mRNA_L-elsbetiae_contig10765.709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10765.709.1
Unique NamemRNA_L-elsbetiae_contig10765.709.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: D8LLK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK4_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.260e-38
Identity = 67/72 (93.06%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:   16 LQVDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            LQVDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFL+DKAL+++GFVWRRPVYAAE+AA
Sbjct:   67 LQVDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLTDKALSATGFVWRRPVYAAEDAA 138
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: A0A6H5K333_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K333_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.300e-25
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:   64 MLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEA 228
            MLALTGMGFDLNFPANRLKQAYGEAACSVLNFL+DKAL+++GFVWRRPVYAAE+A
Sbjct:    1 MLALTGMGFDLNFPANRLKQAYGEAACSVLNFLTDKALSATGFVWRRPVYAAEDA 55
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: T0QS21_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QS21_SAPDV)

HSP 1 Score: 99.4 bits (246), Expect = 1.910e-22
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+LAL  MGF L+FPA +LKQ YGEA CS L F+ DKALA+ GF W +P Y  EE A
Sbjct:   93 VDKYDDPNTSVNKLILALKIMGFPLDFPAAKLKQGYGEAVCSALEFICDKALAAKGFSWTKPKYPKEEYA 162
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: A0A6G0XEZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEZ7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.470e-22
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+LAL  MGF L+FPA +LKQ YGEA C+ L F+ DKALA+ GF W +P Y  EE A
Sbjct:   91 VDKYDDPNTSVNKLILALKMMGFPLDFPAAKLKQGYGEAVCTTLEFICDKALAAKGFAWAKPNYPKEEYA 160
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: A0A485KRK3_9STRA (Aste57867_10634 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRK3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.560e-22
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+LAL  MGF L+FPA +LKQ +GEAAC+ L F+ DKALA+ GF W +P Y  EE A
Sbjct:   91 VDKYDDPNTSVNKLILALKMMGFPLDFPAAKLKQGFGEAACTTLEFICDKALAAKGFTWAKPNYPKEEYA 160
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: A0A1V9ZM18_9STRA (Intraflagellar Transport Protein 57 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZM18_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.860e-22
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+LAL  MGF L+FPA +LKQ YGEA C+ L F+ DKALA+ GF W +P Y  EE A
Sbjct:   92 VDKYDDPNTSVNKLILALKMMGFSLDFPATKLKQGYGEAVCAALEFICDKALAARGFNWTKPKYPKEEYA 161
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: A0A8K1C707_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C707_PYTOL)

HSP 1 Score: 97.4 bits (241), Expect = 9.420e-22
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+LAL  MGF L+FPA++LK  YGEAAC+ L+F+SDKAL++  F W RP Y  E+ A
Sbjct:   90 VDKYDDPNTSVNKLILALKVMGFPLDFPASKLKLGYGEAACAALDFISDKALSARNFAWPRPSYPKEDFA 159
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: W4HCS8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCS8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.330e-21
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+L+L  MGF L+FPA +LKQ +GEA CS L F+ DKALA+ GF W +P Y  EE A
Sbjct:   92 VDKYDDPNTSVNKLILSLKIMGFPLDFPAAKLKQGFGEAVCSTLEFICDKALAAKGFAWAKPNYPKEEYA 161
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: A0A397AAJ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AAJ3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.560e-21
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+L+L  MGF L+FPA +LKQ +GEA CS L F+ DKALA+ GF W +P Y  EE A
Sbjct:  389 VDKYDDPNTSVNKLILSLKIMGFPLDFPAAKLKQGFGEAVCSTLEFICDKALAAKGFAWAKPNYPKEEYA 458
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BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Match: A0A024UQ58_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQ58_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.490e-21
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   22 VDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSVLNFLSDKALASSGFVWRRPVYAAEEAA 231
            VDKYDDPNT+VNKL+L+L  +GF L+FPA +LKQ YGEA C+ L F+ DKALA+ GF W +P Y  EE A
Sbjct:   92 VDKYDDPNTSVNKLILSLKILGFPLDFPAAKLKQGYGEAVCTTLEFICDKALAARGFAWAKPNYPKEEYA 161
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10765.709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK4_ECTSI3.260e-3893.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K333_9PHAE1.300e-2590.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
T0QS21_SAPDV1.910e-2267.14Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0XEZ7_9STRA2.470e-2265.71Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KRK3_9STRA2.560e-2265.71Aste57867_10634 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZM18_9STRA2.860e-2265.71Intraflagellar Transport Protein 57 n=1 Tax=Achlya... [more]
A0A8K1C707_PYTOL9.420e-2264.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4HCS8_9STRA1.330e-2164.29Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397AAJ3_9STRA2.560e-2164.29Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UQ58_9STRA3.490e-2162.86Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10765contigL-elsbetiae_contig10765:5207..6322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.9e-31
Seed eggNOG ortholog2880.D8LLK4
Preferred nameIFT57
KEGG koko:K04638
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001754,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0003341,GO:0003351,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006915,GO:0006919,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007635,GO:0008104,GO:0008150,GO:0008219,GO:0008285,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009987,GO:0010604,GO:0010646,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010970,GO:0012501,GO:0012505,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0019222,GO:0021915,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031323,GO:0031325,GO:0031503,GO:0032006,GO:0032268,GO:0032270,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0035050,GO:0035148,GO:0035239,GO:0035295,GO:0035720,GO:0035721,GO:0035735,GO:0035869,GO:0036064,GO:0036477,GO:0042073,GO:0042127,GO:0042221,GO:0042461,GO:0042462,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0044085,GO:0044093,GO:0044292,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0045862,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048592,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0060249,GO:0060255,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0080090,GO:0090596,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902531,GO:1905515,GO:2000116,GO:2001056
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG0972@1,KOG0972@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815293.823341-CDS-L-elsbetiae_contig10765:5206..53291622815293.823341-CDS-L-elsbetiae_contig10765:5206..5329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10765 5207..5329 +
1691682822.4429462-CDS-L-elsbetiae_contig10765:5206..53291691682822.4429462-CDS-L-elsbetiae_contig10765:5206..5329Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10765 5207..5329 +
1622815293.8351133-CDS-L-elsbetiae_contig10765:6136..63221622815293.8351133-CDS-L-elsbetiae_contig10765:6136..6322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10765 6137..6322 +
1691682822.4597635-CDS-L-elsbetiae_contig10765:6136..63221691682822.4597635-CDS-L-elsbetiae_contig10765:6136..6322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10765 6137..6322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10765.709.1prot_L-elsbetiae_contig10765.709.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10765 5207..6322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10765.709.1

>prot_L-elsbetiae_contig10765.709.1 ID=prot_L-elsbetiae_contig10765.709.1|Name=mRNA_L-elsbetiae_contig10765.709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
ESPRRLQVDKYDDPNTAVNKLMLALTGMGFDLNFPANRLKQAYGEAACSV
LNFLSDKALASSGFVWRRPVYAAEEAAEEAEPVDDCDMADIADEAEVEEE
DEE
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mRNA from alignment at L-elsbetiae_contig10765:5207..6322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10765.709.1 ID=mRNA_L-elsbetiae_contig10765.709.1|Name=mRNA_L-elsbetiae_contig10765.709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig10765:5207..6322+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTCTCCTCGCCGTCTGCAGGTGGACAAGTACGACGATCCAAACACGGC
AGTCAACAAGCTCATGCTGGCGCTTACCGGCATGGGTTTCGACCTAAACT
TCCCGGCAAACCGCCTCAAGCAGGTGGGACTTCCAAGAAAGAAAGTAACA
CACCAGCAGGTTACACATTGACGATAAACTTGTGGCTTGGGCAGTTACGG
CAATCTCCTCCTTTGTGGTGGAGATAAACAAACCGCACTTCACCAACAAG
CAGCGGCCAAAAATCAGCGAGTGTTTTGGTGGTGCTCGGTTGTGAAAGGA
ACCCTTAGTGATCCATCGACTTTAGAAAAGCGGAACGACTGCCCCCCCTT
CCGACAATAAAAAACCGACGAAACGCGATGCATTGCATTTTGAGGTCGAG
GCACAGCTCCGTCCCAACAAGCGAACGTGAAGACTGGATGGCCAAATGGC
TGCTGTTGAGAGGCTAGCACCAGGTTCAGGCAGGCATGCTCCATTTCCAT
CTCTTAACAGCCCCGCCGGAAAAGAGGGGATGCGCTAAAAACTGACCAGG
CGCAAGCAAGCAAGCAAAGCTAGCTAGGCGACAGAAAAGCCACGAGCGGC
CGACGCTCCAGAATTCCTCTGGAAATGTATGCGTGGCTTCACCGGCCGAA
AAACAACAAGTGCTCAAGGCATGCGATTCCCACCACCATCCCCGCCGCAA
CCAGACAGAACGTAAACCAAATAACGAGTGACGACAATCCCCACCCATCC
CTTCCCCCGCCCATCCCCCGCTCCCGCTCCCAACTCCAACCCGCGATGGT
ACGAACGAAAACTGTATTGAGTTGTTGATTCACCACGGATTCCCGTCTCT
TGTGTGGGGAGAGGGAGGTAATTGCTTTGAACATACCCTCATTTCTTTTT
CAAAAACGAAAAAAAAAACGAAAACGACAGGCGTACGGCGAGGCCGCGTG
CTCCGTGCTGAACTTCCTCTCCGACAAGGCGCTCGCGTCGTCGGGCTTCG
TGTGGCGGCGCCCGGTCTACGCGGCGGAGGAAGCGGCGGAGGAGGCCGAG
CCGGTGGACGACTGTGACATGGCCGACATCGCCGACGAGGCCGAGGTGGA
GGAGGAGGACGAGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10765:5207..6322+

>mRNA_L-elsbetiae_contig10765.709.1 ID=mRNA_L-elsbetiae_contig10765.709.1|Name=mRNA_L-elsbetiae_contig10765.709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig10765:5207..6322+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTCTCCTCGCCGTCTGCAGGTGGACAAGTACGACGATCCAAACACGGC
AGTCAACAAGCTCATGCTGGCGCTTACCGGCATGGGTTTCGACCTAAACT
TCCCGGCAAACCGCCTCAAGCAGGAGTCTCCTCGCCGTCTGCAGGTGGAC
AAGTACGACGATCCAAACACGGCAGTCAACAAGCTCATGCTGGCGCTTAC
CGGCATGGGTTTCGACCTAAACTTCCCGGCAAACCGCCTCAAGCAGGCGT
ACGGCGAGGCCGCGTGCTCCGTGCTGAACTTCCTCTCCGACAAGGCGCTC
GCGTCGTCGGGCTTCGTGTGGCGGCGCCCGGTCTACGCGGCGGAGGAAGC
GGCGGAGGAGGCCGAGCCGGTGGACGACTGTGACATGGCCGACATCGCCG
ACGAGGCCGAGGTGGAGGAGGAGGACGAGGAAGCGTACGGCGAGGCCGCG
TGCTCCGTGCTGAACTTCCTCTCCGACAAGGCGCTCGCGTCGTCGGGCTT
CGTGTGGCGGCGCCCGGTCTACGCGGCGGAGGAAGCGGCGGAGGAGGCCG
AGCCGGTGGACGACTGTGACATGGCCGACATCGCCGACGAGGCCGAGGTG
GAGGAGGAGGACGAGGAA
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