mRNA_L-elsbetiae_contig10542.533.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10542.533.1
Unique NamemRNA_L-elsbetiae_contig10542.533.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10542.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10542contigL-elsbetiae_contig10542:93..3832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815278.14671-CDS-L-elsbetiae_contig10542:92..1751622815278.14671-CDS-L-elsbetiae_contig10542:92..175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10542 93..175 +
1691682812.7543993-CDS-L-elsbetiae_contig10542:92..1751691682812.7543993-CDS-L-elsbetiae_contig10542:92..175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10542 93..175 +
1622815278.1575959-CDS-L-elsbetiae_contig10542:3750..38321622815278.1575959-CDS-L-elsbetiae_contig10542:3750..3832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10542 3751..3832 +
1691682812.7632365-CDS-L-elsbetiae_contig10542:3750..38321691682812.7632365-CDS-L-elsbetiae_contig10542:3750..3832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10542 3751..3832 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10542.533.1prot_L-elsbetiae_contig10542.533.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10542 93..3832 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10542.533.1

>prot_L-elsbetiae_contig10542.533.1 ID=prot_L-elsbetiae_contig10542.533.1|Name=mRNA_L-elsbetiae_contig10542.533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
GSDGGSLARSVSFCFSCGLECAWKQAYRVSHGEGFPPEEMENIPAFDPPT
AAKLE
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mRNA from alignment at L-elsbetiae_contig10542:93..3832+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10542.533.1 ID=mRNA_L-elsbetiae_contig10542.533.1|Name=mRNA_L-elsbetiae_contig10542.533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3740bp|location=Sequence derived from alignment at L-elsbetiae_contig10542:93..3832+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGTGATGGAGGGAGCTTGGCGCGGTCTGTGAGTTTTTGCTTTAGCTG
TGGATTGGAGTGTGCCTGGAAACAAGCTTATAGGTGAAGTTCTTTGGTGG
CACATGTTCGTCAACATTTGACCTGCGGCACCGCGATTGGCGGCAGCACA
GAAATCTCCTGCAGTCGGTGTGCTCGATGGGTGTGAGGGTTTGAGTGTGC
TCTCGATACAGCAGAACTGTGGCAGCTAAGACCACAATTAAACGCAGCAG
TATTCTTCGCGTCTTGTGCCATCCCACCGACAGGGTGCGGAGTTTTCAGC
ATAGCGAGGTTCGGCGAAGCCACTGATGCCAATCCCCTGTTGGCAGAACA
TAAAATGACTTGAACAGTGGAAACTCGCCCTGTCAGTGGTTGCTCGGCAC
GTGCAAAAGGAGCCCTTGCCGTGGCAATACCAAAAGTGGGTAAGGCCGTA
CGCGACTCACACAGTAGTTGTAATCCAGACCGACCTCCCCCTTGGAGCGA
AGTGGCACAAGCTGAAAAGCGCAAGAGTTGCATAGGTGGTAAAATGTGAA
GGATAGCACCAACTCTGACCACCGCATCCTTTCGTCGCAACCTACAGAAG
ACACCCCTCCAAGGTTGAGACAAAACAATCTAAGAAGCATCGAGCACAGA
AAACGTTCAAAGCTGCTCGGTGGCTTCAGGAACGAATTCGAGTGGCTCCA
ACAGTAGTGGCAGGAGACCGTGTGTGAAGCGATCGTCCGTTGCGGTGGAC
GATCCCTTCTCTACCTCCCTCTCGCGTGAATGCAAAACATACAACACGAA
CCCACGAAATTCTGCTCCGAGAGTAGTAGCAGCAGACCGTGTGTGAAGCG
ATCGTGCGTCGCGGTGGACAATCCCTTCTCTACCTCCCTTTCACGTAAAT
CAAAATCATAGAAGTATACTCGGTGGCTTCCGGAACGAACCCAAGAACTG
TAGCTCCGAAAGTAGTAGTATGAGACCGTGTGTGAAGCGATCGACCGTCG
CGGTGGACGATCCCTTATCTACCTCCCTCTCGCGTGAATGAAAACATACA
ACAATACCAACCCACGATTTTCAGCTCCGAGAGTAGGAGCAGCAGACCGT
GTGTGAAGCGATCATCCGTCGCGGTGGACAATCCCTTCTCTACCTCCCTC
TCGCGTGAATCAAATACATCGAAGTTTACCTGGGGGCTTTCGGACACACC
CAAAAAATGTAGCTCCGAGAGTAGGGGTAGCAGACCGTGTGTGAAGCGAT
CGTCCGTCGCGATGGACAATCCCTTCTCTACCTCCCTCTCGCGTGAATAC
AAAACATTGAAGTATACTCGATGGCTTCAGGAACGAAGCCAACCATTGCA
GCTCCAAGAGTAGTGGTAGTAAGCCGTGTGTGAAGCGATCGTCCGTCGCG
GTGGACAATCCCTTCTCTACCTTCCTCTCGCGTGAATACAAAACATACAA
CAACACGAACCCACGACATTCTGCTCGGAGAGCAGTATTATGAGACGGTG
AGTGAACTGATCGTGCGTTGCGGTAGACAATCCCTTCTCTACCTCCCTTT
CACGTAAATCAAAATCATAGAAGTTACTCGGTGGCTTCCGGAACGAACCC
AAGAACTGTAGCTCGGAGAGTAGTATTATGAGACCGTGTGTGAAGCGATC
GCTCGTCGCGGTGGACGATCCCTTCTCTACCTCCCTCTCGCGTGAATGCA
AAACATACAACAATACGAACCCACGATTTTCAGCTCCGAGAGTAGTAGTA
GGAGACCGTGTGTGAAGCGATCATCCGTCGCGGTGGACAATCCCTTCTCT
ACCTCCTTCTCGCGTGAATCAAAGACATAGAAGTATACTCGGTGGCTTCC
GGAACGAACCCAAAAAATGTAGCTCCGAGAGTAGGGGTAGCAGACCGTGT
GTGAAGCGATCATCCGTCGCGGTGGACAATCCCTTCTCTACCTCCTTCTC
GCGTGAATACAATACATACAAGTATACTCGGTGGCTTCCGGAACGAACCC
AACTATTGCAGCTTTGAGAGTAGTAGGAGGAGGCCGTGTGTAAAGCGATC
GTCCGTCGCGATGGACAATCCTATCTTTACCTCCCTTTCGCGTGAATACA
AAACATACAACAATACAAACCCACGAAGTAGGAGGAGGCCGTGTGTGAAG
CGATCGTCCGTCGCGATGGACAATCCTTTCTTTACCTCCTTCTCGCGTGA
ATACAAAACATACAACCATACAAACCCACGAAATTCAGCTCCGAGAGTAG
GGTGTGTGAAGCTATCGTCCGTCGCGGTGGACAATCCCTTCTCTTCGTTT
CTGTCTTTTTCTCGCGTGGATCAAATACATAGAAGTACTCGGGTGGCTTG
AGGACACACCCAAGAAATGTAGCTCCGAGAGTAGGGGTAGACGACCGTGT
GTTAAGCGATCGTCCGTCGCGGTGGACAATCCCTTCTCTACCTACCTCTC
GCGTGATACAAAGCATGCAAGAATACGAACCCACGTAATTCAGCTCCGAG
AGTAGCAGTAGGAGACCGTGTGTGAAGCGATCGTCCGTCGCGGTGGAATT
TCCCTTTTCTACCTCTCCTTCGCGTGAATCAAATACACCGAAGTATTCTC
GGTGGCTTCAGGAACGAATCCAAGTGTTGCAGCTCAGAGAGTAGTGGTAG
GAGGCCGTGTGTGAAGCGATCGTGCGTCGCGGTGGACAATCCCTTCTCTA
CCTCCCTCTCGCATGAAGCAAAACATTGAAGTATACTCGGTGGCTTCAGG
ACGCACCCAAGAAATGTAGAATCTAGAGTAGTAGTGGGAGACCGTGTGTG
AAGCGATCGTCCGTCGCGGTGGACAATCCCTTCTGTACCTTTCTTTCGCG
TATATACATGATCGTTGATTACGACGATTAGTTGATTGATGGCTACATAG
GATGCATACCAGACGAAATCGTCCGTCACGGTGGACAACCCCGTCTTTAC
CCTCCCTCTCGCGTGTGAAGAAAAAATGTAGAACCCGTGAGACATCTATC
TGTAAACAGACGATGCAAAATAGAGCTCGGAGAGTTTGAAGAATCCGTCT
GAGACGCAATCGTCCGTCACGGTGGACAATCGCGGTGCCGATGGTGATTC
CCGTCCTGATGGAATTCTATCGGCCTGTGACGGAATCGTCCGTGACGATG
GACAAGCGCGTCTCTACCCTCACCCTCGCGAGTAAAACGATATTCCAAGA
GGGACTTCTATCGCTTATGTACACCCCCAATCGTCTCGTAAACAGGTAGA
TCCTTTATCTTAGAACCTTCAACAAACTTTACTCCAAATATGTGTTTGGG
CAAGGGCGCCCCGCTCGCCCACAACCCTCACCCTTCCATTCCCACATATC
TTGGGAAAGTTCGTCTCCGAGGAATCTCTCCAGGGATTCATCACTTGTTC
GCAGGGGATAGAGGACTTGAGGTGATCCAACCATTCAGAATTTCCCTGTG
GAGGACGTGATTGCTGAGTGCAGAACCTCCCGAAAATATTGGACCATCAA
CAAGTTTAGAATCTCCAGGACCTTCCCAGTTTTCGCACTTCGAATATTTT
CATCGACAGACGCAATCGTCTGTTGCAATCGACAATTTGTGCACACGTGA
CCACTGGAGCTTGCCGAAGCATCTAATCTACCTACCTCTGCCCAAACCAA
TTTCTCAGGGTATCTCATGGGGAAGGATTTCCCCCTGAGGAGATGGAAAA
TATTCCCGCCTTTGATCCACCTACGGCGGCCAAACTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10542:93..3832+

>mRNA_L-elsbetiae_contig10542.533.1 ID=mRNA_L-elsbetiae_contig10542.533.1|Name=mRNA_L-elsbetiae_contig10542.533.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig10542:93..3832+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGTGATGGAGGGAGCTTGGCGCGGTCTGTGAGTTTTTGCTTTAGCTG
TGGATTGGAGTGTGCCTGGAAACAAGCTTATAGGGGAGTGATGGAGGGAG
CTTGGCGCGGTCTGTGAGTTTTTGCTTTAGCTGTGGATTGGAGTGTGCCT
GGAAACAAGCTTATAGGGTATCTCATGGGGAAGGATTTCCCCCTGAGGAG
ATGGAAAATATTCCCGCCTTTGATCCACCTACGGCGGCCAAACTCGAGGG
TATCTCATGGGGAAGGATTTCCCCCTGAGGAGATGGAAAATATTCCCGCC
TTTGATCCACCTACGGCGGCCAAACTCGAG
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