mRNA_L-elsbetiae_contig10698.652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10698.652.1
Unique NamemRNA_L-elsbetiae_contig10698.652.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: D7FTC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.630e-26
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    4 AEAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
            A+AELRLYCAFSFPAVV+TIGP+RWHELRESFA LIRDPSWSVRKTLSFSLHE+
Sbjct:  317 ADAELRLYCAFSFPAVVVTIGPDRWHELRESFAALIRDPSWSVRKTLSFSLHEI 370
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: A0A7S1IWX7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IWX7_9EUGL)

HSP 1 Score: 73.2 bits (178), Expect = 5.320e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    7 EAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
            E+EL  YCAFSFPAV+ + GPERW EL  ++ +L+ DP W VR++LS SLHEV
Sbjct:   22 ESELVEYCAFSFPAVLQSCGPERWPELETTYLSLMEDPQWKVRRSLSHSLHEV 74
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: A0A7S1NKF8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NKF8_9EUGL)

HSP 1 Score: 73.2 bits (178), Expect = 8.670e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    7 EAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
            E+EL  YCAFSFPAV+ + GPERW EL  ++ +L+ DP W VR++LS SLHEV
Sbjct:  153 ESELVEYCAFSFPAVLQSCGPERWPELETTYLSLMEDPQWKVRRSLSHSLHEV 205
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: A0A0S4J1S0_BODSA (Uncharacterized protein n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J1S0_BODSA)

HSP 1 Score: 72.0 bits (175), Expect = 2.300e-13
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    7 EAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
            +++   YCAFSFPAVV  +G ERW E+ ++FATL++D  W VRK+L++SLHE+
Sbjct:  321 DSDFAEYCAFSFPAVVQVVGKERWREVDDAFATLLKDVQWKVRKSLAYSLHEL 373
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: A0A7S1CBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBG0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-13
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 EAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
            + +L LYCAFSFPAV +T+GP+RW ELR  F  L RD    VR+TLS SLHEV
Sbjct:  327 DGDLSLYCAFSFPAVALTLGPDRWPELRALFLALSRDVQRKVRRTLSHSLHEV 379
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: Q4QDX5_LEIMA (Uncharacterized protein n=13 Tax=Leishmania TaxID=5658 RepID=Q4QDX5_LEIMA)

HSP 1 Score: 71.2 bits (173), Expect = 4.300e-13
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QAEAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
              E+ L  YCA+ FPAVV  IGP RW+E+ +++AT+++D  W VRK+L++SLHE+
Sbjct:  324 NVESPLSEYCAYCFPAVVQVIGPSRWNEVADAYATMLKDVQWKVRKSLAYSLHEM 378
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: A0A836GYB1_9TRYP (Uncharacterized protein n=5 Tax=Leishmania TaxID=5658 RepID=A0A836GYB1_9TRYP)

HSP 1 Score: 71.2 bits (173), Expect = 4.300e-13
Identity = 28/55 (50.91%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 QAEAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
              E+ L  YCA+ FPAVV  IGP RW+E+ +++AT+++D  W VRK+L++SLHE+
Sbjct:  324 NVESPLSEYCAYCFPAVVQAIGPSRWNEVADAYATMLKDVQWKVRKSLAYSLHEM 378
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: A0A0N1IHR7_LEPSE (Uncharacterized protein n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1IHR7_LEPSE)

HSP 1 Score: 71.2 bits (173), Expect = 4.310e-13
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QAEAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
              E+ L  YCAF FPAVV  IGP RW E+ +++AT+++D  W VRK+L++SLHE+
Sbjct:  324 NVESPLSEYCAFCFPAVVQVIGPSRWPEVADAYATMLKDVQWKVRKSLAYSLHEM 378
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: A0A0M9FYH9_9TRYP (Uncharacterized protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9FYH9_9TRYP)

HSP 1 Score: 71.2 bits (173), Expect = 4.310e-13
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QAEAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
              E+ L  YCAF FPAVV  IGP RW E+ +++AT+++D  W VRK+L++SLHE+
Sbjct:  324 NVESPLSEYCAFCFPAVVQVIGPSRWPEVADAYATMLKDVQWKVRKSLAYSLHEM 378
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BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Match: W6KI57_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KI57_9TRYP)

HSP 1 Score: 70.9 bits (172), Expect = 5.880e-13
Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QAEAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSFSLHEV 165
              + EL  YCA+SFPA+V  IGPERW E+++++ T+++D  W VRK+L+ SLH V
Sbjct:  324 NGDCELSEYCAYSFPAIVQAIGPERWDEVQDAYCTMLKDVQWKVRKSLAHSLHVV 378
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10698.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTC4_ECTSI1.630e-2690.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1IWX7_9EUGL5.320e-1460.38Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1NKF8_9EUGL8.670e-1460.38Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A0S4J1S0_BODSA2.300e-1354.72Uncharacterized protein n=1 Tax=Bodo saltans TaxID... [more]
A0A7S1CBG0_9STRA2.310e-1362.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
Q4QDX5_LEIMA4.300e-1350.91Uncharacterized protein n=13 Tax=Leishmania TaxID=... [more]
A0A836GYB1_9TRYP4.300e-1350.91Uncharacterized protein n=5 Tax=Leishmania TaxID=5... [more]
A0A0N1IHR7_LEPSE4.310e-1352.73Uncharacterized protein n=1 Tax=Leptomonas seymour... [more]
A0A0M9FYH9_9TRYP4.310e-1352.73Uncharacterized protein n=1 Tax=Leptomonas pyrrhoc... [more]
W6KI57_9TRYP5.880e-1350.91Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10698contigL-elsbetiae_contig10698:105..269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue7.1e-22
Seed eggNOG ortholog2880.D7FTC4
Preferred namePPP4R1
KEGG koko:K15424,ko:K15426
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0016310,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0023052,GO:0030234,GO:0030289,GO:0031323,GO:0031399,GO:0032268,GO:0032991,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043412,GO:0043666,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
Ec32 ortholog descriptionProtein phosphatase 4 regulatory subunit 1
Ec32 orthologEc-21_000820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815288.3707383-CDS-L-elsbetiae_contig10698:104..2691622815288.3707383-CDS-L-elsbetiae_contig10698:104..269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10698 105..269 +
1691682818.944148-CDS-L-elsbetiae_contig10698:104..2691691682818.944148-CDS-L-elsbetiae_contig10698:104..269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10698 105..269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10698.652.1prot_L-elsbetiae_contig10698.652.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10698 105..269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10698.652.1

>prot_L-elsbetiae_contig10698.652.1 ID=prot_L-elsbetiae_contig10698.652.1|Name=mRNA_L-elsbetiae_contig10698.652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
QAEAELRLYCAFSFPAVVITIGPERWHELRESFATLIRDPSWSVRKTLSF
SLHEV
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mRNA from alignment at L-elsbetiae_contig10698:105..269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10698.652.1 ID=mRNA_L-elsbetiae_contig10698.652.1|Name=mRNA_L-elsbetiae_contig10698.652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig10698:105..269+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGAGGCGGAGCTGCGGCTGTACTGCGCCTTCTCGTTTCCGGCAGT
GGTGATCACCATCGGTCCGGAACGGTGGCACGAGCTGAGGGAGTCGTTCG
CCACTCTGATCAGAGACCCCAGCTGGTCGGTGCGCAAGACACTCAGCTTT
AGCCTACACGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10698:105..269+

>mRNA_L-elsbetiae_contig10698.652.1 ID=mRNA_L-elsbetiae_contig10698.652.1|Name=mRNA_L-elsbetiae_contig10698.652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig10698:105..269+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGAGGCGGAGCTGCGGCTGTACTGCGCCTTCTCGTTTCCGGCAGT
GGTGATCACCATCGGTCCGGAACGGTGGCACGAGCTGAGGGAGTCGTTCG
CCACTCTGATCAGAGACCCCAGCTGGTCGGTGCGCAAGACACTCAGCTTT
AGCCTACACGAGGTGCAGGCGGAGGCGGAGCTGCGGCTGTACTGCGCCTT
CTCGTTTCCGGCAGTGGTGATCACCATCGGTCCGGAACGGTGGCACGAGC
TGAGGGAGTCGTTCGCCACTCTGATCAGAGACCCCAGCTGGTCGGTGCGC
AAGACACTCAGCTTTAGCCTACACGAGGTG
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