mRNA_L-elsbetiae_contig10676.637.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10676.637.1
Unique NamemRNA_L-elsbetiae_contig10676.637.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10676.637.1 vs. uniprot
Match: A0A6H5L2Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Y8_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.640e-20
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGKPPAL 120
            LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILG+PP L
Sbjct:   97 LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGRPPVL 136
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BLAST of mRNA_L-elsbetiae_contig10676.637.1 vs. uniprot
Match: D7FKC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC7_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.170e-18
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGKPPAL 120
            LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILG+PP L
Sbjct: 1605 LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGRPPVL 1644
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BLAST of mRNA_L-elsbetiae_contig10676.637.1 vs. uniprot
Match: A0A7S1XKF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKF3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.580e-11
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGKP 111
            L R  GT+N+ EPYVYT PRADTVLH GDRVF+LG+P
Sbjct:   53 LYRTAGTKNSVEPYVYTAPRADTVLHEGDRVFVLGEP 89
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BLAST of mRNA_L-elsbetiae_contig10676.637.1 vs. uniprot
Match: H3HCD7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCD7_PHYRM)

HSP 1 Score: 48.9 bits (115), Expect = 1.740e-5
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LLRARGTRN-APEPYVYTGPRADTVLHPGDRVFIL 102
            LLRA+G R  AP PYVYT P +DT+++PGD++F+L
Sbjct: 2532 LLRAKGGRGGAPYPYVYTCPSSDTIVYPGDKIFVL 2566
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BLAST of mRNA_L-elsbetiae_contig10676.637.1 vs. uniprot
Match: A0A3F2RY51_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RY51_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 8.370e-5
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 LLRARGTRN-APEPYVYTGPRADTVLHPGDRVFIL 102
            LLRA+G    AP PYVYT P +DTV++PGD++F+L
Sbjct:  928 LLRAKGEAGGAPFPYVYTCPSSDTVVYPGDKIFVL 962
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10676.637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L2Y8_9PHAE5.640e-2095.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKC7_ECTSI4.170e-1895.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XKF3_9STRA1.580e-1172.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
H3HCD7_PHYRM1.740e-560.00Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3F2RY51_9STRA8.370e-560.00Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10676contigL-elsbetiae_contig10676:1975..2097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue6.3e-15
Seed eggNOG ortholog2880.D7FKC7
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Ec32 ortholog descriptionPotassium channel, calcium-activated, BK, alpha subunit
Ec32 orthologEc-05_005710.1
Exons1
Model size123
Cds size123
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.7417328-CDS-L-elsbetiae_contig10676:1974..20971622815286.7417328-CDS-L-elsbetiae_contig10676:1974..2097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10676 1975..2097 -
1691682817.9704404-CDS-L-elsbetiae_contig10676:1974..20971691682817.9704404-CDS-L-elsbetiae_contig10676:1974..2097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10676 1975..2097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10676.637.1prot_L-elsbetiae_contig10676.637.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10676 1975..2097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10676.637.1

>prot_L-elsbetiae_contig10676.637.1 ID=prot_L-elsbetiae_contig10676.637.1|Name=mRNA_L-elsbetiae_contig10676.637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=41bp
LLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGKPPAL*
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mRNA from alignment at L-elsbetiae_contig10676:1975..2097-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10676.637.1 ID=mRNA_L-elsbetiae_contig10676.637.1|Name=mRNA_L-elsbetiae_contig10676.637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=123bp|location=Sequence derived from alignment at L-elsbetiae_contig10676:1975..2097- (Laminarionema elsbetiae ELsaHSoW15)
CTGTTGCGCGCCCGTGGCACGCGCAACGCGCCCGAGCCGTACGTGTACAC
CGGTCCCAGGGCGGACACGGTGCTGCACCCGGGAGACAGGGTGTTCATCC
TTGGAAAGCCGCCGGCGCTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10676:1975..2097-

>mRNA_L-elsbetiae_contig10676.637.1 ID=mRNA_L-elsbetiae_contig10676.637.1|Name=mRNA_L-elsbetiae_contig10676.637.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig10676:1975..2097- (Laminarionema elsbetiae ELsaHSoW15)
CTGTTGCGCGCCCGTGGCACGCGCAACGCGCCCGAGCCGTACGTGTACAC
CGGTCCCAGGGCGGACACGGTGCTGCACCCGGGAGACAGGGTGTTCATCC
TTGGAAAGCCGCCGGCGCTCTAGCTGTTGCGCGCCCGTGGCACGCGCAAC
GCGCCCGAGCCGTACGTGTACACCGGTCCCAGGGCGGACACGGTGCTGCA
CCCGGGAGACAGGGTGTTCATCCTTGGAAAGCCGCCGGCGCTCTAG
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