mRNA_L-elsbetiae_contig10678.638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10678.638.1
Unique NamemRNA_L-elsbetiae_contig10678.638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.360e-42
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAI+YVTTIKKRFS EPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQ+QARERLNRAA
Sbjct:  297 FDHAISYVTTIKKRFSTEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQDQARERLNRAA 376
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A7S3Y2Z2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2Z2_HETAK)

HSP 1 Score: 140 bits (354), Expect = 7.860e-41
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAI+YVTTIK+RF  EP  YKAFLEILHTYQKEQRGIKDVLEQVS+LFADHPDLL+EFTYFLPD VQ QA+ERLNRAA
Sbjct:   80 FDHAISYVTTIKRRFQSEPAIYKAFLEILHTYQKEQRGIKDVLEQVSALFADHPDLLKEFTYFLPDAVQVQAKERLNRAA 159
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A7R9ZHJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHJ2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.570e-40
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAITYVTTIKKRF+++P+TY+ FLEILHTYQKEQRGIK+VLEQVSSLFADHPDLL+EFT+FLPD VQEQA+ERL RAA
Sbjct:  122 FDHAITYVTTIKKRFANDPRTYQTFLEILHTYQKEQRGIKEVLEQVSSLFADHPDLLKEFTFFLPDAVQEQAKERLQRAA 201
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A7S1XK99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XK99_9STRA)

HSP 1 Score: 137 bits (344), Expect = 9.780e-40
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAI YVTTIKKRFS +P TYK FLEILHTYQKEQR IK+VL+QVS LFA+HPDLL+EFTYFLPD VQEQA+ERL RAA
Sbjct:   26 FDHAINYVTTIKKRFSEDPDTYKTFLEILHTYQKEQRSIKEVLDQVSELFAEHPDLLKEFTYFLPDAVQEQAKERLQRAA 105
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A6H5KLK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.290e-39
Identity = 73/80 (91.25%), Postives = 73/80 (91.25%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRG       VSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA
Sbjct:  286 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGA------VSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 359
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A7S1XJY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJY5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.990e-39
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAI YVTTIKKRFS +P TYK FLEILHTYQ+EQRGIK VL+QVS LF DHPDLL+EFTYFLPD VQ+QA+ERL+RAA
Sbjct:   26 FDHAINYVTTIKKRFSEDPDTYKTFLEILHTYQREQRGIKMVLDQVSELFRDHPDLLKEFTYFLPDAVQDQAKERLHRAA 105
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A7S4E9C3_9STRA (Hypothetical protein n=8 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E9C3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 7.470e-39
Identity = 71/80 (88.75%), Postives = 76/80 (95.00%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAITYVTTIKKRF+HEP+TYKAFLEILHTYQKEQR IKDVLEQVS LFADH DLL+EFTYFLPD VQEQA+ERL+RAA
Sbjct:  140 FDHAITYVTTIKKRFAHEPETYKAFLEILHTYQKEQRSIKDVLEQVSQLFADHSDLLKEFTYFLPDAVQEQAKERLSRAA 219
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BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A7S1USX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USX6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.560e-38
Identity = 64/80 (80.00%), Postives = 74/80 (92.50%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAI+YVT IKKRF+ +P TY  FLEILHTYQKEQRGIK+VLEQV++LFADHPDLL+EFT+FLPD VQEQA+ERL+RAA
Sbjct:  114 FDHAISYVTNIKKRFADDPATYHTFLEILHTYQKEQRGIKEVLEQVAALFADHPDLLKEFTFFLPDAVQEQAKERLHRAA 193
[Close]
BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A7S2CK77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CK77_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.360e-36
Identity = 63/79 (79.75%), Postives = 68/79 (86.08%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRA 239
            FD AI YVT IKKRF H+  TYKAFLEILHTYQ+EQ+GIK+VLEQVS LFADH DLL EFTYFLPD VQEQA ERL+RA
Sbjct:   14 FDRAINYVTKIKKRFDHDQDTYKAFLEILHTYQREQKGIKEVLEQVSGLFADHEDLLTEFTYFLPDAVQEQATERLHRA 92
[Close]
BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Match: A0A397A634_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A634_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.420e-36
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3 
Query:    3 FDHAITYVTTIKKRFSHEPQTYKAFLEILHTYQKEQRGIKDVLEQVSSLFADHPDLLREFTYFLPDPVQEQARERLNRAA 242
            FDHAI YVTTIKKRF+ EP+TYKAFLEILHTYQKEQ  IK VL+QVS LF DHPDLLREFT+FLPD VQEQA+ERLN+AA
Sbjct:  165 FDHAILYVTTIKKRFADEPETYKAFLEILHTYQKEQGSIKQVLDQVSFLFRDHPDLLREFTFFLPDAVQEQAKERLNKAA 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10678.638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZD67_9STRA2.360e-4296.25HDAC_interact domain-containing protein n=1 Tax=Tr... [more]
A0A7S3Y2Z2_HETAK7.860e-4186.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9ZHJ2_9STRA4.570e-4085.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1XK99_9STRA9.780e-4082.50Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6H5KLK8_9PHAE3.290e-3991.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1XJY5_9STRA4.990e-3981.25Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4E9C3_9STRA7.470e-3988.75Hypothetical protein n=8 Tax=Pelagomonas calceolat... [more]
A0A7S1USX6_9STRA4.560e-3880.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2CK77_9STRA1.360e-3679.75Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A397A634_9STRA2.420e-3682.50Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10678contigL-elsbetiae_contig10678:5649..6644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size243
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10678.638.1prot_L-elsbetiae_contig10678.638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10678 5649..6576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.7719085-CDS-L-elsbetiae_contig10678:5648..57621622815286.7719085-CDS-L-elsbetiae_contig10678:5648..5762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10678 5649..5762 +
1691682817.9836452-CDS-L-elsbetiae_contig10678:5648..57621691682817.9836452-CDS-L-elsbetiae_contig10678:5648..5762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10678 5649..5762 +
1622815286.7833736-CDS-L-elsbetiae_contig10678:6516..65761622815286.7833736-CDS-L-elsbetiae_contig10678:6516..6576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10678 6517..6576 +
1691682817.9942687-CDS-L-elsbetiae_contig10678:6516..65761691682817.9942687-CDS-L-elsbetiae_contig10678:6516..6576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10678 6517..6576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.7997253-UTR-L-elsbetiae_contig10678:6576..66441622815286.7997253-UTR-L-elsbetiae_contig10678:6576..6644Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10678 6577..6644 +
1691682818.0038455-UTR-L-elsbetiae_contig10678:6576..66441691682818.0038455-UTR-L-elsbetiae_contig10678:6576..6644Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10678 6577..6644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10678.638.1

>prot_L-elsbetiae_contig10678.638.1 ID=prot_L-elsbetiae_contig10678.638.1|Name=mRNA_L-elsbetiae_contig10678.638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
SSTTRSRTSQPSRSASATSRKPTRPSLRSCTRTRRSSEASRTSWSRCPLS
SPTTPTS*
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mRNA from alignment at L-elsbetiae_contig10678:5649..6644+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10678.638.1 ID=mRNA_L-elsbetiae_contig10678.638.1|Name=mRNA_L-elsbetiae_contig10678.638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig10678:5649..6644+ (Laminarionema elsbetiae ELsaHSoW15)
AGTTCGACCACGCGATCACGTACGTCACAACCATCAAGAAGCGCTTCAGC
CACGAGCCGCAAACCTACAAGGCCTTCCTTGAGATCCTGCACACGTACCA
GAAGGAGCAGCGAGGTGAGAGAAGAGGAGATAAAGGACACAAACGCCACG
ACGACGCAGCTGAGAGATACAAGTTGTTGCTGTTGCCTTCACATTAAAAA
CCGTTCCGATCTCTCTCTATTATCCAGTACACCTCCACGAGTCAGTACTA
ATCCGACAATGTTTTCGTGCTTGCCGCACGCGTTTGTTTCGCCTGCAGAC
AGCGGCTTTTCGCGCGTGTGTTCTTCTTTGTTGGTTTTGGTTCTCGTGCG
CCTTTTTGTGTAGCAAGCGTTTGTTTGTGTACACCCCCAAGGGGCCTCCC
GGATTGTACACCCAGGGCGGGTGCTGCGTGCTTGTTTTCTGCGGTGCCCC
TTTCAGTAATCCTGAGCTAACATATGATATAAAGTATGGAAACCGGGAAA
GGGGGGTCGGTGGTTGGGGTTAGGGTTAGGGTTATTTTCCTATGTATGCA
GATAAACTTAATTTCCGGCGTATGTAAGCGGTTCAGATTTTTGTGTCGCG
CGAGAAGGGTTCGTTCAGCCGCCCCTTTCCCTCGTAGACGGTGAAGCTAT
GTATGCGTTTAGTTGCTGCTGTCTAAATATATGCAGGGGCTCTCTCTCCT
CCGAGCATCGGTGACTGGCGTGGGTGGGTATGTATCAACCACGGTCAGAA
AGCGAAACGAAAAAAAGCGCGCTGACTTTGTTGTTCAATGGTTGGATCGA
TCTCGGCTTCCAACTCTTCTTCTTGTTGTGGTGTTGTCGGGCGTCGTTGT
CGGCGGCGTCTCTTGCAGGCATCAAGGACGTCCTGGAGCAGGTGTCCTCT
CTCTTCGCCGACCACCCCGACCTCCTGAGAGAGTTCACCTACTTCCTCCC
GGACCCCGTCCAGGAGCAGGCCCGGGAGAGGCTCAACCGCGCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10678:5649..6644+

>mRNA_L-elsbetiae_contig10678.638.1 ID=mRNA_L-elsbetiae_contig10678.638.1|Name=mRNA_L-elsbetiae_contig10678.638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig10678:5649..6644+ (Laminarionema elsbetiae ELsaHSoW15)
AGTTCGACCACGCGATCACGTACGTCACAACCATCAAGAAGCGCTTCAGC
CACGAGCCGCAAACCTACAAGGCCTTCCTTGAGATCCTGCACACGTACCA
GAAGGAGCAGCGAGAGTTCGACCACGCGATCACGTACGTCACAACCATCA
AGAAGCGCTTCAGCCACGAGCCGCAAACCTACAAGGCCTTCCTTGAGATC
CTGCACACGTACCAGAAGGAGCAGCGAGGCATCAAGGACGTCCTGGAGCA
GGTGTCCTCTCTCTTCGCCGACCACCCCGACCTCCTGAGCATCAAGGACG
TCCTGGAGCAGGTGTCCTCTCTCTTCGCCGACCACCCCGACCTCCTGA
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