mRNA_L-elsbetiae_contig10761.706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10761.706.1
Unique NamemRNA_L-elsbetiae_contig10761.706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10761.706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10761contigL-elsbetiae_contig10761:5593..6128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10761.706.1prot_L-elsbetiae_contig10761.706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10761 5729..6082 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815293.605683-UTR-L-elsbetiae_contig10761:5592..57281622815293.605683-UTR-L-elsbetiae_contig10761:5592..5728Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10761 5593..5728 +
1691682822.3024147-UTR-L-elsbetiae_contig10761:5592..57281691682822.3024147-UTR-L-elsbetiae_contig10761:5592..5728Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10761 5593..5728 +
1622815293.6267853-UTR-L-elsbetiae_contig10761:6082..61281622815293.6267853-UTR-L-elsbetiae_contig10761:6082..6128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10761 6083..6128 +
1691682822.323683-UTR-L-elsbetiae_contig10761:6082..61281691682822.323683-UTR-L-elsbetiae_contig10761:6082..6128Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10761 6083..6128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815293.6166885-CDS-L-elsbetiae_contig10761:5728..60821622815293.6166885-CDS-L-elsbetiae_contig10761:5728..6082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10761 5729..6082 +
1691682822.3125474-CDS-L-elsbetiae_contig10761:5728..60821691682822.3125474-CDS-L-elsbetiae_contig10761:5728..6082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10761 5729..6082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10761.706.1

>prot_L-elsbetiae_contig10761.706.1 ID=prot_L-elsbetiae_contig10761.706.1|Name=mRNA_L-elsbetiae_contig10761.706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MNGTSPPLHDRVDDHSPRLSNRIIPDLGRTYITLDTQRLEDNTPCSGRNN
SRASCTRHNWYEVNSRAPLEHDGGGTRHCVIGVSPKHLINHTAINAAGAR
RGSPCKLRTLVGAMQYL*
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mRNA from alignment at L-elsbetiae_contig10761:5593..6128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10761.706.1 ID=mRNA_L-elsbetiae_contig10761.706.1|Name=mRNA_L-elsbetiae_contig10761.706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=536bp|location=Sequence derived from alignment at L-elsbetiae_contig10761:5593..6128+ (Laminarionema elsbetiae ELsaHSoW15)
CCCTTAACGACGCGCACACTAACAACGACTACCACACGCCCTTCCACATA
ATGTACAACACCCGGCTGCAGACTAAAAGAGCAACCCCAGAGAGAACTCT
CACCACCCACACGACGACTACTTCCCACGCGAACGAATGAACGGAACGTC
CCCGCCGCTGCACGACAGGGTTGATGATCATTCCCCCCGGCTTTCAAATC
GAATCATTCCAGACCTCGGACGCACATACATCACGCTGGATACGCAGCGT
CTCGAAGATAACACTCCTTGCTCTGGGCGCAACAACAGTAGAGCGTCGTG
TACCCGGCACAACTGGTACGAGGTCAACTCTCGAGCTCCTTTAGAACACG
ACGGTGGCGGGACCCGGCACTGCGTCATAGGTGTCAGCCCCAAACATCTG
ATCAACCACACAGCAATCAATGCGGCCGGAGCACGCCGGGGTTCGCCATG
CAAGCTCCGAACATTGGTCGGTGCAATGCAATATTTGTAGCGATTCCACC
AGTCAACGCTCTTGTCCCCATTCCGTGAGAGCTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10761:5593..6128+

>mRNA_L-elsbetiae_contig10761.706.1 ID=mRNA_L-elsbetiae_contig10761.706.1|Name=mRNA_L-elsbetiae_contig10761.706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig10761:5593..6128+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACGGAACGTCCCCGCCGCTGCACGACAGGGTTGATGATCATTCCCC
CCGGCTTTCAAATCGAATCATTCCAGACCTCGGACGCACATACATCACGC
TGGATACGCAGCGTCTCGAAGATAACACTCCTTGCTCTGGGCGCAACAAC
AGTAGAGCGTCGTGTACCCGGCACAACTGGTACGAGGTCAACTCTCGAGC
TCCTTTAGAACACGACGGTGGCGGGACCCGGCACTGCGTCATAGGTGTCA
GCCCCAAACATCTGATCAACCACACAGCAATCAATGCGGCCGGAGCACGC
CGGGGTTCGCCATGCAAGCTCCGAACATTGGTCGGTGCAATGCAATATTT
GTAGATGAACGGAACGTCCCCGCCGCTGCACGACAGGGTTGATGATCATT
CCCCCCGGCTTTCAAATCGAATCATTCCAGACCTCGGACGCACATACATC
ACGCTGGATACGCAGCGTCTCGAAGATAACACTCCTTGCTCTGGGCGCAA
CAACAGTAGAGCGTCGTGTACCCGGCACAACTGGTACGAGGTCAACTCTC
GAGCTCCTTTAGAACACGACGGTGGCGGGACCCGGCACTGCGTCATAGGT
GTCAGCCCCAAACATCTGATCAACCACACAGCAATCAATGCGGCCGGAGC
ACGCCGGGGTTCGCCATGCAAGCTCCGAACATTGGTCGGTGCAATGCAAT
ATTTGTAG
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