mRNA_L-elsbetiae_contig10770.719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10770.719.1
Unique NamemRNA_L-elsbetiae_contig10770.719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10770.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10770contigL-elsbetiae_contig10770:3032..3509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size479
Cds size117
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.2548344-UTR-L-elsbetiae_contig10770:3031..33921622815296.2548344-UTR-L-elsbetiae_contig10770:3031..3392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10770 3032..3392 +
1691682822.8811593-UTR-L-elsbetiae_contig10770:3031..33921691682822.8811593-UTR-L-elsbetiae_contig10770:3031..3392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10770 3032..3392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.2675838-CDS-L-elsbetiae_contig10770:3392..35091622815296.2675838-CDS-L-elsbetiae_contig10770:3392..3509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10770 3393..3509 +
1691682822.894265-CDS-L-elsbetiae_contig10770:3392..35091691682822.894265-CDS-L-elsbetiae_contig10770:3392..3509Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10770 3393..3509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10770.719.1prot_L-elsbetiae_contig10770.719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10770 3393..3509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10770.719.1

>prot_L-elsbetiae_contig10770.719.1 ID=prot_L-elsbetiae_contig10770.719.1|Name=mRNA_L-elsbetiae_contig10770.719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
MIAVGDGRVKPRAASGLLPSYCVENPAVSSGIICPSTLS
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mRNA from alignment at L-elsbetiae_contig10770:3032..3509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10770.719.1 ID=mRNA_L-elsbetiae_contig10770.719.1|Name=mRNA_L-elsbetiae_contig10770.719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=478bp|location=Sequence derived from alignment at L-elsbetiae_contig10770:3032..3509+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGTCGTGGCACTCTGCTACTGGTATTCGGGGCAGGGAGCTGTCGATCG
CGAGACGGCGAAGGTTGGCGACACAATCCCTTTGACGCACGGCCAGGTTC
GTGAGAGGACGTTCCTGTGCATGCTGCTTGAGGAGTTCAAGGACGCTGTG
CGGTTCTGGCAACAGCCAACTGACGCCCCAGCTTTCAACGGTGTATTACC
GACCCTTGTAGCACGACGGTCTTTAATATACATCGCGCGAGGTACGCGTC
GACCGCGATCTGTGCAAGGCCCGTTCTCGCGGAAGCAGGTGGATCTGTTT
GGATACTGCACCAATTTCCACACGGGCCACGTAAAGACGTGGTCGAGTAG
CTTCGACAACAATGATAGCTGTTGGGGATGGCCGGGTTAAACCCCGAGCC
GCGAGTGGCTTATTGCCTAGCTATTGCGTAGAGAATCCCGCCGTGTCAAG
TGGTATTATTTGTCCATCGACGCTGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10770:3032..3509+

>mRNA_L-elsbetiae_contig10770.719.1 ID=mRNA_L-elsbetiae_contig10770.719.1|Name=mRNA_L-elsbetiae_contig10770.719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig10770:3032..3509+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAGCTGTTGGGGATGGCCGGGTTAAACCCCGAGCCGCGAGTGGCTT
ATTGCCTAGCTATTGCGTAGAGAATCCCGCCGTGTCAAGTGGTATTATTT
GTCCATCGACGCTGTCGATGATAGCTGTTGGGGATGGCCGGGTTAAACCC
CGAGCCGCGAGTGGCTTATTGCCTAGCTATTGCGTAGAGAATCCCGCCGT
GTCAAGTGGTATTATTTGTCCATCGACGCTGTCG
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