mRNA_L-elsbetiae_contig10734.683.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10734.683.1
Unique NamemRNA_L-elsbetiae_contig10734.683.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: D7FWI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI0_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 5.800e-19
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFASSWIEGRPDVP 123
            QLYGMKWARLMFGREFRVE VL+LWDHIFASSWIEG+PDVP
Sbjct:  140 QLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVP 180
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: A0A6H5KGW7_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.250e-18
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFASSWIEGRPDVP 123
            +LYGMKWARLMFGREFRVE VL+LWDHIFASSWIEG+PDVP
Sbjct:  358 KLYGMKWARLMFGREFRVEGVLVLWDHIFASSWIEGQPDVP 398
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: A0A397GIP1_9GLOM (Rab-GAP TBC domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GIP1_9GLOM)

HSP 1 Score: 50.1 bits (118), Expect = 6.810e-6
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFA 90
            QLYG++W RL+FGREF +E VL+LWD +FA
Sbjct:  292 QLYGIRWVRLLFGREFTLEKVLILWDGMFA 321
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: A0A8H7PNJ4_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PNJ4_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 6.810e-6
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFA 90
            QLYG++W RL+FGREF +E+VL LWD IFA
Sbjct:  299 QLYGIRWIRLLFGREFSIENVLELWDAIFA 328
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: B3RPK0_TRIAD (Rab-GAP TBC domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RPK0_TRIAD)

HSP 1 Score: 49.7 bits (117), Expect = 9.320e-6
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFASSWIEGRP 114
            Q+YG++W R+MFGREF ++ VL+LWD IFA    +G+P
Sbjct:  284 QIYGIRWIRVMFGREFPMDDVLVLWDAIFA----DGKP 317
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: A0A1Y2FMD8_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2FMD8_9FUNG)

HSP 1 Score: 49.3 bits (116), Expect = 1.270e-5
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFA 90
            QLYG++W RL+F REF+++ VLLLWD IFA
Sbjct:  270 QLYGLRWLRLLFSREFQMDEVLLLWDGIFA 299
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: F7GB90_ORNAN (TBC1 domain family member 5 n=5 Tax=Monotremata TaxID=9255 RepID=F7GB90_ORNAN)

HSP 1 Score: 49.3 bits (116), Expect = 1.270e-5
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFASSWIEGRPD 117
            Q+YG++W RL+FGREF ++ +L++WD +FA S   G  D
Sbjct:  327 QIYGLRWVRLLFGREFPLQDLLIIWDALFADSITLGLVD 365
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: V4BMD9_LOTGI (Rab-GAP TBC domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BMD9_LOTGI)

HSP 1 Score: 49.3 bits (116), Expect = 1.280e-5
Identity = 19/32 (59.38%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFASS 96
            Q+YG++W RL+FGREF ++ +L+LWD IFA S
Sbjct:  279 QIYGIRWVRLLFGREFPMQDLLMLWDAIFADS 310
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: A0A2T7PV67_POMCA (Rab-GAP TBC domain-containing protein n=10 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PV67_POMCA)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 19/32 (59.38%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFASS 96
            Q+YG++W RL+FGREF ++ +L+LWD IFA S
Sbjct:  360 QIYGIRWLRLLFGREFPMQDLLMLWDAIFADS 391
[Close]
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Match: A0A507CQI9_9FUNG (Rab-GAP TBC domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CQI9_9FUNG)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 QLYGMKWARLMFGREFRVESVLLLWDHIFASS 96
            QLYG++W RL+FGREF +  +L+LWD IFA S
Sbjct:  263 QLYGIRWLRLLFGREFPLHELLILWDGIFADS 294
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10734.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI0_ECTSI5.800e-1992.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGW7_9PHAE2.250e-1890.24Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A397GIP1_9GLOM6.810e-666.67Rab-GAP TBC domain-containing protein n=1 Tax=Dive... [more]
A0A8H7PNJ4_9FUNG6.810e-670.00Rab-GAP TBC domain-containing protein n=1 Tax=Umbe... [more]
B3RPK0_TRIAD9.320e-655.26Rab-GAP TBC domain-containing protein n=2 Tax=Tric... [more]
A0A1Y2FMD8_9FUNG1.270e-566.67Rab-GAP TBC domain-containing protein n=1 Tax=Neoc... [more]
F7GB90_ORNAN1.270e-548.72TBC1 domain family member 5 n=5 Tax=Monotremata Ta... [more]
V4BMD9_LOTGI1.280e-559.38Rab-GAP TBC domain-containing protein n=1 Tax=Lott... [more]
A0A2T7PV67_POMCA1.740e-559.38Rab-GAP TBC domain-containing protein n=10 Tax=Pom... [more]
A0A507CQI9_9FUNG1.740e-562.50Rab-GAP TBC domain-containing protein n=1 Tax=Sync... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10734contigL-elsbetiae_contig10734:648..770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog2880.D7FWI0
Preferred nameTBC1D5
KEGG rclassRC00002,RC00078
KEGG koko:K01765,ko:K03843,ko:K18081,ko:K18469
KEGG ReactionR03428,R03429,R05973,R06238
KEGG Pathwayko00510,ko00513,ko00562,ko01100,ko04070,map00510,map00513,map00562,map01100,map04070
KEGG ModuleM00055,M00132
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002090,GO:0002092,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005776,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006914,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007193,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009410,GO:0009605,GO:0009893,GO:0009987,GO:0009991,GO:0010008,GO:0010033,GO:0010243,GO:0010604,GO:0012505,GO:0014070,GO:0014074,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016236,GO:0016482,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0023052,GO:0030100,GO:0030234,GO:0030695,GO:0030904,GO:0031000,GO:0031090,GO:0031156,GO:0031267,GO:0031323,GO:0031325,GO:0031338,GO:0031410,GO:0031667,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035612,GO:0036270,GO:0042147,GO:0042221,GO:0042493,GO:0042594,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043547,GO:0043900,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045807,GO:0046907,GO:0048259,GO:0048260,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060589,GO:0060627,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0090630,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:1901698,GO:1903664,GO:1903665,GO:1905394
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1091@2759
EC2.4.1.132,2.4.1.257,2.7.1.159,3.1.3.64,3.1.3.95
COG Functional cat.H
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko01009,ko04131
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-26_006540.1
Exons1
Model size123
Cds size111
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.3201525-CDS-L-elsbetiae_contig10734:647..7581622815291.3201525-CDS-L-elsbetiae_contig10734:647..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10734 648..758 -
1691682820.8040688-CDS-L-elsbetiae_contig10734:647..7581691682820.8040688-CDS-L-elsbetiae_contig10734:647..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10734 648..758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.3566859-UTR-L-elsbetiae_contig10734:758..7701622815291.3566859-UTR-L-elsbetiae_contig10734:758..770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10734 759..770 -
1691682820.8191557-UTR-L-elsbetiae_contig10734:758..7701691682820.8191557-UTR-L-elsbetiae_contig10734:758..770Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10734 759..770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10734.683.1prot_L-elsbetiae_contig10734.683.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10734 648..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10734.683.1

>prot_L-elsbetiae_contig10734.683.1 ID=prot_L-elsbetiae_contig10734.683.1|Name=mRNA_L-elsbetiae_contig10734.683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
MKWARLMFGREFRVESVLLLWDHIFASSWIEGRPDVP
back to top

mRNA from alignment at L-elsbetiae_contig10734:648..770-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10734.683.1 ID=mRNA_L-elsbetiae_contig10734.683.1|Name=mRNA_L-elsbetiae_contig10734.683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=123bp|location=Sequence derived from alignment at L-elsbetiae_contig10734:648..770- (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGTACGGCATGAAGTGGGCGCGGCTCATGTTCGGCAGGGAGTTCCG
CGTCGAGTCCGTCTTGCTGCTCTGGGATCACATCTTCGCGTCCTCGTGGA
TCGAGGGCCGGCCCGACGTGCCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10734:648..770-

>mRNA_L-elsbetiae_contig10734.683.1 ID=mRNA_L-elsbetiae_contig10734.683.1|Name=mRNA_L-elsbetiae_contig10734.683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=222bp|location=Sequence derived from alignment at L-elsbetiae_contig10734:648..770- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTGGGCGCGGCTCATGTTCGGCAGGGAGTTCCGCGTCGAGTCCGT
CTTGCTGCTCTGGGATCACATCTTCGCGTCCTCGTGGATCGAGGGCCGGC
CCGACGTGCCGATGAAGTGGGCGCGGCTCATGTTCGGCAGGGAGTTCCGC
GTCGAGTCCGTCTTGCTGCTCTGGGATCACATCTTCGCGTCCTCGTGGAT
CGAGGGCCGGCCCGACGTGCCG
back to top