mRNA_L-elsbetiae_contig10688.645.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10688.645.1
Unique NamemRNA_L-elsbetiae_contig10688.645.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: D8LL39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL39_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.340e-33
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + DELMGVNRNLDNEEGV++ F+DERVCK YLCGLCPHDLFSNTKQDLGACDYLHDEELK
Sbjct:   18 LLDELMGVNRNLDNEEGVVDDFKDERVCKAYLCGLCPHDLFSNTKQDLGACDYLHDEELK 77
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BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A6H5K8V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V8_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.280e-32
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + DELMGVNRNLDNEEGVI+ F+DERVCK YLCGLCPHDLFSNTKQDLGACDYLHDEELK
Sbjct:   18 LLDELMGVNRNLDNEEGVIDDFKDERVCKAYLCGLCPHDLFSNTKQDLGACDYLHDEELK 77
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BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A813AYK0_9DINO (Luc7l3 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AYK0_9DINO)

HSP 1 Score: 89.7 bits (221), Expect = 1.760e-20
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + D LMGVNRN DNE+ +I    DERVCK +LCGLCP+DLF NTK+D+G C   HDE LK
Sbjct:    8 LLDRLMGVNRNEDNEDALITDLHDERVCKDFLCGLCPNDLFVNTKEDVGPCQLRHDENLK 67
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BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A2D4CI42_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CI42_PYTIN)

HSP 1 Score: 80.5 bits (197), Expect = 1.490e-18
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKA 183
            + DELMG NR+ D  E  I +++D+RVCK +LCGLCPHDLF NTK DLG C  LH  +L A
Sbjct:    7 LLDELMGKNRDGDRPEEEITNYRDKRVCKRFLCGLCPHDLFQNTKMDLGECAQLHLPKLLA 67
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BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A4D9D3Z1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3Z1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.660e-18
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + DE+MG+NRNLDN +  I+ ++DERVCK +L G CPHD+FS TK DLG C+ +HDE L+
Sbjct:    7 MLDEMMGMNRNLDNPDAEIQDYRDERVCKHFLLGCCPHDVFSKTKIDLGQCEGMHDEALQ 66
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BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A6A5AV92_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AV92_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.880e-18
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + DELMG NR+ D  E  I  F+D RVCK +LCGLCPHDLF NTK D+G C+ LH  +LK
Sbjct:   34 LLDELMGRNRDGDKPEEDISDFRDSRVCKRFLCGLCPHDLFQNTKMDMGECEKLHLPKLK 93
[Close]
BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A2D4BLN9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLN9_PYTIN)

HSP 1 Score: 80.5 bits (197), Expect = 2.390e-17
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELKA 183
            + DELMG NR+ D  E  I +++D+RVCK +LCGLCPHDLF NTK DLG C  LH  +L A
Sbjct:    7 LLDELMGKNRDGDRPEEEITNYRDKRVCKRFLCGLCPHDLFQNTKMDLGECAQLHLPKLLA 67
[Close]
BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A8K1CCH2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCH2_PYTOL)

HSP 1 Score: 82.8 bits (203), Expect = 2.680e-17
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + DELMG NR+ D  E  I  F+D RVCK YLCGLCPHDLF NTK DLG C  LH  +LK
Sbjct:    7 LLDELMGRNRDGDKPEEEINDFRDSRVCKRYLCGLCPHDLFQNTKMDLGECAKLHLPKLK 66
[Close]
BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: R7T6G3_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T6G3_CAPTE)

HSP 1 Score: 82.8 bits (203), Expect = 3.100e-17
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIE-HFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + DELMG NRN+D      E H++D  VCK +LCGLCPH+LF+NT+ DLG CD LHDE LK
Sbjct:    7 MLDELMGRNRNVDPTRKSDELHWEDSEVCKHFLCGLCPHELFTNTRADLGPCDKLHDESLK 67
[Close]
BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Match: A0A485KC95_9STRA (Aste57867_2639 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC95_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.650e-17
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 IADELMGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLHDEELK 180
            + DELMG NR+ D  E  I  F+D RVCK +LCGLCPHDLF NTK D+G C+ LH  +LK
Sbjct:    7 LLDELMGRNRDGDRPEEEITDFRDSRVCKRFLCGLCPHDLFQNTKMDMGECEKLHLPKLK 66
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10688.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL39_ECTSI1.340e-3388.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8V8_9PHAE2.280e-3290.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A813AYK0_9DINO1.760e-2063.33Luc7l3 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A2D4CI42_PYTIN1.490e-1859.02Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A4D9D3Z1_9STRA4.660e-1858.33Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6A5AV92_9STRA4.880e-1860.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A2D4BLN9_PYTIN2.390e-1759.02Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CCH2_PYTOL2.680e-1763.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
R7T6G3_CAPTE3.100e-1760.66Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A485KC95_9STRA6.650e-1760.00Aste57867_2639 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10688contigL-elsbetiae_contig10688:4297..4921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue5.9e-24
Seed eggNOG ortholog2880.D8LL39
Preferred nameLUC7
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.mRNA splice site selection
EggNOG OGsCOG5200@1,KOG0796@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size183
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10688.645.1prot_L-elsbetiae_contig10688.645.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10688 4312..4921 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.3983629-UTR-L-elsbetiae_contig10688:4296..43111622815287.3983629-UTR-L-elsbetiae_contig10688:4296..4311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10688 4297..4311 +
1691682818.3760602-UTR-L-elsbetiae_contig10688:4296..43111691682818.3760602-UTR-L-elsbetiae_contig10688:4296..4311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10688 4297..4311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.412567-CDS-L-elsbetiae_contig10688:4311..44211622815287.412567-CDS-L-elsbetiae_contig10688:4311..4421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10688 4312..4421 +
1691682818.3941174-CDS-L-elsbetiae_contig10688:4311..44211691682818.3941174-CDS-L-elsbetiae_contig10688:4311..4421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10688 4312..4421 +
1622815287.4231458-CDS-L-elsbetiae_contig10688:4863..49211622815287.4231458-CDS-L-elsbetiae_contig10688:4863..4921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10688 4864..4921 +
1691682818.406397-CDS-L-elsbetiae_contig10688:4863..49211691682818.406397-CDS-L-elsbetiae_contig10688:4863..4921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10688 4864..4921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10688.645.1

>prot_L-elsbetiae_contig10688.645.1 ID=prot_L-elsbetiae_contig10688.645.1|Name=mRNA_L-elsbetiae_contig10688.645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MGVNRNLDNEEGVIEHFQDERVCKPYLCGLCPHDLFSNTKQDLGACDYLH
DEELKA
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mRNA from alignment at L-elsbetiae_contig10688:4297..4921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10688.645.1 ID=mRNA_L-elsbetiae_contig10688.645.1|Name=mRNA_L-elsbetiae_contig10688.645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=625bp|location=Sequence derived from alignment at L-elsbetiae_contig10688:4297..4921+ (Laminarionema elsbetiae ELsaHSoW15)
ATTGCAGATGAGCTGATGGGCGTGAATCGCAACCTCGACAACGAGGAGGG
CGTGATCGAACACTTCCAGGACGAGCGCGTGTGCAAGCCCTACCTTTGCG
GCCTTTGCCCGCACGACCTCTTCAGGTACGTTGTGTATGTAACTGCTGTG
GACTAACACTAACTATCATGCGGATGCCGCGTCACCACTGCTACAAAACC
ACTGCTGGTGTGTGTGTGTGTGTTGCTTCACGTTCGTTTTCTTCTTCGTA
ATTTAGTTTTTTTTTTCTTCTCTTTACATTTTACTTCCTGTGCTCGATGG
GCTCCTTGCCACGAGGGCATGTTGCCAGTGTAACGAACCGTGGTCACACA
GAAGAGTTCCTTTTCCCCCGAGGCCCCCACTTCAAAACATAAAACTAGTA
GACTAATGCATTTTTTGTACATAACCTACAAGTGTAGATTAAATGCGTGC
ATAGGTTCCGTCGTCTTTTTCTCTCCCGCTGTTGATGGCTTCTTTTTCTT
TGTGTCGCGCTCGCAATGTCGTCGTCGTCGTCGTCGTCATCGTGTCTGTT
TTGGCTTGTCTTGTCAGCAACACCAAGCAGGACCTTGGCGCGTGCGACTA
CCTCCACGACGAGGAGCTCAAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10688:4297..4921+

>mRNA_L-elsbetiae_contig10688.645.1 ID=mRNA_L-elsbetiae_contig10688.645.1|Name=mRNA_L-elsbetiae_contig10688.645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig10688:4297..4921+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGTGAATCGCAACCTCGACAACGAGGAGGGCGTGATCGAACACTT
CCAGGACGAGCGCGTGTGCAAGCCCTACCTTTGCGGCCTTTGCCCGCACG
ACCTCTTCAGATGGGCGTGAATCGCAACCTCGACAACGAGGAGGGCGTGA
TCGAACACTTCCAGGACGAGCGCGTGTGCAAGCCCTACCTTTGCGGCCTT
TGCCCGCACGACCTCTTCAGCAACACCAAGCAGGACCTTGGCGCGTGCGA
CTACCTCCACGACGAGGAGCTCAAGGCGCAACACCAAGCAGGACCTTGGC
GCGTGCGACTACCTCCACGACGAGGAGCTCAAGGCG
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