mRNA_L-elsbetiae_contig10722.672.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10722.672.1
Unique NamemRNA_L-elsbetiae_contig10722.672.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10722.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10722contigL-elsbetiae_contig10722:2655..4258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size347
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10722.672.1prot_L-elsbetiae_contig10722.672.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10722 2724..4258 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.7799098-UTR-L-elsbetiae_contig10722:2654..27231622815290.7799098-UTR-L-elsbetiae_contig10722:2654..2723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10722 2655..2723 -
1691682820.482319-UTR-L-elsbetiae_contig10722:2654..27231691682820.482319-UTR-L-elsbetiae_contig10722:2654..2723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10722 2655..2723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.7917833-CDS-L-elsbetiae_contig10722:2723..27441622815290.7917833-CDS-L-elsbetiae_contig10722:2723..2744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10722 2724..2744 -
1691682820.4922357-CDS-L-elsbetiae_contig10722:2723..27441691682820.4922357-CDS-L-elsbetiae_contig10722:2723..2744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10722 2724..2744 -
1622815290.8018541-CDS-L-elsbetiae_contig10722:3273..33711622815290.8018541-CDS-L-elsbetiae_contig10722:3273..3371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10722 3274..3371 -
1691682820.502004-CDS-L-elsbetiae_contig10722:3273..33711691682820.502004-CDS-L-elsbetiae_contig10722:3273..3371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10722 3274..3371 -
1622815290.8152237-CDS-L-elsbetiae_contig10722:4101..42581622815290.8152237-CDS-L-elsbetiae_contig10722:4101..4258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10722 4102..4258 -
1691682820.510585-CDS-L-elsbetiae_contig10722:4101..42581691682820.510585-CDS-L-elsbetiae_contig10722:4101..4258Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10722 4102..4258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10722.672.1

>prot_L-elsbetiae_contig10722.672.1 ID=prot_L-elsbetiae_contig10722.672.1|Name=mRNA_L-elsbetiae_contig10722.672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
SKVDPNEDPPEGAAGAAGGVPPFGQAVPFSVPESSVKPEVGYSFPSKGKG
TGGVGGPSEDAAGRHPRGRREAAEEGREEGQRRAKRSRRGQ*
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mRNA from alignment at L-elsbetiae_contig10722:2655..4258-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10722.672.1 ID=mRNA_L-elsbetiae_contig10722.672.1|Name=mRNA_L-elsbetiae_contig10722.672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1604bp|location=Sequence derived from alignment at L-elsbetiae_contig10722:2655..4258- (Laminarionema elsbetiae ELsaHSoW15)
TCGAAAGTGGACCCCAACGAAGACCCCCCCGAAGGAGCAGCGGGAGCAGC
AGGAGGAGTGCCCCCCTTCGGGCAAGCTGTTCCATTCTCGGTGCCAGAGT
CATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCATCAAAGGGCAAGGGG
ACTGGAGGTGGGCAAGCACGTGTTTTCCTTTTCCTTGCTGGAAGTTCGGT
TGGTGTGGTCTGCAGCCTTCACTGCCGGCAGGAACGTTGGTCTAGACCTG
GCACACACTTTTGATCTAGAACCGTGGGCACACCCCGGCATCCTCTTGCA
TGATTTTTGTCGTTGGGGAAATTGCCATGTCGCGTTCAACTTGTGTATCT
GTTCTTGTCCCGTTTAATGTCGTATTGACTTCCAACTTCCTGAGGCTCGT
TCGAGTCTCACATGATGCGAAATTGTACCCCGTCCTTCCTCCCGACGGTT
TACGACCGAACATGTTGGTGCCACATATCCTATGCACATCTCTTCATTGC
TGCTGCCCGAGTCGTACAGGCACTCTCGGAACGTTTTCGTTCTGTGTGCA
CGTAGAGAAGTCCAGACATCCGAGTACGACCCGGCTTGTACCCACAGTAA
AACTAGCTAATTCATGGTACTTAGTTCGGTGCTGATTTCTCTAGCGCTCG
GGGTTCTTCCACTCCTCCGTGCTGTTTGCCGCTTTGCTTGTGTGTCTAGC
GTCACGACACCTTGACGACAGCCGAGTAGATCGTTCCCGGCTGAACTCAC
CATCCTTGAGGTCGGCGGTAGAGTCGTTCATTGATGTCGTAGGGTGTCTC
ACCCTGCATCCCTCAAGCGATCGCCGACCAACCCTGCTGTTTTGCGCCTT
TTTGGTTCTGTGGGTCGTCCCTCCCCTTTGGGTGCAGGTGTCGGCGGCCC
TAGTGAAGACGCTGCAGGGAGACATCCTCGAGGGCGGCGCGAAGCGGCTG
AAGAAGGGCGTGAAGAGGGCCAAAGACGGGCCAAGGTGAGGAACGCCAGC
TGCGCTGCGGATGACGGTACTGCCTGTGCAGTCTTGCTGGTTGCTGACTT
GTGTTTGCGCATAGATGGCTGTTCGTGGGTGCTGCCCGGGGCATATAGAG
CCGTCTACAAGCGGATGTCGGCGCCGCATCCAAGAGTATATATCTCGCGC
CGCACTGCTTTTCATCGTGTGCCGGTGAATTGCGCATGGCATGGTGTTCG
ATGTGTTTTCATGGTACGGCGGTGTCCATTGTTCTGGGCAAGATTGGAAT
ATTTTGTCGTTTTATACCTGCATTTTCGGTTTCACATGGCTGCTTGTTGC
CTTGGTTGCCGCTCGCTAAACTCTCTTGGCGTACCTACCCCGCTGGAAAA
ATATGCAGACCACTCGCTTCACCACGCCACACTGACACTGGAAGGAAGGT
GCGATTTGAGAACGGATAGTCTGCACGATTTGCACGCCACTGCGACCGTT
TTAACTTGTTCTAACGTCATGTTTACCACTCCACCTCCCGTTTGTATTGA
TGTTTTTTTCGAAGCGCTCCCGACGAGGCCAATGACGTGCCAGACGGGGC
GACGTAGAGAGAGAGGGACATGGGGCCTTGGCAAGGTCGCCAAGGTTGCA
GGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10722:2655..4258-

>mRNA_L-elsbetiae_contig10722.672.1 ID=mRNA_L-elsbetiae_contig10722.672.1|Name=mRNA_L-elsbetiae_contig10722.672.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig10722:2655..4258- (Laminarionema elsbetiae ELsaHSoW15)
TCGAAAGTGGACCCCAACGAAGACCCCCCCGAAGGAGCAGCGGGAGCAGC
AGGAGGAGTGCCCCCCTTCGGGCAAGCTGTTCCATTCTCGGTGCCAGAGT
CATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCATCAAAGGGCAAGGGG
ACTGGAGTCGAAAGTGGACCCCAACGAAGACCCCCCCGAAGGAGCAGCGG
GAGCAGCAGGAGGAGTGCCCCCCTTCGGGCAAGCTGTTCCATTCTCGGTG
CCAGAGTCATCGGTGAAGCCGGAAGTGGGGTACTCTTTCCCATCAAAGGG
CAAGGGGACTGGAGGTGTCGGCGGCCCTAGTGAAGACGCTGCAGGGAGAC
ATCCTCGAGGGCGGCGCGAAGCGGCTGAAGAAGGGCGTGAAGAGGGCCAA
AGACGGGCCAAGGTGTCGGCGGCCCTAGTGAAGACGCTGCAGGGAGACAT
CCTCGAGGGCGGCGCGAAGCGGCTGAAGAAGGGCGTGAAGAGGGCCAAAG
ACGGGCCAAGCGCTCCCGACGAGGCCAATGACGCTCCCGACGAGGCCAAT
GA
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