mRNA_L-elsbetiae_contig10716.668.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10716.668.1
Unique NamemRNA_L-elsbetiae_contig10716.668.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10716.668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10716contigL-elsbetiae_contig10716:3619..4242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size625
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.3358235-CDS-L-elsbetiae_contig10716:3618..39691622815290.3358235-CDS-L-elsbetiae_contig10716:3618..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10716 3619..3969 +
1691682820.1918297-CDS-L-elsbetiae_contig10716:3618..39691691682820.1918297-CDS-L-elsbetiae_contig10716:3618..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10716 3619..3969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.3485265-UTR-L-elsbetiae_contig10716:3969..42421622815290.3485265-UTR-L-elsbetiae_contig10716:3969..4242Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10716 3970..4242 +
1691682820.2013378-UTR-L-elsbetiae_contig10716:3969..42421691682820.2013378-UTR-L-elsbetiae_contig10716:3969..4242Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10716 3970..4242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10716.668.1prot_L-elsbetiae_contig10716.668.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10716 3619..3969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10716.668.1

>prot_L-elsbetiae_contig10716.668.1 ID=prot_L-elsbetiae_contig10716.668.1|Name=mRNA_L-elsbetiae_contig10716.668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
LVPGGHNSLSSLRRPLIYVPRAFLPSCPLPPGYITVSITQTHTHTERRHS
DHHLGHIFYTHTARRNSNAQTDRQTDRHDREKQKPPHASLSGDTRQSCEV
SSSPLPPGTPTHKNKK*
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mRNA from alignment at L-elsbetiae_contig10716:3619..4242+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10716.668.1 ID=mRNA_L-elsbetiae_contig10716.668.1|Name=mRNA_L-elsbetiae_contig10716.668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig10716:3619..4242+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTGCCAGGAGGCCATAATTCTCTCAGCTCCCTGCGGCGCCCCCTCAT
ATATGTACCACGGGCCTTCCTTCCTTCCTGTCCCCTCCCCCCTGGGTATA
TTACAGTCAGTATCACACAAACTCACACACACACAGAACGTAGACATTCC
GACCACCATCTAGGCCACATATTTTACACGCACACCGCCCGCAGAAACTC
CAACGCACAGACAGACAGACAGACCGACAGACATGATCGCGAAAAACAAA
AACCGCCACACGCCTCGCTCAGCGGAGACACACGCCAAAGTTGCGAGGTC
TCCTCCTCACCTCTCCCCCCCGGAACACCGACACACAAAAATAAAAAATG
AATCCCCTGTCCTCCTGCTCTTCCTGTCCTCCTCATTGTAGTGACCCAAG
TCAATCCCGCCGTTCCTTCTGAATCCCAACGCGTAAAGGTAATTCATTCA
AGCTTGGATTCCCATGATCTCCCTCTGTCATCGCCCCCTCAGCGCCGGAG
AAAGGCGTGCTTTCGATTTCCCTCTCCTTTTTTCTCTCACACATAAAGAT
GATGTACCTATGAGCTTCCGATTCTCCCCCCTCACCTCCTCTTCCTCCCA
CGAACCTCGAGCACGTAGAATACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10716:3619..4242+

>mRNA_L-elsbetiae_contig10716.668.1 ID=mRNA_L-elsbetiae_contig10716.668.1|Name=mRNA_L-elsbetiae_contig10716.668.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig10716:3619..4242+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTGCCAGGAGGCCATAATTCTCTCAGCTCCCTGCGGCGCCCCCTCAT
ATATGTACCACGGGCCTTCCTTCCTTCCTGTCCCCTCCCCCCTGGGTATA
TTACAGTCAGTATCACACAAACTCACACACACACAGAACGTAGACATTCC
GACCACCATCTAGGCCACATATTTTACACGCACACCGCCCGCAGAAACTC
CAACGCACAGACAGACAGACAGACCGACAGACATGATCGCGAAAAACAAA
AACCGCCACACGCCTCGCTCAGCGGAGACACACGCCAAAGTTGCGAGGTC
TCCTCCTCACCTCTCCCCCCCGGAACACCGACACACAAAAATAAAAAATG
ACTTGTGCCAGGAGGCCATAATTCTCTCAGCTCCCTGCGGCGCCCCCTCA
TATATGTACCACGGGCCTTCCTTCCTTCCTGTCCCCTCCCCCCTGGGTAT
ATTACAGTCAGTATCACACAAACTCACACACACACAGAACGTAGACATTC
CGACCACCATCTAGGCCACATATTTTACACGCACACCGCCCGCAGAAACT
CCAACGCACAGACAGACAGACAGACCGACAGACATGATCGCGAAAAACAA
AAACCGCCACACGCCTCGCTCAGCGGAGACACACGCCAAAGTTGCGAGGT
CTCCTCCTCACCTCTCCCCCCCGGAACACCGACACACAAAAATAAAAAAT
GA
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