|location=Sequence derived from alignment at L-elsbetiae_contig10828:4987..5746+ (Laminarionema elsbetiae ELsaHSoW15)
AGGAGGGGCCTTAAACGAGGATAGCGCAGATCTACATACGTTCGCCGAGC ACTGGGGGAACTTCGGTCTACTTCAATTCGCGTTGGCTTTCCTCGACCAA GACGCGTTGCTCGCCGTCGAGATTCCTACAAAACTCTGCTTCAACTGTCC GGCATGGTTCCGGGCAAAGGTTTATGTCGAACGTCTCTTTAGCGCAGAGC AAATGCCCACAGACAACAACGCGCCAGGCATTCTACGCGAAGGGGCTGCT GTCGCGAGGTTTCTCGAGCCAGCGGAAGAGCTACTGAGCACGAAATACGC GGCCGTGGGACTTGTGGAGGACTGGGATGGCAGCATGCGGCTGTTCGACC GCGCTGTCCGACTGCCAAATTATAGCTGGAAGAAAGCTTCTGCCGCGCAA AGAGCCCAGAACAAAAACAAGTTCGCTGCCGAGGAGCACGAGACGCTTGA GACTGCTTGGTCTGATTCCATGATCAAAAGGTTCCTGTGGTTGGACATTC TGCTGTATGACCACGCCGTGAGCATTCATAACAAGCAGCTGAAAGAGTAC GGTTTGTCGTAGAACTCCTACTGTGCGTGTACCAATAGTCGATAGATTTT AAAACCTCGATCCAGCCCTTGTCGCCGCGACGGTCACGCACCGTTTAGCT CCACGTAAGCAACCTGTACCCCTTCCCGTTCGCCAGGTTTGGCTGGTCAT ACTTATTATGCCCCGAAATGTTGATGCTTTGAGCGCCAGTGCCAAGCACG TGCAATGCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10828:4987..5746+

>mRNA_L-elsbetiae_contig10828.770.1 ID=mRNA_L-elsbetiae_contig10828.770.1|Name=mRNA_L-elsbetiae_contig10828.770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig10828:4987..5746+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCACAGACAACAACGCGCCAGGCATTCTACGCGAAGGGGCTGCTGT
CGCGAGGTTTCTCGAGCCAGCGGAAGAGCTACTGAGCACGAAATACGCGG
CCGTGGGACTTGTGGAGGACTGGGATGGCAGCATGCGGCTGTTCGACCGC
GCTGTCCGACTGCCAAATTATAGCTGGAAGAAAGCTTCTGCCGCGCAAAG
AGCCCAGAACAAAAACAAGTTCGCTGCCGAGGAGCACGAGACGCTTGAGA
CTGCTTGGTCTGATTCCATGATCAAAAGGTTCCTGTGGTTGGACATTCTG
CTGTATGACCACGCCGTGAGCATTCATAACAAGCAGCTGAAAGAGTACGG
TTTGTCGTAGATGCCCACAGACAACAACGCGCCAGGCATTCTACGCGAAG
GGGCTGCTGTCGCGAGGTTTCTCGAGCCAGCGGAAGAGCTACTGAGCACG
AAATACGCGGCCGTGGGACTTGTGGAGGACTGGGATGGCAGCATGCGGCT
GTTCGACCGCGCTGTCCGACTGCCAAATTATAGCTGGAAGAAAGCTTCTG
CCGCGCAAAGAGCCCAGAACAAAAACAAGTTCGCTGCCGAGGAGCACGAG
ACGCTTGAGACTGCTTGGTCTGATTCCATGATCAAAAGGTTCCTGTGGTT
GGACATTCTGCTGTATGACCACGCCGTGAGCATTCATAACAAGCAGCTGA
AAGAGTACGGTTTGTCGTAG
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