mRNA_L-elsbetiae_contig108.747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig108.747.1
Unique NamemRNA_L-elsbetiae_contig108.747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig108.747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig108contigL-elsbetiae_contig108:33004..33357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815298.8165965-UTR-L-elsbetiae_contig108:33003..330151622815298.8165965-UTR-L-elsbetiae_contig108:33003..33015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig108 33004..33015 +
1691682824.303464-UTR-L-elsbetiae_contig108:33003..330151691682824.303464-UTR-L-elsbetiae_contig108:33003..33015Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig108 33004..33015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815298.8260317-CDS-L-elsbetiae_contig108:33015..333571622815298.8260317-CDS-L-elsbetiae_contig108:33015..33357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig108 33016..33357 +
1691682824.312525-CDS-L-elsbetiae_contig108:33015..333571691682824.312525-CDS-L-elsbetiae_contig108:33015..33357Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig108 33016..33357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig108.747.1prot_L-elsbetiae_contig108.747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig108 33016..33357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig108.747.1

>prot_L-elsbetiae_contig108.747.1 ID=prot_L-elsbetiae_contig108.747.1|Name=mRNA_L-elsbetiae_contig108.747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MHILSWQMKNVVSRGLRVVLCDGAGRTRWRATHTCTTSCEMGNGPGLTPA
AVTALCHRVQRFGFPPSPPRLAENCTRVNMPGEPTRSEKTTGHVTLMPSR
PHFLCPLCFLSLGI
back to top

mRNA from alignment at L-elsbetiae_contig108:33004..33357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig108.747.1 ID=mRNA_L-elsbetiae_contig108.747.1|Name=mRNA_L-elsbetiae_contig108.747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig108:33004..33357+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTCCCAAACCATGCATATATTATCATGGCAAATGAAGAATGTGGTGAG
TCGAGGTTTACGGGTCGTGCTGTGCGATGGGGCTGGTAGGACCCGTTGGC
GCGCCACGCATACATGTACGACGTCATGTGAGATGGGCAATGGTCCGGGT
CTTACTCCAGCAGCGGTAACAGCTCTCTGTCATCGTGTCCAACGCTTCGG
GTTTCCACCTTCACCACCGAGACTAGCGGAGAACTGTACGCGTGTAAATA
TGCCGGGAGAACCAACTCGATCCGAAAAAACCACAGGCCACGTGACTTTG
ATGCCTTCGCGGCCTCACTTTCTCTGTCCTCTGTGTTTTCTTTCTCTTGG
TATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig108:33004..33357+

>mRNA_L-elsbetiae_contig108.747.1 ID=mRNA_L-elsbetiae_contig108.747.1|Name=mRNA_L-elsbetiae_contig108.747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig108:33004..33357+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATATATTATCATGGCAAATGAAGAATGTGGTGAGTCGAGGTTTACG
GGTCGTGCTGTGCGATGGGGCTGGTAGGACCCGTTGGCGCGCCACGCATA
CATGTACGACGTCATGTGAGATGGGCAATGGTCCGGGTCTTACTCCAGCA
GCGGTAACAGCTCTCTGTCATCGTGTCCAACGCTTCGGGTTTCCACCTTC
ACCACCGAGACTAGCGGAGAACTGTACGCGTGTAAATATGCCGGGAGAAC
CAACTCGATCCGAAAAAACCACAGGCCACGTGACTTTGATGCCTTCGCGG
CCTCACTTTCTCTGTCCTCTGTGTTTTCTTTCTCTTGGTATCATGCATAT
ATTATCATGGCAAATGAAGAATGTGGTGAGTCGAGGTTTACGGGTCGTGC
TGTGCGATGGGGCTGGTAGGACCCGTTGGCGCGCCACGCATACATGTACG
ACGTCATGTGAGATGGGCAATGGTCCGGGTCTTACTCCAGCAGCGGTAAC
AGCTCTCTGTCATCGTGTCCAACGCTTCGGGTTTCCACCTTCACCACCGA
GACTAGCGGAGAACTGTACGCGTGTAAATATGCCGGGAGAACCAACTCGA
TCCGAAAAAACCACAGGCCACGTGACTTTGATGCCTTCGCGGCCTCACTT
TCTCTGTCCTCTGTGTTTTCTTTCTCTTGGTATC
back to top