mRNA_L-elsbetiae_contig10742.691.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10742.691.1
Unique NamemRNA_L-elsbetiae_contig10742.691.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10742.691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10742contigL-elsbetiae_contig10742:2253..2848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size597
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.3286836-UTR-L-elsbetiae_contig10742:2252..25481622815292.3286836-UTR-L-elsbetiae_contig10742:2252..2548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10742 2253..2548 +
1691682821.4503534-UTR-L-elsbetiae_contig10742:2252..25481691682821.4503534-UTR-L-elsbetiae_contig10742:2252..2548Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10742 2253..2548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815292.342118-CDS-L-elsbetiae_contig10742:2548..28481622815292.342118-CDS-L-elsbetiae_contig10742:2548..2848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10742 2549..2848 +
1691682821.4593725-CDS-L-elsbetiae_contig10742:2548..28481691682821.4593725-CDS-L-elsbetiae_contig10742:2548..2848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10742 2549..2848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10742.691.1prot_L-elsbetiae_contig10742.691.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10742 2549..2848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10742.691.1

>prot_L-elsbetiae_contig10742.691.1 ID=prot_L-elsbetiae_contig10742.691.1|Name=mRNA_L-elsbetiae_contig10742.691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MGSVWCRSRFRGVFEPFSYSCGAGQLLPSNRSEGANTHVASSWCPLLISQ
MKWRLPPTLALYQRPRRFLFRFDFLTGGGVISVVVFAIGGRPRGAYVKSS
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mRNA from alignment at L-elsbetiae_contig10742:2253..2848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10742.691.1 ID=mRNA_L-elsbetiae_contig10742.691.1|Name=mRNA_L-elsbetiae_contig10742.691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=596bp|location=Sequence derived from alignment at L-elsbetiae_contig10742:2253..2848+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTTTCGCATTGGCCACACAATCCACCAAAAGAAACTCTGCTTGGCAT
ACACATGTGACGCTCCAAAACATAGCATCAGGAGGTGAATCATCGGTGTG
TGTGTGTGTTTACGTTTTTCGGGCCACTTGCACCGTTTCTCACTTAGCAT
TTCTCTCCTGCGAAGGGTTTCAGTGCGATGAAGGATAAAACCATTTCTCA
TGAACTTTTCTAATTCCATAAGAACTGTCCAGAGCTACAAACTGCTCTTG
TAGGGCCGCAATTCAAGAGGATGGGTCTGTGGCAGTGAGCACAGCAATGG
GAAGTGTCTGGTGTCGGTCTAGATTTCGCGGGGTGTTCGAGCCGTTTAGC
TACTCCTGCGGTGCCGGACAACTCCTCCCCAGCAACCGATCTGAGGGAGC
CAACACGCACGTCGCATCTTCATGGTGTCCTCTACTGATATCACAGATGA
AGTGGAGGCTCCCCCCAACCCTCGCTTTGTATCAACGCCCGCGGCGTTTC
CTGTTTCGCTTTGACTTTTTAACTGGGGGGGGGGTTATCTCGGTTGTAGT
GTTTGCGATTGGAGGTAGACCACGTGGTGCGTATGTAAAGAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10742:2253..2848+

>mRNA_L-elsbetiae_contig10742.691.1 ID=mRNA_L-elsbetiae_contig10742.691.1|Name=mRNA_L-elsbetiae_contig10742.691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig10742:2253..2848+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAAGTGTCTGGTGTCGGTCTAGATTTCGCGGGGTGTTCGAGCCGTT
TAGCTACTCCTGCGGTGCCGGACAACTCCTCCCCAGCAACCGATCTGAGG
GAGCCAACACGCACGTCGCATCTTCATGGTGTCCTCTACTGATATCACAG
ATGAAGTGGAGGCTCCCCCCAACCCTCGCTTTGTATCAACGCCCGCGGCG
TTTCCTGTTTCGCTTTGACTTTTTAACTGGGGGGGGGGTTATCTCGGTTG
TAGTGTTTGCGATTGGAGGTAGACCACGTGGTGCGTATGTAAAGAGCAGC
ATGGGAAGTGTCTGGTGTCGGTCTAGATTTCGCGGGGTGTTCGAGCCGTT
TAGCTACTCCTGCGGTGCCGGACAACTCCTCCCCAGCAACCGATCTGAGG
GAGCCAACACGCACGTCGCATCTTCATGGTGTCCTCTACTGATATCACAG
ATGAAGTGGAGGCTCCCCCCAACCCTCGCTTTGTATCAACGCCCGCGGCG
TTTCCTGTTTCGCTTTGACTTTTTAACTGGGGGGGGGGTTATCTCGGTTG
TAGTGTTTGCGATTGGAGGTAGACCACGTGGTGCGTATGTAAAGAGCAGC
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