mRNA_L-elsbetiae_contig10750.697.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10750.697.1
Unique NamemRNA_L-elsbetiae_contig10750.697.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10750.697.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.570e-36
Identity = 81/121 (66.94%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:  286 SKQSAGGKRPRGEXXXXXXXXXTXXXXXXXAKAKTGSSKAKEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLALGVVFKINENDMVVSLPSSLTGVVRRKEVSDYFHQRAANSSSSGNTHPG 648
            S+ SA GKRPRGE         +       +K K   S A EVGSGMLVEHSGRAPRLEMVSFKKLNKGTLA+GVVFKINE+DMVVSLPSSLTGVVRR+EVSDYFHQ+AA++ ++G+   G
Sbjct:   76 SRPSAPGKRPRGESSA------SSPGGIGASKGKKRGSTASEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLAMGVVFKINEHDMVVSLPSSLTGVVRRQEVSDYFHQKAASAKNTGSNRAG 190
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BLAST of mRNA_L-elsbetiae_contig10750.697.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.780e-27
Identity = 79/173 (45.66%), Postives = 91/173 (52.60%), Query Frame = 1 
Query:  286 SKQSAGGKRPRGEXXXXXXXXXTXXXXXXXAKAKTGSSKAKEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLALGVVFK----------------------------------------------------INENDMVVSLPSSLTGVVRRKEVSDYFHQRAANSSSSGNTHPG 648
            S+ S  GKRPRGE         +       +K K   S   EVGSGMLVEHSGRAPRLEMVSFKKLNKGTLA+GVVFK                                                    INE+DMVVSLPSSLTGVVRR+EVSDYFHQ+AA++ ++G+   G
Sbjct:   74 SRPSVPGKRPRGESSA------SSPGSIGASKGKKRGSAGSEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLAMGVVFKVRGSANLFFECTFDPSLICPLATSFPXXXXXXXXXXXXXXXXFVLPPSLTCQINEHDMVVSLPSSLTGVVRRQEVSDYFHQKAASAKNTGSKRAG 240
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10750.697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRR9_ECTSI1.570e-3666.94rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A0A6H5LPP1_9PHAE6.780e-2745.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10750contigL-elsbetiae_contig10750:2931..4983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue3.2e-33
Seed eggNOG ortholog2880.D7FRR9
Preferred nameRRP5
KEGG koko:K14792,ko:K20353
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG0539@1,KOG1070@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04131
Exons4
Model size659
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10750.697.1prot_L-elsbetiae_contig10750.697.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10750 2931..4983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.9152455-CDS-L-elsbetiae_contig10750:2930..29851622815292.9152455-CDS-L-elsbetiae_contig10750:2930..2985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 2931..2985 +
1691682821.8452992-CDS-L-elsbetiae_contig10750:2930..29851691682821.8452992-CDS-L-elsbetiae_contig10750:2930..2985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 2931..2985 +
1622815292.9338722-CDS-L-elsbetiae_contig10750:3343..36751622815292.9338722-CDS-L-elsbetiae_contig10750:3343..3675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 3344..3675 +
1691682821.8592248-CDS-L-elsbetiae_contig10750:3343..36751691682821.8592248-CDS-L-elsbetiae_contig10750:3343..3675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 3344..3675 +
1622815292.944459-CDS-L-elsbetiae_contig10750:4110..42421622815292.944459-CDS-L-elsbetiae_contig10750:4110..4242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 4111..4242 +
1691682821.8692715-CDS-L-elsbetiae_contig10750:4110..42421691682821.8692715-CDS-L-elsbetiae_contig10750:4110..4242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 4111..4242 +
1622815292.9568534-CDS-L-elsbetiae_contig10750:4845..49831622815292.9568534-CDS-L-elsbetiae_contig10750:4845..4983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 4846..4983 +
1691682821.8803678-CDS-L-elsbetiae_contig10750:4845..49831691682821.8803678-CDS-L-elsbetiae_contig10750:4845..4983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10750 4846..4983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10750.697.1

>prot_L-elsbetiae_contig10750.697.1 ID=prot_L-elsbetiae_contig10750.697.1|Name=mRNA_L-elsbetiae_contig10750.697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
SPLRAGTEQAQGHQQREQAGTELQQEAHVNMTNLELFPRGKGTSEAAAST
PKASSSSSSSSRRDGKKRKAPAGSPGAGDRGGKEKEWLFGAGGDKSKQSA
GGKRPRGESSAAAAAAATGSSSAGGAKAKTGSSKAKEVGSGMLVEHSGRA
PRLEMVSFKKLNKGTLALGVVFKINENDMVVSLPSSLTGVVRRKEVSDYF
HQRAANSSSSGNTHPGKGG
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mRNA from alignment at L-elsbetiae_contig10750:2931..4983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10750.697.1 ID=mRNA_L-elsbetiae_contig10750.697.1|Name=mRNA_L-elsbetiae_contig10750.697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2053bp|location=Sequence derived from alignment at L-elsbetiae_contig10750:2931..4983+ (Laminarionema elsbetiae ELsaHSoW15)
TCACCGTTGCGTGCCGGCACGGAACAAGCACAGGGCCACCAGCAGCGTGA
ACAAGGTACAGTAAAATCGTTGGCTAGGGGGTTCAGACACGCAACAGCCG
GTTCAGTTCCGCTCATTTGGGGTGGTGGCTAGGTTTTGAGTGGTTAGCTA
TCTCTGAACCCTGTTACTGTTGTGTGTGAGGCTAGCGGGTGGTGCCTAGG
CATCAAGCCAGCTCACAAGACTTCTCTTCTTTAGGAGATGAGGCACGCAG
TTCCTTCTTGTTGTGACGGCGGTTGAAAACCTGCGGTTGTGTTTTCGATG
GTACATGCAGCAAATGCAACAAGAGACAAGAGCCAACACGAGGAGCTCGC
CCACCCACCCACTTTTTCTGAACACATGTTTCCCTCGCCAACCCTCTCGG
TCTTCCACCACAGCTGGCACCGAGCTACAGCAAGAGGCACACGTCAACAT
GACAAATCTGGAGCTGTTCCCTAGGGGCAAGGGCACGTCAGAAGCGGCGG
CAAGCACTCCGAAGGCTAGCAGCAGCAGCAGCAGCAGCAGTAGGCGAGAT
GGGAAGAAACGCAAGGCCCCGGCGGGATCGCCAGGGGCAGGAGACAGAGG
TGGCAAAGAGAAGGAGTGGTTGTTCGGCGCGGGCGGCGACAAGTCCAAGC
AATCCGCAGGCGGCAAGAGGCCTCGTGGAGAGAGCAGCGCAGCAGCAGCA
GCAGCAGCAACTGGGTCGAGTTCTGCTGGTGGTGCAAAAGCAAAGGTGAG
CACACGGGACCAAATAATCATGGGTCGTGCTTGGGCTGTGAAGCTACACC
CACTGCTGTGAAGACTACCTTACAAGGCTTGTTTTATTTTAGGTCCACGT
TGTATATTGTGCGAACATGTGTACAAAGCTTTAATGCGTGCACATGCAAA
CCTCATCACTTGAGTCGGTGTGTGTTCCCTTGATGTTCCCACGTGAGTGT
CCACCATTTCCTGGCCCATGCCCAACCCGGACTGCCATACAGCCCGGCCA
CAAACACGCCTACATACAAACCGCAGAAATATTCCCCTATACACATCAAC
CGAGTACTTACCAACGGGTTATGCTTATGCATGTGTAGCATCTTCACGAG
CCATGTACGTATGCACACCTTTTTTGTGATGTATGTACCTATCTTTGGCG
CTTCTCTTGTCTTGGTTGATTGGTTCCCAGACTGGTTCATCAAAGGCGAA
AGAGGTGGGGTCCGGGATGCTCGTGGAACATTCCGGGAGAGCTCCCCGGC
TGGAGATGGTCTCCTTCAAGAAGCTCAACAAAGGCACCCTCGCGCTGGGC
GTCGTCTTCAAGGTCAGTGCAGCCGCTGTACAGTGAGGTATTTTCGTCTT
ACGTCGGGGTTGTTGCTTTCGTATTTCGGGGTTTCCCCCTATTTTCGTTC
ACGATTGAAAAGGTCGAGTCCGCTCACATTTCAATGTAGTCGGTAAATTA
CATCGTCAGTTTTTGACGTGCTGTATTCACTGGGATTGAAGAAGCTTGAA
GGGAATTTGGTTGGTGCTACATACGACATGCAAAGAAACCCGCGCAAGTT
ACTCCTGATGGACACGTAAATATCGTGTTTTTTTTCGTGATTTGACGTTC
GCTCGCTCGCATACTTTTTCGGCAGCTTTTTTCCGAACCCATATAGAAAT
ACAAATGTGATTTCAGGGTAAGGGTAACAAGGTCTAAACCCGTGTCCGAC
TTGACGTGCTCATGTGCATACATGTTGCGTGGATTTAGGGGTGCGTCTTT
GGCCGTCTGTATCTTTGCCAGGTGTATCTGCTTGTGTCCTTTCCGTATCT
TCCGATGGCTCCAGCAGCACGTTTGTGACCAACGGGCCGTGACTTGCTAG
ATTTTCGAAAGTATAAATCTCGATTATACGAGCTAATGCGAGGAAACAAT
AATGCTTGATTTCAGATCAACGAGAACGACATGGTGGTTTCGCTGCCTAG
CAGCCTCACGGGCGTCGTCCGTCGAAAAGAGGTCAGCGACTACTTTCACC
AAAGGGCCGCGAACAGCAGCAGCAGCGGCAACACGCACCCCGGCAAAGGT
GGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10750:2931..4983+

>mRNA_L-elsbetiae_contig10750.697.1 ID=mRNA_L-elsbetiae_contig10750.697.1|Name=mRNA_L-elsbetiae_contig10750.697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig10750:2931..4983+ (Laminarionema elsbetiae ELsaHSoW15)
TCACCGTTGCGTGCCGGCACGGAACAAGCACAGGGCCACCAGCAGCGTGA
ACAAGTCACCGTTGCGTGCCGGCACGGAACAAGCACAGGGCCACCAGCAG
CGTGAACAAGCTGGCACCGAGCTACAGCAAGAGGCACACGTCAACATGAC
AAATCTGGAGCTGTTCCCTAGGGGCAAGGGCACGTCAGAAGCGGCGGCAA
GCACTCCGAAGGCTAGCAGCAGCAGCAGCAGCAGCAGTAGGCGAGATGGG
AAGAAACGCAAGGCCCCGGCGGGATCGCCAGGGGCAGGAGACAGAGGTGG
CAAAGAGAAGGAGTGGTTGTTCGGCGCGGGCGGCGACAAGTCCAAGCAAT
CCGCAGGCGGCAAGAGGCCTCGTGGAGAGAGCAGCGCAGCAGCAGCAGCA
GCAGCAACTGGGTCGAGTTCTGCTGGTGGTGCAAAAGCAAAGCTGGCACC
GAGCTACAGCAAGAGGCACACGTCAACATGACAAATCTGGAGCTGTTCCC
TAGGGGCAAGGGCACGTCAGAAGCGGCGGCAAGCACTCCGAAGGCTAGCA
GCAGCAGCAGCAGCAGCAGTAGGCGAGATGGGAAGAAACGCAAGGCCCCG
GCGGGATCGCCAGGGGCAGGAGACAGAGGTGGCAAAGAGAAGGAGTGGTT
GTTCGGCGCGGGCGGCGACAAGTCCAAGCAATCCGCAGGCGGCAAGAGGC
CTCGTGGAGAGAGCAGCGCAGCAGCAGCAGCAGCAGCAACTGGGTCGAGT
TCTGCTGGTGGTGCAAAAGCAAAGACTGGTTCATCAAAGGCGAAAGAGGT
GGGGTCCGGGATGCTCGTGGAACATTCCGGGAGAGCTCCCCGGCTGGAGA
TGGTCTCCTTCAAGAAGCTCAACAAAGGCACCCTCGCGCTGGGCGTCGTC
TTCAAGACTGGTTCATCAAAGGCGAAAGAGGTGGGGTCCGGGATGCTCGT
GGAACATTCCGGGAGAGCTCCCCGGCTGGAGATGGTCTCCTTCAAGAAGC
TCAACAAAGGCACCCTCGCGCTGGGCGTCGTCTTCAAGATCAACGAGAAC
GACATGGTGGTTTCGCTGCCTAGCAGCCTCACGGGCGTCGTCCGTCGAAA
AGAGGTCAGCGACTACTTTCACCAAAGGGCCGCGAACAGCAGCAGCAGCG
GCAACACGCACCCCGGCAAAGGTGGCATCAACGAGAACGACATGGTGGTT
TCGCTGCCTAGCAGCCTCACGGGCGTCGTCCGTCGAAAAGAGGTCAGCGA
CTACTTTCACCAAAGGGCCGCGAACAGCAGCAGCAGCGGCAACACGCACC
CCGGCAAAGGTGGC
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