mRNA_L-elsbetiae_contig10801.751.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10801.751.1
Unique NamemRNA_L-elsbetiae_contig10801.751.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10801.751.1 vs. uniprot
Match: A0A7J4KB49_9ARCH (HNH endonuclease n=2 Tax=Archaea TaxID=2157 RepID=A0A7J4KB49_9ARCH)

HSP 1 Score: 49.7 bits (117), Expect = 8.050e-6
Identity = 24/61 (39.34%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:    7 RESLFLEQEGQCAFCKTGLRTDPADFDCDHIIPVRCGGPTCMTNLHLLCIRCHREKSARER 189
            R+ L   Q  +C  C   L  D  D+D  HIIP   GG T + N   +C++CHREK+ +E+
Sbjct:   60 RKELKSTQNNKCKICGIELSDDNIDYD--HIIPWEDGGKTIVANGQAICLKCHREKTRKEK 118
[Close]
BLAST of mRNA_L-elsbetiae_contig10801.751.1 vs. uniprot
Match: UPI001F4E2095 (HNH endonuclease n=1 Tax=Gordonia alkanivorans TaxID=84096 RepID=UPI001F4E2095)

HSP 1 Score: 48.9 bits (115), Expect = 9.210e-6
Identity = 22/61 (36.07%), Postives = 32/61 (52.46%), Query Frame = 1 
Query:    4 MRESLFLEQEGQCAFCKTGLRTDPADFDCDHIIPVRCGGPTCMTNLHLLCIRCHREKSARE 186
            +R  + +    +CA C  G   D    +CDH+  V+ GG   + N  LLC+ CHR K+A E
Sbjct:   22 LRAQVIIRDGNRCANC--GANGDTTRLECDHVTNVKRGGDDSLANTQLLCVDCHRTKTAAE 80
[Close]
BLAST of mRNA_L-elsbetiae_contig10801.751.1 vs. uniprot
Match: UPI00016A8A46 (HNH endonuclease n=2 Tax=Burkholderia oklahomensis TaxID=342113 RepID=UPI00016A8A46)

HSP 1 Score: 47.0 bits (110), Expect = 7.580e-5
Identity = 24/63 (38.10%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    1 EMRESLFLEQEGQCAFCKTGLRTDPADFDCDHIIPVRCGGPTCMTNLHLLCIRCHREKSARER 189
            + R+ + +  +  C  C   +RT     + DHIIP+  GG     NLHLLCI CH++K+A +R
Sbjct:   46 KQRQRIRIRDKHICQRCGIAVRTG----EVDHIIPLEQGGTNEDENLHLLCIDCHKKKTATDR 104
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10801.751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7J4KB49_9ARCH8.050e-639.34HNH endonuclease n=2 Tax=Archaea TaxID=2157 RepID=... [more]
UPI001F4E20959.210e-636.07HNH endonuclease n=1 Tax=Gordonia alkanivorans Tax... [more]
UPI00016A8A467.580e-538.10HNH endonuclease n=2 Tax=Burkholderia oklahomensis... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10801contigL-elsbetiae_contig10801:1549..1749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815300.2192252-CDS-L-elsbetiae_contig10801:1548..17461622815300.2192252-CDS-L-elsbetiae_contig10801:1548..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10801 1549..1746 -
1691682825.1748435-CDS-L-elsbetiae_contig10801:1548..17461691682825.1748435-CDS-L-elsbetiae_contig10801:1548..1746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10801 1549..1746 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815300.2303715-UTR-L-elsbetiae_contig10801:1746..17491622815300.2303715-UTR-L-elsbetiae_contig10801:1746..1749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10801 1747..1749 -
1691682825.1856587-UTR-L-elsbetiae_contig10801:1746..17491691682825.1856587-UTR-L-elsbetiae_contig10801:1746..1749Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10801 1747..1749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10801.751.1prot_L-elsbetiae_contig10801.751.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10801 1549..1746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10801.751.1

>prot_L-elsbetiae_contig10801.751.1 ID=prot_L-elsbetiae_contig10801.751.1|Name=mRNA_L-elsbetiae_contig10801.751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
MRESLFLEQEGQCAFCKTGLRTDPADFDCDHIIPVRCGGPTCMTNLHLLC
IRCHREKSARERSRPN
back to top

mRNA from alignment at L-elsbetiae_contig10801:1549..1749-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10801.751.1 ID=mRNA_L-elsbetiae_contig10801.751.1|Name=mRNA_L-elsbetiae_contig10801.751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=201bp|location=Sequence derived from alignment at L-elsbetiae_contig10801:1549..1749- (Laminarionema elsbetiae ELsaHSoW15)
GAGATGAGAGAGTCTCTGTTTCTGGAGCAAGAGGGCCAGTGCGCCTTCTG
CAAGACGGGACTCCGGACAGACCCGGCAGATTTTGACTGTGATCATATAA
TACCTGTTCGCTGCGGTGGACCTACTTGTATGACAAACCTTCATTTACTC
TGCATACGCTGCCATAGAGAGAAATCAGCACGTGAAAGGTCTCGCCCAAA
T
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10801:1549..1749-

>mRNA_L-elsbetiae_contig10801.751.1 ID=mRNA_L-elsbetiae_contig10801.751.1|Name=mRNA_L-elsbetiae_contig10801.751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig10801:1549..1749- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGAGTCTCTGTTTCTGGAGCAAGAGGGCCAGTGCGCCTTCTGCAA
GACGGGACTCCGGACAGACCCGGCAGATTTTGACTGTGATCATATAATAC
CTGTTCGCTGCGGTGGACCTACTTGTATGACAAACCTTCATTTACTCTGC
ATACGCTGCCATAGAGAGAAATCAGCACGTGAAAGGTCTCGCCCAAATAT
GAGAGAGTCTCTGTTTCTGGAGCAAGAGGGCCAGTGCGCCTTCTGCAAGA
CGGGACTCCGGACAGACCCGGCAGATTTTGACTGTGATCATATAATACCT
GTTCGCTGCGGTGGACCTACTTGTATGACAAACCTTCATTTACTCTGCAT
ACGCTGCCATAGAGAGAAATCAGCACGTGAAAGGTCTCGCCCAAAT
back to top