mRNA_L-elsbetiae_contig10683.643.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10683.643.1
Unique NamemRNA_L-elsbetiae_contig10683.643.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10683.643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10683contigL-elsbetiae_contig10683:5145..6107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size965
Cds size561
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.282249-CDS-L-elsbetiae_contig10683:5144..57051622815287.282249-CDS-L-elsbetiae_contig10683:5144..5705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10683 5145..5705 +
1691682818.287705-CDS-L-elsbetiae_contig10683:5144..57051691682818.287705-CDS-L-elsbetiae_contig10683:5144..5705Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10683 5145..5705 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.291915-UTR-L-elsbetiae_contig10683:5705..61071622815287.291915-UTR-L-elsbetiae_contig10683:5705..6107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10683 5706..6107 +
1691682818.2972677-UTR-L-elsbetiae_contig10683:5705..61071691682818.2972677-UTR-L-elsbetiae_contig10683:5705..6107Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10683 5706..6107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10683.643.1prot_L-elsbetiae_contig10683.643.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10683 5145..5705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10683.643.1

>prot_L-elsbetiae_contig10683.643.1 ID=prot_L-elsbetiae_contig10683.643.1|Name=mRNA_L-elsbetiae_contig10683.643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
PGLVCGGTQTRLTARRRRSTNSPPPPPPQGIHTDGLLQEEAHPHQQLEFL
GGLAKRYNIVYPAVSPLHLHLSTCVEKREQRKSQPPPGSSCRTDDAPTQL
SSQHGARTLPPPSTQDTKYQRLRRSLPLLQQVGPRYHPKRWARAGGGGHR
RRNTRHAVFPCFRAAGPLPRERNAQLEGSCLALRPT*
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mRNA from alignment at L-elsbetiae_contig10683:5145..6107+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10683.643.1 ID=mRNA_L-elsbetiae_contig10683.643.1|Name=mRNA_L-elsbetiae_contig10683.643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=963bp|location=Sequence derived from alignment at L-elsbetiae_contig10683:5145..6107+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGGTTTGGTGTGTGGGGGTACACAGACACGACTGACTGCCAGACGGAG
GCGATCGACAAATTCCCCGCCCCCCCCCCCCCCGCAAGGAATACATACGG
ACGGACTCCTTCAAGAAGAAGCACACCCACACCAGCAGCTGGAATTTTTG
GGCGGACTGGCAAAAAGGTATAATATTGTGTACCCAGCCGTCAGCCCCTT
ACACCTCCACCTCTCCACCTGTGTGGAGAAAAGGGAGCAGCGTAAATCGC
AACCTCCCCCCGGCAGCAGTTGCAGGACAGACGACGCGCCAACCCAACTT
TCCTCTCAGCACGGAGCGCGGACTCTTCCCCCACCCAGCACACAAGACAC
AAAATACCAACGCCTTCGCAGGTCCCTCCCGCTACTGCAGCAAGTGGGGC
CCCGCTATCACCCAAAAAGATGGGCGCGCGCGGGGGGGGGGGGGCATAGG
AGAAGAAATACAAGACATGCCGTGTTTCCCTGCTTTCGTGCTGCGGGGCC
CCTCCCACGCGAACGAAACGCTCAACTCGAAGGTTCGTGTCTGGCACTAC
GACCAACGTAGAGAGCACACAACACACATCTACCCCCGCCCAGTTCCACC
GCGCCTTCTTCCGCGGCCTAGATATATAGATGTAAACATATACTACAATA
CCCCCACCCACTCAAACACGCACTTTGTGCTTACCACATATGTAGTATCG
GATTCTCGTATTAGTACTCTCGGCGGCGTCACTCTCGGCAACACACACCA
CCCAGCTCTCGGGAACCGCTACATCATGACATCATGAAACCATAGTCTTC
TCTGCAGCTCTGCAAGGCAACCATGTAGTCTACAAACATGTCTCTTCGGT
CTCGGGGGGCACGGGGGGGCTGAAAAAACACAGTGCCCCCTGCTAGCACG
GTAAAACCAAGGGCACCACCGACCCCACCCTGCGGCACCCCCCCCCTCTG
CGCGCGGCCCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10683:5145..6107+

>mRNA_L-elsbetiae_contig10683.643.1 ID=mRNA_L-elsbetiae_contig10683.643.1|Name=mRNA_L-elsbetiae_contig10683.643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig10683:5145..6107+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGGTTTGGTGTGTGGGGGTACACAGACACGACTGACTGCCAGACGGAG
GCGATCGACAAATTCCCCGCCCCCCCCCCCCCCGCAAGGAATACATACGG
ACGGACTCCTTCAAGAAGAAGCACACCCACACCAGCAGCTGGAATTTTTG
GGCGGACTGGCAAAAAGGTATAATATTGTGTACCCAGCCGTCAGCCCCTT
ACACCTCCACCTCTCCACCTGTGTGGAGAAAAGGGAGCAGCGTAAATCGC
AACCTCCCCCCGGCAGCAGTTGCAGGACAGACGACGCGCCAACCCAACTT
TCCTCTCAGCACGGAGCGCGGACTCTTCCCCCACCCAGCACACAAGACAC
AAAATACCAACGCCTTCGCAGGTCCCTCCCGCTACTGCAGCAAGTGGGGC
CCCGCTATCACCCAAAAAGATGGGCGCGCGCGGGGGGGGGGGGGCATAGG
AGAAGAAATACAAGACATGCCGTGTTTCCCTGCTTTCGTGCTGCGGGGCC
CCTCCCACGCGAACGAAACGCTCAACTCGAAGGTTCGTGTCTGGCACTAC
GACCAACGTAGCCTGGTTTGGTGTGTGGGGGTACACAGACACGACTGACT
GCCAGACGGAGGCGATCGACAAATTCCCCGCCCCCCCCCCCCCCGCAAGG
AATACATACGGACGGACTCCTTCAAGAAGAAGCACACCCACACCAGCAGC
TGGAATTTTTGGGCGGACTGGCAAAAAGGTATAATATTGTGTACCCAGCC
GTCAGCCCCTTACACCTCCACCTCTCCACCTGTGTGGAGAAAAGGGAGCA
GCGTAAATCGCAACCTCCCCCCGGCAGCAGTTGCAGGACAGACGACGCGC
CAACCCAACTTTCCTCTCAGCACGGAGCGCGGACTCTTCCCCCACCCAGC
ACACAAGACACAAAATACCAACGCCTTCGCAGGTCCCTCCCGCTACTGCA
GCAAGTGGGGCCCCGCTATCACCCAAAAAGATGGGCGCGCGCGGGGGGGG
GGGGGCATAGGAGAAGAAATACAAGACATGCCGTGTTTCCCTGCTTTCGT
GCTGCGGGGCCCCTCCCACGCGAACGAAACGCTCAACTCGAAGGTTCGTG
TCTGGCACTACGACCAACGTAG
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