mRNA_L-elsbetiae_contig10748.695.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10748.695.1
Unique NamemRNA_L-elsbetiae_contig10748.695.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10748.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10748contigL-elsbetiae_contig10748:755..1671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size715
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10748.695.1prot_L-elsbetiae_contig10748.695.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10748 1006..1567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.5426006-UTR-L-elsbetiae_contig10748:754..10051622815292.5426006-UTR-L-elsbetiae_contig10748:754..1005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10748 755..1005 -
1691682821.5772974-UTR-L-elsbetiae_contig10748:754..10051691682821.5772974-UTR-L-elsbetiae_contig10748:754..1005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10748 755..1005 -
1622815292.5706952-UTR-L-elsbetiae_contig10748:1567..16711622815292.5706952-UTR-L-elsbetiae_contig10748:1567..1671Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10748 1568..1671 -
1691682821.6063561-UTR-L-elsbetiae_contig10748:1567..16711691682821.6063561-UTR-L-elsbetiae_contig10748:1567..1671Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10748 1568..1671 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.5522132-CDS-L-elsbetiae_contig10748:1005..11041622815292.5522132-CDS-L-elsbetiae_contig10748:1005..1104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10748 1006..1104 -
1691682821.5859745-CDS-L-elsbetiae_contig10748:1005..11041691682821.5859745-CDS-L-elsbetiae_contig10748:1005..1104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10748 1006..1104 -
1622815292.5607133-CDS-L-elsbetiae_contig10748:1306..15671622815292.5607133-CDS-L-elsbetiae_contig10748:1306..1567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10748 1307..1567 -
1691682821.598282-CDS-L-elsbetiae_contig10748:1306..15671691682821.598282-CDS-L-elsbetiae_contig10748:1306..1567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10748 1307..1567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10748.695.1

>prot_L-elsbetiae_contig10748.695.1 ID=prot_L-elsbetiae_contig10748.695.1|Name=mRNA_L-elsbetiae_contig10748.695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MTNLESKECTHKGCHITASFGFRGRAFCRAHAEDGMSGPRGRVLGSPASG
NVTNNPKPVRHAGASKTVSGAATAWLSAGGPLHECDKAPVARQPVLTPTT
DQFVVPPTVTEVGVPWESQ*
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mRNA from alignment at L-elsbetiae_contig10748:755..1671-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10748.695.1 ID=mRNA_L-elsbetiae_contig10748.695.1|Name=mRNA_L-elsbetiae_contig10748.695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=917bp|location=Sequence derived from alignment at L-elsbetiae_contig10748:755..1671- (Laminarionema elsbetiae ELsaHSoW15)
GGGGAAAAGCGATCTGTCAGGGACATGGTTGCAGCAAACGCCCCGTGTAT
GGCTTTAGAGCGGACGGGAAGAAGGTAGCGTGTCTGCGACACGCCCACGA
CGAGATGACAAACCTCGAATCCAAGGAGTGTACGCATAAAGGATGTCACA
TCACCGCCAGCTTTGGATTTAGAGGTCGTGCTTTCTGCAGGGCCCACGCT
GAGGATGGTATGTCTGGTCCTCGAGGGCGGGTGCTCGGCTCTCCCGCGTC
GGGGAATGTGACCAACAATCCCAAACCGGTACGGCACGCGGGGGCCTCGA
AGACAGTGAGCGGAGCGGCAACGGCATGGCTTTCAGCTGGCGGACCACTG
CACGAGTGTGACAAGGTGCGTATGATAGTGAAGCATGTCGGGATACATAG
ACGAGCAAAAAAATAGCAGAGAGCCATGGCCACCATTTTATGGATGTTGC
CGGCCTAAACCCTCTCTCGGACATGCATTTTTTGCCTGGCGCAGATGCAA
CAGGAACAAAAAATTGCCCCCGCAACACTGGTATAAAAAATTGCCCAATC
CTCCACATGCAACGCAGGCGCCGGTGGCACGCCAACCTGTTTTGACGCCC
ACGACGGACCAGTTTGTAGTGCCGCCTACGGTGACTGAGGTGGGTGTCCC
TTGGGAATCACAGTAGTTAAAAAAACACCGCGCGACTGGTTACAGACTGG
AAACTTTGCCCGTAGTTTTCTTGTGTAGTGTTTGACTGAGCTAAACAGAA
AGTTACACCCCCCTCCGCTCACGTAGCCCCCCTGAGACTACCACGGTACA
TCACGACGAGCGATTTGCAGCGAATTCTGTCCCCTAGATCGCGAACCCCA
CGCAATCGTTTCCTCTGCAGTCACAAGAGGACGCGAACGGAGCCGATGAG
CGAGCCATGTTGGAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10748:755..1671-

>mRNA_L-elsbetiae_contig10748.695.1 ID=mRNA_L-elsbetiae_contig10748.695.1|Name=mRNA_L-elsbetiae_contig10748.695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig10748:755..1671- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAACCTCGAATCCAAGGAGTGTACGCATAAAGGATGTCACATCAC
CGCCAGCTTTGGATTTAGAGGTCGTGCTTTCTGCAGGGCCCACGCTGAGG
ATGGTATGTCTGGTCCTCGAGGGCGGGTGCTCGGCTCTCCCGCGTCGGGG
AATGTGACCAACAATCCCAAACCGGTACGGCACGCGGGGGCCTCGAAGAC
AGTGAGCGGAGCGGCAACGGCATGGCTTTCAGCTGGCGGACCACTGCACG
AGTGTGACAAGATGACAAACCTCGAATCCAAGGAGTGTACGCATAAAGGA
TGTCACATCACCGCCAGCTTTGGATTTAGAGGTCGTGCTTTCTGCAGGGC
CCACGCTGAGGATGGTATGTCTGGTCCTCGAGGGCGGGTGCTCGGCTCTC
CCGCGTCGGGGAATGTGACCAACAATCCCAAACCGGTACGGCACGCGGGG
GCCTCGAAGACAGTGAGCGGAGCGGCAACGGCATGGCTTTCAGCTGGCGG
ACCACTGCACGAGTGTGACAAGGCGCCGGTGGCACGCCAACCTGTTTTGA
CGCCCACGACGGACCAGTTTGTAGTGCCGCCTACGGTGACTGAGGTGGGT
GTCCCTTGGGAATCACAGTAGGCGCCGGTGGCACGCCAACCTGTTTTGAC
GCCCACGACGGACCAGTTTGTAGTGCCGCCTACGGTGACTGAGGTGGGTG
TCCCTTGGGAATCACAGTAG
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