mRNA_L-elsbetiae_contig1078.723.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1078.723.1
Unique NamemRNA_L-elsbetiae_contig1078.723.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1078.723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1078contigL-elsbetiae_contig1078:14746..15458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size713
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1078.723.1prot_L-elsbetiae_contig1078.723.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1078 14770..15138 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.4923477-UTR-L-elsbetiae_contig1078:14745..147691622815296.4923477-UTR-L-elsbetiae_contig1078:14745..14769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 14746..14769 +
1691682822.9936821-UTR-L-elsbetiae_contig1078:14745..147691691682822.9936821-UTR-L-elsbetiae_contig1078:14745..14769Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 14746..14769 +
1622815296.5798302-UTR-L-elsbetiae_contig1078:15138..154581622815296.5798302-UTR-L-elsbetiae_contig1078:15138..15458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 15139..15458 +
1691682823.0134268-UTR-L-elsbetiae_contig1078:15138..154581691682823.0134268-UTR-L-elsbetiae_contig1078:15138..15458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1078 15139..15458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.5665693-CDS-L-elsbetiae_contig1078:14769..151381622815296.5665693-CDS-L-elsbetiae_contig1078:14769..15138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1078 14770..15138 +
1691682823.00534-CDS-L-elsbetiae_contig1078:14769..151381691682823.00534-CDS-L-elsbetiae_contig1078:14769..15138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1078 14770..15138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1078.723.1

>prot_L-elsbetiae_contig1078.723.1 ID=prot_L-elsbetiae_contig1078.723.1|Name=mRNA_L-elsbetiae_contig1078.723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MSMVAIFLARHIFFVRPARRGPQRASKLTPFCQKQTSLTTPTHRLQQYES
FEKSHGLFELPSPPHTRVYTPSVRSHLSSMLVLLTPLTRHTQRFFTRLCL
PLAPHSTCTIQPHQSRRLSEVD*
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mRNA from alignment at L-elsbetiae_contig1078:14746..15458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1078.723.1 ID=mRNA_L-elsbetiae_contig1078.723.1|Name=mRNA_L-elsbetiae_contig1078.723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=713bp|location=Sequence derived from alignment at L-elsbetiae_contig1078:14746..15458+ (Laminarionema elsbetiae ELsaHSoW15)
CACGACCACGTAACAGAAAAAAAAATGTCGATGGTGGCGATTTTCCTCGC
TCGTCACATCTTTTTTGTCCGACCTGCTCGACGGGGACCCCAAAGAGCCT
CCAAACTAACTCCATTCTGTCAAAAACAAACCAGCCTCACAACCCCAACC
CACCGACTACAGCAGTATGAGAGCTTCGAAAAGTCTCATGGGCTTTTCGA
ACTCCCATCCCCACCCCACACAAGAGTCTATACTCCATCTGTCCGCTCCC
ATCTCTCCTCTATGCTCGTCCTTTTAACCCCACTCACGCGCCACACGCAA
CGGTTCTTCACACGCCTATGTCTTCCCCTCGCTCCACACTCCACATGTAC
TATTCAGCCCCACCAGTCACGCCGACTATCCGAAGTAGACTAGCTGCCTG
CGTGTGTGCCGCGCACTAGCGCAGCCTGGTTTTTAAGTGCAGCAAACATC
CCAGCCAACCGCAACTACATACATACACACGCCAACAACAAAGTCTACGA
CACACAAATCTCTACGCCCCTTGAAATATACCAGAACCGTGTTTTTCTAT
CAGTAGCCCACCACCGAATCGTCTCAAAAACCCACGCGCGGCTCACACAC
AAACAACCCCCTGCCCCCGACTTCTTCAGACAATCATTTCCGGCACAAAA
CGTGCCCCCATGCTGCACCACATAGACAGTGAGTGCTCACCGAATACCGA
GCCCTATCCCTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1078:14746..15458+

>mRNA_L-elsbetiae_contig1078.723.1 ID=mRNA_L-elsbetiae_contig1078.723.1|Name=mRNA_L-elsbetiae_contig1078.723.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig1078:14746..15458+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGATGGTGGCGATTTTCCTCGCTCGTCACATCTTTTTTGTCCGACC
TGCTCGACGGGGACCCCAAAGAGCCTCCAAACTAACTCCATTCTGTCAAA
AACAAACCAGCCTCACAACCCCAACCCACCGACTACAGCAGTATGAGAGC
TTCGAAAAGTCTCATGGGCTTTTCGAACTCCCATCCCCACCCCACACAAG
AGTCTATACTCCATCTGTCCGCTCCCATCTCTCCTCTATGCTCGTCCTTT
TAACCCCACTCACGCGCCACACGCAACGGTTCTTCACACGCCTATGTCTT
CCCCTCGCTCCACACTCCACATGTACTATTCAGCCCCACCAGTCACGCCG
ACTATCCGAAGTAGACTAGATGTCGATGGTGGCGATTTTCCTCGCTCGTC
ACATCTTTTTTGTCCGACCTGCTCGACGGGGACCCCAAAGAGCCTCCAAA
CTAACTCCATTCTGTCAAAAACAAACCAGCCTCACAACCCCAACCCACCG
ACTACAGCAGTATGAGAGCTTCGAAAAGTCTCATGGGCTTTTCGAACTCC
CATCCCCACCCCACACAAGAGTCTATACTCCATCTGTCCGCTCCCATCTC
TCCTCTATGCTCGTCCTTTTAACCCCACTCACGCGCCACACGCAACGGTT
CTTCACACGCCTATGTCTTCCCCTCGCTCCACACTCCACATGTACTATTC
AGCCCCACCAGTCACGCCGACTATCCGAAGTAGACTAG
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