mRNA_L-elsbetiae_contig10706.660.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10706.660.1
Unique NamemRNA_L-elsbetiae_contig10706.660.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10706.660.1 vs. uniprot
Match: D7G1M3_ECTSI (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M3_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.090e-26
Identity = 72/154 (46.75%), Postives = 85/154 (55.19%), Query Frame = 1 
Query:  199 EARFSVTLPAPRGPRDRRRAITKAATNGLAPLLEGFAAGRSVGLLQVLNGTASLEIAAEIAAPRQAASGVSAAXXXXXXXXXXXXXXAVVALTLRDGNVVWGEGQELWLTLGEGSSXXXXXXXXXXXXXXXXHQQRGRQRGSARYDFLLLWSAP 660
            +ARFSVTLP PRGP DR RA+TK  TNGL PLLEGF AG  VGLL VLN TASL +++    P    +   AA                VALT+RD + VWG+GQELW++L +                          RGSARYDFL+LW AP
Sbjct:   26 QARFSVTLPPPRGPDDRCRAVTKVVTNGLVPLLEGFTAGEGVGLLHVLNTTASLAVSS---IPPPTTTVQEAAGTVGATAVSPAPPATTVALTIRDSSAVWGQGQELWMSLAQEEDTSCGGSADDDALAKVP-------RGSARYDFLVLWCAP 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10706.660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1M3_ECTSI1.090e-2646.75SpoU_methylase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10706contigL-elsbetiae_contig10706:1504..2489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue3.8e-25
Seed eggNOG ortholog2880.D7G1M3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SpoU rRNA Methylase family
EggNOG OGs2S6AC@2759,COG0566@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAlpha/beta knot methyltransferases
Ec32 orthologEc-26_000960.1
Exons2
Model size767
Cds size765
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.4404821-CDS-L-elsbetiae_contig10706:1504..20151622815289.4404821-CDS-L-elsbetiae_contig10706:1504..2015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10706 1505..2015 -
1691682819.6308408-CDS-L-elsbetiae_contig10706:1504..20151691682819.6308408-CDS-L-elsbetiae_contig10706:1504..2015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10706 1505..2015 -
1622815289.4503002-CDS-L-elsbetiae_contig10706:2235..24891622815289.4503002-CDS-L-elsbetiae_contig10706:2235..2489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10706 2236..2489 -
1691682819.6413028-CDS-L-elsbetiae_contig10706:2235..24891691682819.6413028-CDS-L-elsbetiae_contig10706:2235..2489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10706 2236..2489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10706.660.1prot_L-elsbetiae_contig10706.660.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10706 1505..2489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10706.660.1

>prot_L-elsbetiae_contig10706.660.1 ID=prot_L-elsbetiae_contig10706.660.1|Name=mRNA_L-elsbetiae_contig10706.660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
QALAWLAPRVSPPTPSQGASHRHSCRARWRWPCSTTAAGSAEAHSASAAA
PTPTLPPPAALPLSWQEARFSVTLPAPRGPRDRRRAITKAATNGLAPLLE
GFAAGRSVGLLQVLNGTASLEIAAEIAAPRQAASGVSAAAAMAAEDGGQG
AAAAVVALTLRDGNVVWGEGQELWLTLGEGSSSGGGGGDDAPLLKDDQHQ
QRGRQRGSARYDFLLLWSAPVGNIGSSSSSSSGGGGGGGGGENAATGLKG
KGRPS
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mRNA from alignment at L-elsbetiae_contig10706:1504..2489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10706.660.1 ID=mRNA_L-elsbetiae_contig10706.660.1|Name=mRNA_L-elsbetiae_contig10706.660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=986bp|location=Sequence derived from alignment at L-elsbetiae_contig10706:1504..2489- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGCTGGCCTGGTTGGCACCACGGGTATCCCCCCCCACCCCTTCTCA
AGGAGCCAGCCACAGGCACAGCTGCCGAGCCCGCTGGCGCTGGCCGTGCT
CAACAACAGCAGCGGGCTCGGCAGAAGCCCACAGCGCCAGCGCCGCGGCA
CCTACACCCACACTGCCACCGCCAGCGGCGCTACCGCTGTCTTGGCAGGA
GGCGCGATTCTCTGTGACCCTGCCGGCCCCAAGGGGGCCCCGCGACAGGC
GCAGGTGCGTGACGCACGGAAAACGTACTGGCATCATCTTGTATCGGGTT
GGTATGTAGTGATGATATCCGTCAATTTTTCTCAGCGACGTTCTTACCTA
CCGTACCAACTGAGTGAAGCAAGCCAGAGTTGCGCGTGATTTTCAACCCC
CATCCCGAGGCCGCCCCACCACAAAACTGCTATGCTATTGCGTCCATATG
ATTCGGTGTTATTTTGACGGGCAGGGCCATCACTAAGGCGGCCACGAACG
GACTGGCGCCACTCCTCGAGGGATTTGCAGCAGGGCGGAGCGTCGGGCTC
CTGCAGGTCCTCAACGGCACCGCATCGCTGGAGATAGCGGCGGAGATAGC
GGCGCCCAGACAAGCAGCATCAGGGGTGTCAGCGGCGGCAGCGATGGCAG
CGGAAGATGGCGGTCAAGGCGCGGCGGCCGCCGTAGTAGCGCTCACGCTG
CGCGATGGAAACGTGGTGTGGGGGGAAGGGCAAGAGCTGTGGCTGACCCT
GGGCGAAGGAAGCAGCAGCGGCGGTGGCGGCGGCGACGACGCGCCGCTCT
TGAAGGACGACCAGCATCAGCAGCGGGGGCGGCAACGAGGCTCCGCTCGG
TACGACTTTCTGCTGCTCTGGTCTGCGCCAGTGGGAAATATTGGCAGCAG
CAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGAGAAAACG
CCGCGACCGGGCTAAAGGGCAAGGGTAGACCCAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10706:1504..2489-

>mRNA_L-elsbetiae_contig10706.660.1 ID=mRNA_L-elsbetiae_contig10706.660.1|Name=mRNA_L-elsbetiae_contig10706.660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig10706:1504..2489- (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGCTGGCCTGGTTGGCACCACGGGTATCCCCCCCCACCCCTTCTCA
AGGAGCCAGCCACAGGCACAGCTGCCGAGCCCGCTGGCGCTGGCCGTGCT
CAACAACAGCAGCGGGCTCGGCAGAAGCCCACAGCGCCAGCGCCGCGGCA
CCTACACCCACACTGCCACCGCCAGCGGCGCTACCGCTGTCTTGGCAGGA
GGCGCGATTCTCTGTGACCCTGCCGGCCCCAAGGGGGCCCCGCGACAGGC
GCAGCAGGCGCTGGCCTGGTTGGCACCACGGGTATCCCCCCCCACCCCTT
CTCAAGGAGCCAGCCACAGGCACAGCTGCCGAGCCCGCTGGCGCTGGCCG
TGCTCAACAACAGCAGCGGGCTCGGCAGAAGCCCACAGCGCCAGCGCCGC
GGCACCTACACCCACACTGCCACCGCCAGCGGCGCTACCGCTGTCTTGGC
AGGAGGCGCGATTCTCTGTGACCCTGCCGGCCCCAAGGGGGCCCCGCGAC
AGGCGCAGGGCCATCACTAAGGCGGCCACGAACGGACTGGCGCCACTCCT
CGAGGGATTTGCAGCAGGGCGGAGCGTCGGGCTCCTGCAGGTCCTCAACG
GCACCGCATCGCTGGAGATAGCGGCGGAGATAGCGGCGCCCAGACAAGCA
GCATCAGGGGTGTCAGCGGCGGCAGCGATGGCAGCGGAAGATGGCGGTCA
AGGCGCGGCGGCCGCCGTAGTAGCGCTCACGCTGCGCGATGGAAACGTGG
TGTGGGGGGAAGGGCAAGAGCTGTGGCTGACCCTGGGCGAAGGAAGCAGC
AGCGGCGGTGGCGGCGGCGACGACGCGCCGCTCTTGAAGGACGACCAGCA
TCAGCAGCGGGGGCGGCAACGAGGCTCCGCTCGGTACGACTTTCTGCTGC
TCTGGTCTGCGCCAGTGGGAAATATTGGCAGCAGCAGCAGCAGCAGCAGC
GGCGGCGGCGGCGGCGGCGGCGGGGGAGAAAACGCCGCGACCGGGCTAAA
GGGCAAGGGTAGACCCAGCGGCCATCACTAAGGCGGCCACGAACGGACTG
GCGCCACTCCTCGAGGGATTTGCAGCAGGGCGGAGCGTCGGGCTCCTGCA
GGTCCTCAACGGCACCGCATCGCTGGAGATAGCGGCGGAGATAGCGGCGC
CCAGACAAGCAGCATCAGGGGTGTCAGCGGCGGCAGCGATGGCAGCGGAA
GATGGCGGTCAAGGCGCGGCGGCCGCCGTAGTAGCGCTCACGCTGCGCGA
TGGAAACGTGGTGTGGGGGGAAGGGCAAGAGCTGTGGCTGACCCTGGGCG
AAGGAAGCAGCAGCGGCGGTGGCGGCGGCGACGACGCGCCGCTCTTGAAG
GACGACCAGCATCAGCAGCGGGGGCGGCAACGAGGCTCCGCTCGGTACGA
CTTTCTGCTGCTCTGGTCTGCGCCAGTGGGAAATATTGGCAGCAGCAGCA
GCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGAGAAAACGCCGCG
ACCGGGCTAAAGGGCAAGGGTAGACCCAGC
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