mRNA_L-elsbetiae_contig10789.732.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10789.732.1
Unique NamemRNA_L-elsbetiae_contig10789.732.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10789.732.1 vs. uniprot
Match: D7FMV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV6_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.540e-19
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:  349 MVMNTTRTKRGVAGRPKSKNGVGKKVRRILEPASREETAYEEKKDKVAAMNWVNLGKSGG 528
            M MNTTR KRG AGR +SK GV KK RRILEPASREETAYEEKK+KV++MNW NLGKSGG
Sbjct:    1 MTMNTTRAKRGAAGRGRSKTGVSKKARRILEPASREETAYEEKKEKVSSMNWGNLGKSGG 60
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10789.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMV6_ECTSI1.540e-1980.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10789contigL-elsbetiae_contig10789:2030..3660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D7FMV6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA methyltransferase activity
EggNOG OGs2QTKF@2759,COG2265@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-09_002660.1
Exons2
Model size575
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.6369174-CDS-L-elsbetiae_contig10789:2030..21441622815297.6369174-CDS-L-elsbetiae_contig10789:2030..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 2031..2144 -
1691682823.4789803-CDS-L-elsbetiae_contig10789:2030..21441691682823.4789803-CDS-L-elsbetiae_contig10789:2030..2144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 2031..2144 -
1622815297.6509619-CDS-L-elsbetiae_contig10789:3201..36601622815297.6509619-CDS-L-elsbetiae_contig10789:3201..3660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 3202..3660 -
1691682823.495133-CDS-L-elsbetiae_contig10789:3201..36601691682823.495133-CDS-L-elsbetiae_contig10789:3201..3660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10789 3202..3660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10789.732.1prot_L-elsbetiae_contig10789.732.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10789 2031..3660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10789.732.1

>prot_L-elsbetiae_contig10789.732.1 ID=prot_L-elsbetiae_contig10789.732.1|Name=mRNA_L-elsbetiae_contig10789.732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
EKRRSRQRRLTMARPRPERSVRFILSLLACCCCAHGRCQASSSGPAHVTA
VAQGTLTRQQHRQHAPHQQQALGRSSSSGTCFIPGGLSSPRAGAGRIRRS
GGRSDGGHRRSNSGRSMVMNTTRTKRGVAGRPKSKNGVGKKVRRILEPAS
REETAYEEKKDKVAAMNWVNLGKSGGGGGGGSGGKRGKAGR
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mRNA from alignment at L-elsbetiae_contig10789:2030..3660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10789.732.1 ID=mRNA_L-elsbetiae_contig10789.732.1|Name=mRNA_L-elsbetiae_contig10789.732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1631bp|location=Sequence derived from alignment at L-elsbetiae_contig10789:2030..3660- (Laminarionema elsbetiae ELsaHSoW15)
GAAAAACGTCGCTCGAGACAGAGAAGGCTCACTATGGCACGCCCCCGCCC
AGAAAGATCAGTACGGTTCATTCTGTCTTTATTGGCGTGCTGCTGCTGTG
CGCATGGACGATGTCAAGCCTCTTCCAGCGGTCCCGCCCACGTCACTGCT
GTCGCACAAGGCACCTTGACTCGCCAGCAGCACCGGCAGCATGCTCCGCA
CCAGCAGCAGGCATTGGGCCGCAGCAGCTCCTCTGGCACGTGCTTCATTC
CAGGTGGCCTTTCTTCACCACGAGCTGGTGCCGGTAGAATAAGGCGGAGT
GGCGGACGTAGTGATGGTGGTCACAGGAGAAGCAACAGCGGCCGCAGCAT
GGTGATGAACACCACGAGAACCAAGCGTGGGGTCGCAGGAAGGCCGAAGT
CTAAGAACGGGGTAGGCAAGAAAGTTCGGCGCATCTTGGAGCCTGCATCC
CGGGAAGAGGTGCGCAGAGGGGCCTATCGTTGAGAGCATCGTAGCCTGTG
CTGCTACTGCTTGTAGGTTTGCGCTGGATGGTATAGAGATGGCGGTTATT
CAGTAGGTACGCCTTTACTTACAGCACATTACTTGCAGCACACTGAGAGG
CTCACGATGTGTGCCATTAGTAAACACCAACAATATATGCAGTGCCGCTG
GAATCATGAATGAGTTTGAGTTGTCGTAAAGGCTCTGGACAAAGGGCCTT
CACATTTCTCATGACGCTGCAGCCCTTTCTCAACTAACTTGAGAGAAAAT
AACATAGAAGAGGGTGTGTGTGTGTGGTGTGTGTGTGTCCTTCCCATTTA
TTTTGGCGACAATCCCCCCAAGTGGAGACATGTACTACACCTTGCGGTGT
ACTTAGAGGTACTACACTTTGCAGTGCATTTGTCTGTACAGCTAGAACCA
ACCGGGGTCACACAGGAGGACGTGAACACTGGGGCTTTTTCTTCTTTTTT
ATCTTCTTTTTTTGCCCCACCTTCCTCCTGCGGTTCTTGCCTTGGTGTTA
TCGCGAGAAGGGTTCAGCTGTCCCTTTCCCTCGTCAACGTGATTACGTCG
AAGTTTGGTACTCACGAGGTTTTCAGCTTTCATCGCTTTCACCTGCAAAG
TCGCAAAAGAAACACTTCAGCTTGGGATTGAACTATAGACTTTGCTGCTA
GTAGGTTCGAGGTTAAACCACTAGACCACCGGGGAGACTGGGGCAAACAT
GAACATAGACAGAAGAGGGGATACGGTAAACACGACGTGACGGGTGTTGT
CAGAAGTCAATGAAGCTCGCAGTCGGGAGTGTGGCCCTATTGTATCATTC
GTTTGAAAAGTCAGTACGGCGGTGTTACACTATGCTACTAGATACCTCAG
ATGAGACACACGCGCCGGATACACAGCGTACAGCCCAAGACGAAAGAGGC
ACACCTAAGGAGCGTTTCTACACGTGAAGCCTCTCGCCCTCCCTCTCCTA
TTTTCCCTCTCCCGCTCTCTCTCTCTCTCTCTCTCTCCCCCGTTTCGACA
TGCCACGAGAGCACAGACAGCCTACGAGGAGAAGAAGGACAAGGTAGCCG
CCATGAACTGGGTCAACCTCGGTAAGTCCGGCGGCGGCGGCGGCGGCGGC
AGCGGCGGTAAACGGGGCAAAGCTGGCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10789:2030..3660-

>mRNA_L-elsbetiae_contig10789.732.1 ID=mRNA_L-elsbetiae_contig10789.732.1|Name=mRNA_L-elsbetiae_contig10789.732.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig10789:2030..3660- (Laminarionema elsbetiae ELsaHSoW15)
GAAAAACGTCGCTCGAGACAGAGAAGGCTCACTATGGCACGCCCCCGCCC
AGAAAGATCAGTACGGTTCATTCTGTCTTTATTGGCGTGCTGCTGCTGTG
CGCATGGACGATGTCAAGCCTCTTCCAGCGGTCCCGCCCACGTCACTGCT
GTCGCACAAGGCACCTTGACTCGCCAGCAGCACCGGCAGCATGCTCCGCA
CCAGCAGCAGGCATTGGGCCGCAGCAGCTCCTCTGGCACGTGCTTCATTC
CAGGTGGCCTTTCTTCACCACGAGCTGGTGCCGGTAGAATAAGGCGGAGT
GGCGGACGTAGTGATGGTGGTCACAGGAGAAGCAACAGCGGCCGCAGCAT
GGTGATGAACACCACGAGAACCAAGCGTGGGGTCGCAGGAAGGCCGAAGT
CTAAGAACGGGGTAGGCAAGAAAGTTCGGCGCATCTTGGAGCCTGCATCC
CGGGAAGAGGAAAAACGTCGCTCGAGACAGAGAAGGCTCACTATGGCACG
CCCCCGCCCAGAAAGATCAGTACGGTTCATTCTGTCTTTATTGGCGTGCT
GCTGCTGTGCGCATGGACGATGTCAAGCCTCTTCCAGCGGTCCCGCCCAC
GTCACTGCTGTCGCACAAGGCACCTTGACTCGCCAGCAGCACCGGCAGCA
TGCTCCGCACCAGCAGCAGGCATTGGGCCGCAGCAGCTCCTCTGGCACGT
GCTTCATTCCAGGTGGCCTTTCTTCACCACGAGCTGGTGCCGGTAGAATA
AGGCGGAGTGGCGGACGTAGTGATGGTGGTCACAGGAGAAGCAACAGCGG
CCGCAGCATGGTGATGAACACCACGAGAACCAAGCGTGGGGTCGCAGGAA
GGCCGAAGTCTAAGAACGGGGTAGGCAAGAAAGTTCGGCGCATCTTGGAG
CCTGCATCCCGGGAAGAGACAGCCTACGAGGAGAAGAAGGACAAGGTAGC
CGCCATGAACTGGGTCAACCTCGGTAAGTCCGGCGGCGGCGGCGGCGGCG
GCAGCGGCGGTAAACGGGGCAAAGCTGGCCGAACAGCCTACGAGGAGAAG
AAGGACAAGGTAGCCGCCATGAACTGGGTCAACCTCGGTAAGTCCGGCGG
CGGCGGCGGCGGCGGCAGCGGCGGTAAACGGGGCAAAGCTGGCCGA
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