mRNA_L-elsbetiae_contig10710.666.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10710.666.1
Unique NamemRNA_L-elsbetiae_contig10710.666.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 4.530e-45
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1
Query:    1 STVFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            S VFPLFGRLRRDASVEH+AGEHKPPPILRPVELT+VPDSVSTFEDVANTLTRCSEVCTLLSNQR VMKNTFFLRASLITHLVTRV
Sbjct:  760 SAVFPLFGRLRRDASVEHLAGEHKPPPILRPVELTVVPDSVSTFEDVANTLTRCSEVCTLLSNQRNVMKNTFFLRASLITHLVTRV 845          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: W7TMJ4_9STRA (EF-Hand 1, calcium-binding site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMJ4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.230e-25
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1
Query:    1 STVFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            +  FPL+GRLRRDASVEH+ G+ + PPIL PV+LTLVP+ VSTF DV N L  C ++CT++ NQ  +MKNT+  R SLI HL+TRV
Sbjct:  378 AACFPLWGRLRRDASVEHLIGQARVPPILLPVQLTLVPEKVSTFNDVTNALRHCVQLCTIMENQMYLMKNTYCHRISLIQHLITRV 463          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: A0A835Z7Z7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.570e-24
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 STVFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDS--VSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            S V PLFGRLRRD  V+H+AG    PPI+RPVELT VPD   + TFEDV   L R   VCTLL+NQR V+K+T+ LRA+L+ HL TRV
Sbjct: 1346 SGVLPLFGRLRRDTGVDHLAGGSAVPPIVRPVELTSVPDKGELETFEDVGRALQRAVHVCTLLANQRDVLKSTYLLRATLLAHLFTRV 1433          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: A0A2R5FYY4_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.440e-23
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 STVFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            +   P+FG  RRD SVEH+AG   PPPILRPV+LTLVPD++  F DVA TL  C  +CTLL NQ+ +++NT+ +R +LI HL T+V
Sbjct:  723 AACMPMFGPFRRDCSVEHLAGGAAPPPILRPVQLTLVPDAIEDFADVAITLRHCVNICTLLDNQKDLIRNTYCIRIALIQHLFTQV 808          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: A0A7S1XN75_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XN75_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.180e-20
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 STVFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            ++ FPLFGR RRD  VEH+ GE K PPI  PVEL+L+PD V+ F++ A+ L   +++CTLL NQ   +KN+  LR +L+THL  RV
Sbjct:  468 ASCFPLFGRFRRDTEVEHLKGEAKVPPIQLPVELSLIPDRVTDFQEAAHALRHAAQLCTLLGNQAEHIKNSATLRCTLVTHLALRV 553          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: A0A0L0DVD2_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVD2_THETB)

HSP 1 Score: 92.0 bits (227), Expect = 7.960e-20
Identity = 44/84 (52.38%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    7 VFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
             +PLF R  RD+SV+H+AGE  PPPILRP++LTLVP++V+T ++ A  L  C  V TLL+NQ  ++KN++ +R +LI+ L TRV
Sbjct:  491 AWPLFDRFVRDSSVDHLAGEPAPPPILRPMQLTLVPETVTTLDEAAQALRHCVSVSTLLANQASLVKNSYAVRVALISSLFTRV 574          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: A0A7S3T2B5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T2B5_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 2.050e-19
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 FPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            F LFGR  R  SV+H+AGE   PP++ PVEL+LVPD VS++EDV N L     +C LL+NQ+  + NT+ LR SL+ HL+T V
Sbjct:   91 FDLFGRALRGRSVDHLAGESALPPVVLPVELSLVPDCVSSYEDVCNALRHAVHLCELLANQQGYIPNTYCLRVSLLQHLLTAV 173          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: A0A7S3JZH5_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZH5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.040e-19
Identity = 42/84 (50.00%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 VFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            VFPLFGR RRDA V+H+AG    PPI  PVEL+ VPD+++ +   A  L +   VCTLL+NQ  ++++T+ LR +L+ H++TRV
Sbjct:  803 VFPLFGRFRRDADVDHLAGSAVVPPIQLPVELSSVPDAITDYHSAAIALRKALHVCTLLANQAHLIRHTYLLRCALLQHVLTRV 886          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: A0A2D8PPP4_9PROT (PEROXIDASE_4 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D8PPP4_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 1.460e-18
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 FPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            FPLFGR RRD  V  +AG    PPI  PVEL++VPD++ ++E  AN L R S+VC+LL+NQ  ++++T+ +R +L+ H +TRV
Sbjct:  176 FPLFGRFRRDTDVSSLAGAALIPPITLPVELSMVPDTIDSYESAANLLRRTSDVCSLLANQAHLIRHTYLMRFALLMHTLTRV 258          
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Match: F0YGN6_AURAN (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=F0YGN6_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.790e-18
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 FPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANTLTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV 258
            FPLFGR RRD  V  +AG    PPI  PVEL++VPD++ ++E  AN L R S+VC+LL+NQ  ++++T+ +R +L+ H +TRV
Sbjct:  561 FPLFGRFRRDTDVSSLAGAALIPPITLPVELSMVPDTIDSYESAANLLRRTSDVCSLLANQAHLIRHTYLMRFALLMHTLTRV 643          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10710.666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRI4_ECTSI4.530e-4595.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TMJ4_9STRA1.230e-2560.47EF-Hand 1, calcium-binding site n=2 Tax=Monodopsid... [more]
A0A835Z7Z7_9STRA9.570e-2461.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2R5FYY4_9STRA2.440e-2355.81Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A7S1XN75_9STRA1.180e-2052.33Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A0L0DVD2_THETB7.960e-2052.38Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S3T2B5_EMIHU2.050e-1953.01Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S3JZH5_9STRA7.040e-1950.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A2D8PPP4_9PROT1.460e-1849.40PEROXIDASE_4 domain-containing protein n=1 Tax=Rho... [more]
F0YGN6_AURAN1.790e-1849.40Uncharacterized protein n=2 Tax=cellular organisms... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10710contigL-elsbetiae_contig10710:758..1632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.256057-CDS-L-elsbetiae_contig10710:757..9521622815290.256057-CDS-L-elsbetiae_contig10710:757..952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10710 758..952 -
1691682820.1605735-CDS-L-elsbetiae_contig10710:757..9521691682820.1605735-CDS-L-elsbetiae_contig10710:757..952Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10710 758..952 -
1622815290.2674122-CDS-L-elsbetiae_contig10710:1569..16321622815290.2674122-CDS-L-elsbetiae_contig10710:1569..1632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10710 1570..1632 -
1691682820.1735086-CDS-L-elsbetiae_contig10710:1569..16321691682820.1735086-CDS-L-elsbetiae_contig10710:1569..1632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10710 1570..1632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10710.666.1prot_L-elsbetiae_contig10710.666.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10710 758..1632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10710.666.1

>prot_L-elsbetiae_contig10710.666.1 ID=prot_L-elsbetiae_contig10710.666.1|Name=mRNA_L-elsbetiae_contig10710.666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
STVFPLFGRLRRDASVEHMAGEHKPPPILRPVELTLVPDSVSTFEDVANT
LTRCSEVCTLLSNQRRVMKNTFFLRASLITHLVTRV
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mRNA from alignment at L-elsbetiae_contig10710:758..1632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10710.666.1 ID=mRNA_L-elsbetiae_contig10710.666.1|Name=mRNA_L-elsbetiae_contig10710.666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=875bp|location=Sequence derived from alignment at L-elsbetiae_contig10710:758..1632- (Laminarionema elsbetiae ELsaHSoW15)
TCGACAGTGTTTCCGCTGTTCGGGAGGCTCAGGAGGGACGCTTCGGTGGA ACACATGGCCGGGGTAAGACTCTCAATTTTTTCTCTCGTGTGTCTTGCCT CCATGGTTTGAAATTTTGGGGGGCGGGACGGAATCGAACGAGATGGGACG GAAAGGGGTGAGATGGAATGGGAAGGGGTGAAGTGGGGTGAAGTCTTCAT CTTTCGTCCTCACTCCAAAGTTTCGGGTCTGGTGGGGTGAGATGGGCTGG GGTGGCATGGGATAAGATGGAATGGGAAGGGGTGAGATTGGGTGAAGTCT TCATCTTTCGTCCTCACTCCAAAGTTTCGGGTCTGGTGGGTTGGGATTGG AATGGGTGGGATGAGATGGATGGGATGGGATGGGATGGATGGGATGGTAT GGGGTTAGGTCGGAGTCATTTGGGTGTGACTTGGCGAAACCCACCCGCTC GGGACAGATGATACCCTTGCTGCAGGCGAATTTTTAGGCGAGCACGAGCG CGCCATGCTGGGGCAAGAGTACGGCGCTAGCTTTCCCCGGAGCAGCGCGG AGTACCGTTTGTTAGAAGCATGCAACATCAGCACTCAGCCTCTGCCCGGA TATGATCCCCCCACACCTCCGTCTTCTTGAATGCTGTTTACGTTTTTCTG CATTTTCGTGTGTGTGTGTGTGTGCCCCAGGAGCATAAGCCGCCTCCTAT CCTTCGCCCGGTGGAACTCACCCTGGTGCCCGACTCGGTGTCGACGTTCG AAGACGTGGCGAACACGCTAACCCGCTGTTCCGAGGTGTGTACGCTGCTG TCCAACCAGCGGAGGGTGATGAAGAACACCTTCTTCCTGAGGGCCTCGCT CATCACTCACCTCGTCACCAGGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10710:758..1632-

>mRNA_L-elsbetiae_contig10710.666.1 ID=mRNA_L-elsbetiae_contig10710.666.1|Name=mRNA_L-elsbetiae_contig10710.666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig10710:758..1632- (Laminarionema elsbetiae ELsaHSoW15)
TCGACAGTGTTTCCGCTGTTCGGGAGGCTCAGGAGGGACGCTTCGGTGGA
ACACATGGCCGGGTCGACAGTGTTTCCGCTGTTCGGGAGGCTCAGGAGGG
ACGCTTCGGTGGAACACATGGCCGGGGAGCATAAGCCGCCTCCTATCCTT
CGCCCGGTGGAACTCACCCTGGTGCCCGACTCGGTGTCGACGTTCGAAGA
CGTGGCGAACACGCTAACCCGCTGTTCCGAGGTGTGTACGCTGCTGTCCA
ACCAGCGGAGGGTGATGAAGAACACCTTCTTCCTGAGGGCCTCGCTCATC
ACTCACCTCGTCACCAGGGTGGAGCATAAGCCGCCTCCTATCCTTCGCCC
GGTGGAACTCACCCTGGTGCCCGACTCGGTGTCGACGTTCGAAGACGTGG
CGAACACGCTAACCCGCTGTTCCGAGGTGTGTACGCTGCTGTCCAACCAG
CGGAGGGTGATGAAGAACACCTTCTTCCTGAGGGCCTCGCTCATCACTCA
CCTCGTCACCAGGGTG
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