mRNA_L-elsbetiae_contig10727.680.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10727.680.1
Unique NamemRNA_L-elsbetiae_contig10727.680.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10727.680.1 vs. uniprot
Match: A0A6H5K1Z7_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z7_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 9.050e-25
Identity = 54/84 (64.29%), Postives = 61/84 (72.62%), Query Frame = 2 
Query:   68 ESEDVDFPPRRLLGPASDSTAQPTFAAXXXXXXXXXXXXXXXXXXXLQQDIHPVVARRGLDFLWYLCKTSLRVTHDMLTLGPAG 319
            ESE+VDFPPRRLLGPASDSTAQPTFAA                     Q++HP+VARRGLDFLWYLCK S RVT+D+LT+GPAG
Sbjct:   55 ESEEVDFPPRRLLGPASDSTAQPTFAAARTGGEGDDDDGW--------QEVHPLVARRGLDFLWYLCKNSFRVTYDVLTVGPAG 130
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10727.680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1Z7_9PHAE9.050e-2564.29HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10727contigL-elsbetiae_contig10727:4729..5095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.182577-CDS-L-elsbetiae_contig10727:4728..50941622815291.182577-CDS-L-elsbetiae_contig10727:4728..5094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 4729..5094 +
1691682820.7461734-CDS-L-elsbetiae_contig10727:4728..50941691682820.7461734-CDS-L-elsbetiae_contig10727:4728..5094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 4729..5094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10727.680.1prot_L-elsbetiae_contig10727.680.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10727 4729..5094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10727.680.1

>prot_L-elsbetiae_contig10727.680.1 ID=prot_L-elsbetiae_contig10727.680.1|Name=mRNA_L-elsbetiae_contig10727.680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
WRRWWWRRPGRSGGGGRARPRSRVGGRGLPAEEASRTRFGQHRAADFCGR
GKRRWRRRRWWCGGGRRGAAARYSPGRGQAGARLPVVPLQDEPASDARHA
YPGTGGGRRVWRGSIPGCRGKG
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mRNA from alignment at L-elsbetiae_contig10727:4729..5095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10727.680.1 ID=mRNA_L-elsbetiae_contig10727.680.1|Name=mRNA_L-elsbetiae_contig10727.680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=367bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:4729..5095+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCGGCGGTGGTGGTGGCGTAGACCCGGACGCAGCGGCGGCGGCGGGCG
CGCTAGGCCTAGGTCTCGAGTCGGAGGACGTGGACTTCCCGCCGAGGAGG
CTTCTCGGACCCGCTTCGGACAGCACCGCGCAGCCGACTTTTGCGGCCGC
GGCAAGAGGCGGTGGCGGCGGCGGCGGTGGTGGTGCGGCGGGGGACGAAG
AGGAGCTGCAGCAAGATATTCACCCGGTCGTGGCCAGGCGGGGGCTCGAC
TTCCTGTGGTACCTCTGCAAGACGAGCCTGCGAGTGACGCACGACATGCT
TACCCTGGGACCGGCGGGGGAAGAAGAGTGTGGCGAGGTTCCATCCCGGG
CTGCCGGGGGAAAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10727:4729..5095+

>mRNA_L-elsbetiae_contig10727.680.1 ID=mRNA_L-elsbetiae_contig10727.680.1|Name=mRNA_L-elsbetiae_contig10727.680.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:4729..5095+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCGGCGGTGGTGGTGGCGTAGACCCGGACGCAGCGGCGGCGGCGGGCG
CGCTAGGCCTAGGTCTCGAGTCGGAGGACGTGGACTTCCCGCCGAGGAGG
CTTCTCGGACCCGCTTCGGACAGCACCGCGCAGCCGACTTTTGCGGCCGC
GGCAAGAGGCGGTGGCGGCGGCGGCGGTGGTGGTGCGGCGGGGGACGAAG
AGGAGCTGCAGCAAGATATTCACCCGGTCGTGGCCAGGCGGGGGCTCGAC
TTCCTGTGGTACCTCTGCAAGACGAGCCTGCGAGTGACGCACGACATGCT
TACCCTGGGACCGGCGGGGGAAGAAGAGTGTGGCGAGGTTCCATCCCGGG
CTGCCGGGGGAAAGGGTGGCGGCGGTGGTGGTGGCGTAGACCCGGACGCA
GCGGCGGCGGCGGGCGCGCTAGGCCTAGGTCTCGAGTCGGAGGACGTGGA
CTTCCCGCCGAGGAGGCTTCTCGGACCCGCTTCGGACAGCACCGCGCAGC
CGACTTTTGCGGCCGCGGCAAGAGGCGGTGGCGGCGGCGGCGGTGGTGGT
GCGGCGGGGGACGAAGAGGAGCTGCAGCAAGATATTCACCCGGTCGTGGC
CAGGCGGGGGCTCGACTTCCTGTGGTACCTCTGCAAGACGAGCCTGCGAG
TGACGCACGACATGCTTACCCTGGGACCGGCGGGGGAAGAAGAGTGTGGC
GAGGTTCCATCCCGGGCTGCCGGGGGAAAGGG
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