mRNA_L-elsbetiae_contig10543.535.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10543.535.1
Unique NamemRNA_L-elsbetiae_contig10543.535.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10543.535.1 vs. uniprot
Match: A0A6H5K715_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K715_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.180e-9
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:  682 ATKTADALE---ERVEAEVGAVGGALGALAERVREWEPSRQLEAVRQLVDGQVEAS-AKESTARAAAALAARLSAFEREVRGTLSGFS 933
            A KTADA+E   ER + +  ++  A+ AL  R+ EWEPSRQLEAV+QLVD QV A+ AK+STA AAAA   RLSA ER VRG LS  S
Sbjct:  239 AAKTADAVERDRERSQRKAESITNAVRALKGRLEEWEPSRQLEAVQQLVDNQVSAAIAKKSTADAAAA---RLSALERAVRGILSELS 323
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BLAST of mRNA_L-elsbetiae_contig10543.535.1 vs. uniprot
Match: D8LGB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB7_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.310e-9
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:  682 ATKTADALE---ERVEAEVGAVGGALGALAERVREWEPSRQLEAVRQLVDGQVEAS-AKESTARAAAALAARLSAFEREVRGTLSGFS 933
            A KTADA+E   ER + +  ++  A+ AL  R+ EWEPS QLEAV++LVD QV A+ AKESTA AAAA   RLSA EREVRG LS  S
Sbjct:  336 AAKTADAVERDRERSQGKAESITDAVRALEGRLEEWEPSCQLEAVQRLVDNQVSAAVAKESTADAAAA---RLSALEREVRGILSELS 420
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10543.535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K715_9PHAE3.180e-959.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB7_ECTSI6.310e-959.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10543contigL-elsbetiae_contig10543:3952..6730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1383
Cds size1383
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10543.535.1prot_L-elsbetiae_contig10543.535.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10543 3952..6730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815278.2312613-CDS-L-elsbetiae_contig10543:3951..45061622815278.2312613-CDS-L-elsbetiae_contig10543:3951..4506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 3952..4506 -
1691682812.794302-CDS-L-elsbetiae_contig10543:3951..45061691682812.794302-CDS-L-elsbetiae_contig10543:3951..4506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 3952..4506 -
1622815278.2425637-CDS-L-elsbetiae_contig10543:4942..50571622815278.2425637-CDS-L-elsbetiae_contig10543:4942..5057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 4943..5057 -
1691682812.8080394-CDS-L-elsbetiae_contig10543:4942..50571691682812.8080394-CDS-L-elsbetiae_contig10543:4942..5057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 4943..5057 -
1622815278.253196-CDS-L-elsbetiae_contig10543:5268..57381622815278.253196-CDS-L-elsbetiae_contig10543:5268..5738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 5269..5738 -
1691682812.8180997-CDS-L-elsbetiae_contig10543:5268..57381691682812.8180997-CDS-L-elsbetiae_contig10543:5268..5738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 5269..5738 -
1622815278.2616198-CDS-L-elsbetiae_contig10543:5970..60731622815278.2616198-CDS-L-elsbetiae_contig10543:5970..6073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 5971..6073 -
1691682812.827486-CDS-L-elsbetiae_contig10543:5970..60731691682812.827486-CDS-L-elsbetiae_contig10543:5970..6073Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 5971..6073 -
1622815278.2719429-CDS-L-elsbetiae_contig10543:6590..67301622815278.2719429-CDS-L-elsbetiae_contig10543:6590..6730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 6591..6730 -
1691682812.8362496-CDS-L-elsbetiae_contig10543:6590..67301691682812.8362496-CDS-L-elsbetiae_contig10543:6590..6730Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10543 6591..6730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10543.535.1

>prot_L-elsbetiae_contig10543.535.1 ID=prot_L-elsbetiae_contig10543.535.1|Name=mRNA_L-elsbetiae_contig10543.535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=461bp
SVETREAVGLREQALQALESRLAEMETRVRGCEAHAVRADPTAVALRIET
VSSRLEELSRRVDHKASAKATERALDQKVDKSLLRTALASKADRAHLSTI
EASASSLLDSSRERATAAAALERKVAAAVAVAEAATGSSAATAATLGGRA
DGHDRALTQLSMEVEMAAAAAAATAAAAAEAAERARADGGGRRCGCEREL
RRAGRRLERVEGGLSAVAAASAGAAERATKTADALEERVEAEVGAVGGAL
GALAERVREWEPSRQLEAVRQLVDGQVEASAKESTARAAAALAARLSAFE
REVRGTLSGFSRGLLAGRDDASAAAIACTPPARWRRRRRRPQEEPRVRRD
RDRGAAANGGAAPPASGENRGVDAQTSTTPPPPPPLEVGGPERREGGPEA
GMSQRAAAEWRARQGPRKAGKAGKGRECRREGERREGERRGARRGGEGGG
GGAAGCAVALP
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mRNA from alignment at L-elsbetiae_contig10543:3952..6730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10543.535.1 ID=mRNA_L-elsbetiae_contig10543.535.1|Name=mRNA_L-elsbetiae_contig10543.535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2779bp|location=Sequence derived from alignment at L-elsbetiae_contig10543:3952..6730- (Laminarionema elsbetiae ELsaHSoW15)
TCTGTTGAGACGAGGGAGGCTGTGGGACTGCGCGAGCAGGCGCTACAAGC
GCTGGAGAGTCGGCTGGCCGAGATGGAGACGAGGGTGCGAGGGTGCGAGG
CCCATGCCGTTCGGGCCGACCCGACAGCCGTCGCTCTTAGGTGGGATGCG
TTATTTTGTGTGTGCTCTTGTGTTGATGAAGGGAGGGGGGAGATGCCGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGTTACTATTGC
TGTGGTTGTTGTGGTGGTTACTGTTGTTGTCGTTGCTAATGTTGTTGTGG
TGGCTGCTGCTGCTGGTGGTTTTGCTGCTGCTGGTGGTTGCTGCTGCTGC
TGCTGTTGTTGTTGCTGGTAATGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGATGTTTTTGTTTGCTGGCGTTGTTGCCTGTTGCTGCGCTACTTT
TGTGTCTCGCGCTCGGATGCCACCACCACGCGGTTGGGCTGTACATCCAG
GCGAAGACAAATACCCAGGTGTTCGTGTTGCAATCTACCCCCCCCCCAAC
ACCTCAGACGTCTTCATGATTTATCTTCTCTCTCCCTCTACCTCTCCCTC
TCCCTCTCTCCATCTCTCTCGCTCCTTTGCTCAATGCACCTTCGACGCTC
GTCGCAGGATCGAGACGGTGTCCTCCAGGCTCGAAGAGCTGAGCAGGCGC
GTTGATCACAAGGCCAGCGCCAAGGCCACGGAACGCGCGCTGGACCAGAA
GGTCGACAAGGTGGGTGACGCAAGAGAACACGCAGCGCAGCGCAGGGCAG
CGCAGGGCAGCTCAGCTTAGCATGGTGTGGTTGGTGTCCACCGAAAAAAA
ACGATGGCAGCCAACGACAACGTCCACCGCGTCACCAACTCCGTCAAAAC
GCACACACCACCTCGTCCATCTCCCGCCCCCCCGTCTTCCCCTACCCACT
GTGAACGCCCCCCCCCCGCCGCTGCCGCCGCCGCCAAAACAGTCGTTGCT
TCGGACAGCGCTGGCCTCCAAGGCCGACCGCGCCCACCTGTCGACGATCG
AAGCCTCGGCATCCTCGCTGCTCGACTCCTCACGAGAGCGCGCCACCGCC
GCCGCCGCGCTCGAGCGAAAGGTCGCCGCGGCGGTGGCCGTCGCCGAGGC
CGCGACGGGATCCTCCGCCGCCACCGCCGCCACTCTAGGGGGGCGCGCCG
ACGGCCACGACAGGGCGCTGACCCAGCTGTCGATGGAGGTGGAGATGGCG
GCGGCGGCGGCGGCGGCTACCGCGGCGGCGGCTGCCGAGGCGGCCGAGAG
GGCGAGGGCGGACGGCGGGGGCCGCCGGTGCGGCTGCGAGAGGGAGCTCA
GGCGCGCGGGGAGGAGGCTGGAGAGAGTCGAGGGGGGGCTGTCTGCTGTG
GCGGCGGCTTCGGCGGGGGCCGCCGAGAGGGCCACCAAGACAGCGGACGC
GCTCGAGGAGCGGTGCGGGAAGAGGTGAGGAGAGCGAAGCGACGGGACGG
GACGGGTGGGGCGCGCGCGCGTGGGGTGGGGTGGGGAGATGATTTTGCAC
TTTCTTGAGCCCCCGGGTGTGTAGAGAATATGTAGAGACCGTGCCGCTTG
CTCGCTCACGTTGGTTGGTTGGGTGCTCCCTGACGTCGCGCGCTTGGGGT
CTTGGTGGACGGGATGGATGCAGGGTCGAGGCTGAGGTCGGGGCTGTCGG
CGGCGCGCTTGGGGCGCTCGCCGAACGGGTGCGGGAGTGGGAGCCGTCGC
GCCAACTCGAGGCGGTGCGGCAACTTGTGGACGGCCAGGTGAGAATTCGT
CACCCAGTCAGTCCTGCCGTGTGATAAGAAAAGACCCGCTCACCAAAACT
GCCCATCCCATCCCGTTCCCGTCCTCGTCCTCGTCTCCGCACTCCACGCA
CGTCTAGACGTAGCCCCTCTCCCTGTGTCCACGTTTCCGCTGTTTCGTCT
ATCTAGATCGTCGTGGTGTTCGATTTTTCCGGCTCTCCCCCGTGTTTGCG
TTCACGGCCGCGCAAAGTACACGCGCCTACTTGCCTCACCTGACGGAGCC
CCCCTCCCCCCGCTTATTTCGGCTCGGTGACGACGCCAGCGGCTTCCTCT
GCAGCGACACGCACCACACCACTTTCCCTTCAACACCAAACCACGACACA
CTTCCTCCCTCTCGACTATGGTACTGTTTTGGTATTTTTTTATTTAAAAC
ACTCTTTTGCCTCCCTCTCGTCAGGTGGAGGCGTCGGCGAAGGAGAGCAC
TGCTCGCGCCGCCGCAGCCCTCGCCGCGCGGCTGTCGGCGTTCGAGCGCG
AGGTGCGGGGCACCCTCTCCGGATTCTCGCGCGGCCTCCTGGCCGGCCGG
GATGATGCAAGCGCGGCGGCGATCGCGTGCACGCCCCCGGCACGCTGGCG
GCGGCGGCGGCGGCGGCCGCAGGAAGAACCGCGAGTCCGGCGCGACCGCG
ACCGCGGGGCCGCCGCCAACGGGGGTGCCGCGCCGCCAGCCTCCGGCGAG
AACAGGGGGGTGGACGCACAAACTTCCACCACGCCCCCCCCCCCCCCCCC
CCTCGAGGTCGGAGGTCCTGAGCGTCGCGAAGGGGGGCCAGAAGCAGGGA
TGTCGCAGCGCGCCGCCGCGGAGTGGCGGGCTCGTCAGGGGCCGAGAAAG
GCGGGAAAGGCGGGAAAGGGCCGGGAATGCCGGAGAGAAGGGGAGAGGAG
GGAAGGAGAGAGGAGGGGGGCTCGGAGGGGAGGGGAGGGGGGCGGGGGCG
GTGCCGCCGGTTGCGCTGTTGCCTTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10543:3952..6730-

>mRNA_L-elsbetiae_contig10543.535.1 ID=mRNA_L-elsbetiae_contig10543.535.1|Name=mRNA_L-elsbetiae_contig10543.535.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2766bp|location=Sequence derived from alignment at L-elsbetiae_contig10543:3952..6730- (Laminarionema elsbetiae ELsaHSoW15)
TCTGTTGAGACGAGGGAGGCTGTGGGACTGCGCGAGCAGGCGCTACAAGC
GCTGGAGAGTCGGCTGGCCGAGATGGAGACGAGGGTGCGAGGGTGCGAGG
CCCATGCCGTTCGGGCCGACCCGACAGCCGTCGCTCTTAGTCTGTTGAGA
CGAGGGAGGCTGTGGGACTGCGCGAGCAGGCGCTACAAGCGCTGGAGAGT
CGGCTGGCCGAGATGGAGACGAGGGTGCGAGGGTGCGAGGCCCATGCCGT
TCGGGCCGACCCGACAGCCGTCGCTCTTAGGATCGAGACGGTGTCCTCCA
GGCTCGAAGAGCTGAGCAGGCGCGTTGATCACAAGGCCAGCGCCAAGGCC
ACGGAACGCGCGCTGGACCAGAAGGTCGACAAGGATCGAGACGGTGTCCT
CCAGGCTCGAAGAGCTGAGCAGGCGCGTTGATCACAAGGCCAGCGCCAAG
GCCACGGAACGCGCGCTGGACCAGAAGGTCGACAAGTCGTTGCTTCGGAC
AGCGCTGGCCTCCAAGGCCGACCGCGCCCACCTGTCGACGATCGAAGCCT
CGGCATCCTCGCTGCTCGACTCCTCACGAGAGCGCGCCACCGCCGCCGCC
GCGCTCGAGCGAAAGGTCGCCGCGGCGGTGGCCGTCGCCGAGGCCGCGAC
GGGATCCTCCGCCGCCACCGCCGCCACTCTAGGGGGGCGCGCCGACGGCC
ACGACAGGGCGCTGACCCAGCTGTCGATGGAGGTGGAGATGGCGGCGGCG
GCGGCGGCGGCTACCGCGGCGGCGGCTGCCGAGGCGGCCGAGAGGGCGAG
GGCGGACGGCGGGGGCCGCCGGTGCGGCTGCGAGAGGGAGCTCAGGCGCG
CGGGGAGGAGGCTGGAGAGAGTCGAGGGGGGGCTGTCTGCTGTGGCGGCG
GCTTCGGCGGGGGCCGCCGAGAGGGCCACCAAGACAGCGGACGCGCTCGA
GGAGCGTCGTTGCTTCGGACAGCGCTGGCCTCCAAGGCCGACCGCGCCCA
CCTGTCGACGATCGAAGCCTCGGCATCCTCGCTGCTCGACTCCTCACGAG
AGCGCGCCACCGCCGCCGCCGCGCTCGAGCGAAAGGTCGCCGCGGCGGTG
GCCGTCGCCGAGGCCGCGACGGGATCCTCCGCCGCCACCGCCGCCACTCT
AGGGGGGCGCGCCGACGGCCACGACAGGGCGCTGACCCAGCTGTCGATGG
AGGTGGAGATGGCGGCGGCGGCGGCGGCGGCTACCGCGGCGGCGGCTGCC
GAGGCGGCCGAGAGGGCGAGGGCGGACGGCGGGGGCCGCCGGTGCGGCTG
CGAGAGGGAGCTCAGGCGCGCGGGGAGGAGGCTGGAGAGAGTCGAGGGGG
GGCTGTCTGCTGTGGCGGCGGCTTCGGCGGGGGCCGCCGAGAGGGCCACC
AAGACAGCGGACGCGCTCGAGGAGCGGGTCGAGGCTGAGGTCGGGGCTGT
CGGCGGCGCGCTTGGGGCGCTCGCCGAACGGGTGCGGGAGTGGGAGCCGT
CGCGCCAACTCGAGGCGGTGCGGCAACTTGTGGACGGCCAGGGTCGAGGC
TGAGGTCGGGGCTGTCGGCGGCGCGCTTGGGGCGCTCGCCGAACGGGTGC
GGGAGTGGGAGCCGTCGCGCCAACTCGAGGCGGTGCGGCAACTTGTGGAC
GGCCAGGTGGAGGCGTCGGCGAAGGAGAGCACTGCTCGCGCCGCCGCAGC
CCTCGCCGCGCGGCTGTCGGCGTTCGAGCGCGAGGTGCGGGGCACCCTCT
CCGGATTCTCGCGCGGCCTCCTGGCCGGCCGGGATGATGCAAGCGCGGCG
GCGATCGCGTGCACGCCCCCGGCACGCTGGCGGCGGCGGCGGCGGCGGCC
GCAGGAAGAACCGCGAGTCCGGCGCGACCGCGACCGCGGGGCCGCCGCCA
ACGGGGGTGCCGCGCCGCCAGCCTCCGGCGAGAACAGGGGGGTGGACGCA
CAAACTTCCACCACGCCCCCCCCCCCCCCCCCCCTCGAGGTCGGAGGTCC
TGAGCGTCGCGAAGGGGGGCCAGAAGCAGGGATGTCGCAGCGCGCCGCCG
CGGAGTGGCGGGCTCGTCAGGGGCCGAGAAAGGCGGGAAAGGCGGGAAAG
GGCCGGGAATGCCGGAGAGAAGGGGAGAGGAGGGAAGGAGAGAGGAGGGG
GGCTCGGAGGGGAGGGGAGGGGGGCGGGGGCGGTGCCGCCGGTTGCGCTG
TTGCCTTGCCGGTGGAGGCGTCGGCGAAGGAGAGCACTGCTCGCGCCGCC
GCAGCCCTCGCCGCGCGGCTGTCGGCGTTCGAGCGCGAGGTGCGGGGCAC
CCTCTCCGGATTCTCGCGCGGCCTCCTGGCCGGCCGGGATGATGCAAGCG
CGGCGGCGATCGCGTGCACGCCCCCGGCACGCTGGCGGCGGCGGCGGCGG
CGGCCGCAGGAAGAACCGCGAGTCCGGCGCGACCGCGACCGCGGGGCCGC
CGCCAACGGGGGTGCCGCGCCGCCAGCCTCCGGCGAGAACAGGGGGGTGG
ACGCACAAACTTCCACCACGCCCCCCCCCCCCCCCCCCCTCGAGGTCGGA
GGTCCTGAGCGTCGCGAAGGGGGGCCAGAAGCAGGGATGTCGCAGCGCGC
CGCCGCGGAGTGGCGGGCTCGTCAGGGGCCGAGAAAGGCGGGAAAGGCGG
GAAAGGGCCGGGAATGCCGGAGAGAAGGGGAGAGGAGGGAAGGAGAGAGG
AGGGGGGCTCGGAGGGGAGGGGAGGGGGGCGGGGGCGGTGCCGCCGGTTG
CGCTGTTGCCTTGCCG
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